data_1QAX # _model_server_result.job_id Of7Q1odonsO2xliDEzw_Qg _model_server_result.datetime_utc '2024-10-16 10:31:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1QAX # _exptl.entry_id 1QAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QAX _cell.length_a 228.7 _cell.length_b 228.7 _cell.length_c 228.7 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 296 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 296 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 296 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 796 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 336 n n PA O2A NAD sing 337 n n PA O5B NAD sing 338 n n PA O3 NAD sing 339 n n O2A HOA2 NAD sing 340 n n O5B C5B NAD sing 341 n n C5B C4B NAD sing 342 n n C5B H51A NAD sing 343 n n C5B H52A NAD sing 344 n n C4B O4B NAD sing 345 n n C4B C3B NAD sing 346 n n C4B H4B NAD sing 347 n n O4B C1B NAD sing 348 n n C3B O3B NAD sing 349 n n C3B C2B NAD sing 350 n n C3B H3B NAD sing 351 n n O3B HO3A NAD sing 352 n n C2B O2B NAD sing 353 n n C2B C1B NAD sing 354 n n C2B H2B NAD sing 355 n n O2B HO2A NAD sing 356 n n C1B N9A NAD sing 357 n n C1B H1B NAD sing 358 n n N9A C8A NAD sing 359 n y N9A C4A NAD sing 360 n y C8A N7A NAD doub 361 n y C8A H8A NAD sing 362 n n N7A C5A NAD sing 363 n y C5A C6A NAD sing 364 n y C5A C4A NAD doub 365 n y C6A N6A NAD sing 366 n n C6A N1A NAD doub 367 n y N6A H61A NAD sing 368 n n N6A H62A NAD sing 369 n n N1A C2A NAD sing 370 n y C2A N3A NAD doub 371 n y C2A H2A NAD sing 372 n n N3A C4A NAD sing 373 n y O3 PN NAD sing 374 n n PN O1N NAD doub 375 n n PN O2N NAD sing 376 n n PN O5D NAD sing 377 n n O5D C5D NAD sing 378 n n C5D C4D NAD sing 379 n n C5D H51N NAD sing 380 n n C5D H52N NAD sing 381 n n C4D O4D NAD sing 382 n n C4D C3D NAD sing 383 n n C4D H4D NAD sing 384 n n O4D C1D NAD sing 385 n n C3D O3D NAD sing 386 n n C3D C2D NAD sing 387 n n C3D H3D NAD sing 388 n n O3D HO3N NAD sing 389 n n C2D O2D NAD sing 390 n n C2D C1D NAD sing 391 n n C2D H2D NAD sing 392 n n O2D HO2N NAD sing 393 n n C1D N1N NAD sing 394 n n C1D H1D NAD sing 395 n n N1N C2N NAD sing 396 n y N1N C6N NAD doub 397 n y C2N C3N NAD doub 398 n y C2N H2N NAD sing 399 n n C3N C7N NAD sing 400 n n C3N C4N NAD sing 401 n y C7N O7N NAD doub 402 n n C7N N7N NAD sing 403 n n N7N H71N NAD sing 404 n n N7N H72N NAD sing 405 n n C4N C5N NAD doub 406 n y C4N H4N NAD sing 407 n n C5N C6N NAD sing 408 n y C5N H5N NAD sing 409 n n C6N H6N NAD sing 410 n n # _atom_sites.entry_id 1QAX _atom_sites.fract_transf_matrix[1][1] 0.004373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HMG A 1 1002 1002 HMG HCO . D 3 NAD B 1 1001 1001 NAD NAD . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2003 2003 HOH HOH . E 4 HOH A 3 2004 2004 HOH HOH . E 4 HOH A 4 2005 2005 HOH HOH . E 4 HOH A 5 2013 2013 HOH HOH . E 4 HOH A 6 2014 2014 HOH HOH . E 4 HOH A 7 2016 2016 HOH HOH . E 4 HOH A 8 2018 2018 HOH HOH . E 4 HOH A 9 2021 2021 HOH HOH . E 4 HOH A 10 2023 2023 HOH HOH . E 4 HOH A 11 2024 2024 HOH HOH . E 4 HOH A 12 2025 2025 HOH HOH . E 4 HOH A 13 2026 2026 HOH HOH . E 4 HOH A 14 2027 2027 HOH HOH . E 4 HOH A 15 2028 2028 HOH HOH . E 4 HOH A 16 2030 2030 HOH HOH . E 4 HOH A 17 2032 2032 HOH HOH . E 4 HOH A 18 2034 2034 HOH HOH . E 4 HOH A 19 2036 2036 HOH HOH . E 4 HOH A 20 2040 2040 HOH HOH . E 4 HOH A 21 2041 2041 HOH HOH . E 4 HOH A 22 2042 2042 HOH HOH . E 4 HOH A 23 2046 2046 HOH HOH . E 4 HOH A 24 2047 2047 HOH HOH . E 4 HOH A 25 2048 2048 HOH HOH . E 4 HOH A 26 2049 2049 HOH HOH . E 4 HOH A 27 2050 2050 HOH HOH . E 4 HOH A 28 2053 2053 HOH HOH . E 4 HOH A 29 2055 2055 HOH HOH . E 4 HOH A 30 2057 2057 HOH HOH . E 4 HOH A 31 2058 2058 HOH HOH . E 4 HOH A 32 2060 2060 HOH HOH . E 4 HOH A 33 2063 2063 HOH HOH . E 4 HOH A 34 2065 2065 HOH HOH . E 4 HOH A 35 2066 2066 HOH HOH . E 4 HOH A 36 2069 2069 HOH HOH . E 4 HOH A 37 2070 2070 HOH HOH . E 4 HOH A 38 2071 2071 HOH HOH . E 4 HOH A 39 2072 2072 HOH HOH . F 4 HOH B 1 2002 2002 HOH HOH . F 4 HOH B 2 2006 2006 HOH HOH . F 4 HOH B 3 2007 2007 HOH HOH . F 4 HOH B 4 2008 2008 HOH HOH . F 4 HOH B 5 2009 2009 HOH HOH . F 4 HOH B 6 2010 2010 HOH HOH . F 4 HOH B 7 2011 2011 HOH HOH . F 4 HOH B 8 2012 2012 HOH HOH . F 4 HOH B 9 2017 2017 HOH HOH . F 4 HOH B 10 2019 2019 HOH HOH . F 4 HOH B 11 2020 2020 HOH HOH . F 4 HOH B 12 2022 2022 HOH HOH . F 4 HOH B 13 2029 2029 HOH HOH . F 4 HOH B 14 2031 2031 HOH HOH . F 4 HOH B 15 2033 2033 HOH HOH . F 4 HOH B 16 2035 2035 HOH HOH . F 4 HOH B 17 2037 2037 HOH HOH . F 4 HOH B 18 2038 2038 HOH HOH . F 4 HOH B 19 2039 2039 HOH HOH . F 4 HOH B 20 2043 2043 HOH HOH . F 4 HOH B 21 2044 2044 HOH HOH . F 4 HOH B 22 2045 2045 HOH HOH . F 4 HOH B 23 2051 2051 HOH HOH . F 4 HOH B 24 2052 2052 HOH HOH . F 4 HOH B 25 2054 2054 HOH HOH . F 4 HOH B 26 2056 2056 HOH HOH . F 4 HOH B 27 2061 2061 HOH HOH . F 4 HOH B 28 2062 2062 HOH HOH . F 4 HOH B 29 2064 2064 HOH HOH . F 4 HOH B 30 2067 2067 HOH HOH . F 4 HOH B 31 2068 2068 HOH HOH . F 4 HOH B 32 2073 2073 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 82.769 139.929 104.5 1 48.33 ? PA NAD 1001 B 1 HETATM 2 O O1A NAD . . . D 3 82.19 140.281 105.824 1 48.8 ? O1A NAD 1001 B 1 HETATM 3 O O2A NAD . . . D 3 81.792 139.48 103.463 1 47.16 ? O2A NAD 1001 B 1 HETATM 4 O O5B NAD . . . D 3 83.59 141.197 103.922 1 47.87 ? O5B NAD 1001 B 1 HETATM 5 C C5B NAD . . . D 3 84.391 141.112 102.713 1 50.87 ? C5B NAD 1001 B 1 HETATM 6 C C4B NAD . . . D 3 83.611 141.682 101.527 1 51.78 ? C4B NAD 1001 B 1 HETATM 7 O O4B NAD . . . D 3 83.445 143.117 101.668 1 50.64 ? O4B NAD 1001 B 1 HETATM 8 C C3B NAD . . . D 3 84.341 141.42 100.221 1 51.03 ? C3B NAD 1001 B 1 HETATM 9 O O3B NAD . . . D 3 83.39 140.919 99.258 1 54.3 ? O3B NAD 1001 B 1 HETATM 10 C C2B NAD . . . D 3 84.852 142.771 99.766 1 51.34 ? C2B NAD 1001 B 1 HETATM 11 O O2B NAD . . . D 3 84.7 142.919 98.338 1 54.97 ? O2B NAD 1001 B 1 HETATM 12 C C1B NAD . . . D 3 83.973 143.775 100.492 1 51.09 ? C1B NAD 1001 B 1 HETATM 13 N N9A NAD . . . D 3 84.734 144.973 100.927 1 49.89 ? N9A NAD 1001 B 1 HETATM 14 C C8A NAD . . . D 3 84.13 146.189 101.095 1 51.17 ? C8A NAD 1001 B 1 HETATM 15 N N7A NAD . . . D 3 85.025 147.042 101.607 1 50.34 ? N7A NAD 1001 B 1 HETATM 16 C C5A NAD . . . D 3 86.108 146.318 101.722 1 49.4 ? C5A NAD 1001 B 1 HETATM 17 C C6A NAD . . . D 3 87.311 146.811 102.218 1 47.82 ? C6A NAD 1001 B 1 HETATM 18 N N6A NAD . . . D 3 87.406 148.054 102.69 1 49.98 ? N6A NAD 1001 B 1 HETATM 19 N N1A NAD . . . D 3 88.359 145.987 102.27 1 46.06 ? N1A NAD 1001 B 1 HETATM 20 C C2A NAD . . . D 3 88.25 144.712 101.86 1 48.59 ? C2A NAD 1001 B 1 HETATM 21 N N3A NAD . . . D 3 87.1 144.223 101.391 1 47.63 ? N3A NAD 1001 B 1 HETATM 22 C C4A NAD . . . D 3 86.022 145.019 101.312 1 49.67 ? C4A NAD 1001 B 1 HETATM 23 O O3 NAD . . . D 3 83.877 138.771 104.692 1 43.36 ? O3 NAD 1001 B 1 HETATM 24 P PN NAD . . . D 3 85.323 138.606 105.365 1 38.52 ? PN NAD 1001 B 1 HETATM 25 O O1N NAD . . . D 3 85.646 139.749 106.265 1 36.46 ? O1N NAD 1001 B 1 HETATM 26 O O2N NAD . . . D 3 86.282 138.28 104.287 1 41.94 ? O2N NAD 1001 B 1 HETATM 27 O O5D NAD . . . D 3 85.132 137.311 106.289 1 40.62 ? O5D NAD 1001 B 1 HETATM 28 C C5D NAD . . . D 3 85.049 137.475 107.715 1 43.27 ? C5D NAD 1001 B 1 HETATM 29 C C4D NAD . . . D 3 83.895 136.658 108.269 1 45.03 ? C4D NAD 1001 B 1 HETATM 30 O O4D NAD . . . D 3 83.888 135.355 107.632 1 47.39 ? O4D NAD 1001 B 1 HETATM 31 C C3D NAD . . . D 3 84.11 136.429 109.775 1 44.3 ? C3D NAD 1001 B 1 HETATM 32 O O3D NAD . . . D 3 82.864 136.568 110.474 1 41.26 ? O3D NAD 1001 B 1 HETATM 33 C C2D NAD . . . D 3 84.564 135.01 109.864 1 44.74 ? C2D NAD 1001 B 1 HETATM 34 O O2D NAD . . . D 3 84.128 134.419 111.076 1 43.62 ? O2D NAD 1001 B 1 HETATM 35 C C1D NAD . . . D 3 83.895 134.359 108.678 1 47.45 ? C1D NAD 1001 B 1 HETATM 36 N N1N NAD . . . D 3 84.631 133.162 108.242 1 47.58 ? N1N NAD 1001 B 1 HETATM 37 C C2N NAD . . . D 3 85.663 132.675 109.021 1 46.75 ? C2N NAD 1001 B 1 HETATM 38 C C3N NAD . . . D 3 86.372 131.559 108.61 1 48.33 ? C3N NAD 1001 B 1 HETATM 39 C C7N NAD . . . D 3 87.507 131.036 109.49 1 49.96 ? C7N NAD 1001 B 1 HETATM 40 O O7N NAD . . . D 3 87.999 129.92 109.363 1 50.75 ? O7N NAD 1001 B 1 HETATM 41 N N7N NAD . . . D 3 87.89 131.932 110.39 1 52 ? N7N NAD 1001 B 1 HETATM 42 C C4N NAD . . . D 3 86.044 130.916 107.411 1 46.68 ? C4N NAD 1001 B 1 HETATM 43 C C5N NAD . . . D 3 85.004 131.395 106.618 1 47.3 ? C5N NAD 1001 B 1 HETATM 44 C C6N NAD . . . D 3 84.294 132.518 107.029 1 48.66 ? C6N NAD 1001 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #