data_1QAX # _model_server_result.job_id trnaSpCseR3xcZhthKGBAQ _model_server_result.datetime_utc '2024-12-04 05:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 1QAX # _exptl.entry_id 1QAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 906.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-HYDROXY-3-METHYLGLUTARYL-COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QAX _cell.length_a 228.7 _cell.length_b 228.7 _cell.length_c 228.7 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 296 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 296 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 296 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 796 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H39 N7 O20 P3 S -5' _chem_comp.formula_weight 906.62 _chem_comp.id HMG _chem_comp.mon_nstd_flag . _chem_comp.name '3-HYDROXY-3-METHYLGLUTARYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (S)-HMG-COA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P2A O5A HMG doub 150 n n P2A O4A HMG sing 151 n n P2A O3A HMG sing 152 n n P2A O6A HMG sing 153 n n O3A P1A HMG sing 154 n n O6A CCP HMG sing 155 n n P1A O1A HMG doub 156 n n P1A O2A HMG sing 157 n n P1A O5B HMG sing 158 n n O5B C5B HMG sing 159 n n C5B C4B HMG sing 160 n n C5B "H5'1" HMG sing 161 n n C5B "H5'2" HMG sing 162 n n C4B O4B HMG sing 163 n n C4B C3B HMG sing 164 n n C4B H4B HMG sing 165 n n O4B C1B HMG sing 166 n n C3B O3B HMG sing 167 n n C3B C2B HMG sing 168 n n C3B H3B HMG sing 169 n n O3B P3B HMG sing 170 n n C2B O2B HMG sing 171 n n C2B C1B HMG sing 172 n n C2B H2' HMG sing 173 n n O2B H2B HMG sing 174 n n C1B N9A HMG sing 175 n n C1B H1B HMG sing 176 n n P3B O7A HMG doub 177 n n P3B O8A HMG sing 178 n n P3B O9A HMG sing 179 n n N9A C4A HMG sing 180 n y N9A C8A HMG sing 181 n y C4A N3A HMG sing 182 n y C4A C5A HMG doub 183 n y N3A C2A HMG doub 184 n y C2A N1A HMG sing 185 n y C2A H2A1 HMG sing 186 n n N1A C6A HMG doub 187 n y C6A C5A HMG sing 188 n y C6A N6A HMG sing 189 n n C5A N7A HMG sing 190 n y N7A C8A HMG doub 191 n y C8A H8A1 HMG sing 192 n n N6A H61A HMG sing 193 n n N6A H62A HMG sing 194 n n CBP CCP HMG sing 195 n n CBP CDP HMG sing 196 n n CBP CEP HMG sing 197 n n CBP CAP HMG sing 198 n n CCP H121 HMG sing 199 n n CCP H122 HMG sing 200 n n CDP H131 HMG sing 201 n n CDP H132 HMG sing 202 n n CDP H133 HMG sing 203 n n CEP H141 HMG sing 204 n n CEP H142 HMG sing 205 n n CEP H143 HMG sing 206 n n CAP OAP HMG sing 207 n n CAP C9P HMG sing 208 n n CAP H101 HMG sing 209 n n OAP H10 HMG sing 210 n n C9P O9P HMG doub 211 n n C9P N8P HMG sing 212 n n N8P C7P HMG sing 213 n n N8P H8 HMG sing 214 n n C7P C6P HMG sing 215 n n C7P H7P1 HMG sing 216 n n C7P H7P2 HMG sing 217 n n C6P C5P HMG sing 218 n n C6P H6P1 HMG sing 219 n n C6P H6P2 HMG sing 220 n n C5P O5P HMG doub 221 n n C5P N4P HMG sing 222 n n N4P C3P HMG sing 223 n n N4P H4 HMG sing 224 n n C3P C2P HMG sing 225 n n C3P H3P1 HMG sing 226 n n C3P H3P2 HMG sing 227 n n C2P S1P HMG sing 228 n n C2P H2P1 HMG sing 229 n n C2P H2P2 HMG sing 230 n n S1P C1 HMG sing 231 n n C1 O2 HMG doub 232 n n C1 C2 HMG sing 233 n n C2 C3 HMG sing 234 n n C2 H21 HMG sing 235 n n C2 H22 HMG sing 236 n n C3 O7 HMG sing 237 n n C3 C4 HMG sing 238 n n C3 C6 HMG sing 239 n n O7 HX HMG sing 240 n n C4 C5 HMG sing 241 n n C4 H41 HMG sing 242 n n C4 H42 HMG sing 243 n n C5 O3 HMG doub 244 n n C5 O4 HMG sing 245 n n C6 H61 HMG sing 246 n n C6 H62 HMG sing 247 n n C6 H63 HMG sing 248 n n # _atom_sites.entry_id 1QAX _atom_sites.fract_transf_matrix[1][1] 0.004373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HMG A 1 1002 1002 HMG HCO . D 3 NAD B 1 1001 1001 NAD NAD . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2003 2003 HOH HOH . E 4 HOH A 3 2004 2004 HOH HOH . E 4 HOH A 4 2005 2005 HOH HOH . E 4 HOH A 5 2013 2013 HOH HOH . E 4 HOH A 6 2014 2014 HOH HOH . E 4 HOH A 7 2016 2016 HOH HOH . E 4 HOH A 8 2018 2018 HOH HOH . E 4 HOH A 9 2021 2021 HOH HOH . E 4 HOH A 10 2023 2023 HOH HOH . E 4 HOH A 11 2024 2024 HOH HOH . E 4 HOH A 12 2025 2025 HOH HOH . E 4 HOH A 13 2026 2026 HOH HOH . E 4 HOH A 14 2027 2027 HOH HOH . E 4 HOH A 15 2028 2028 HOH HOH . E 4 HOH A 16 2030 2030 HOH HOH . E 4 HOH A 17 2032 2032 HOH HOH . E 4 HOH A 18 2034 2034 HOH HOH . E 4 HOH A 19 2036 2036 HOH HOH . E 4 HOH A 20 2040 2040 HOH HOH . E 4 HOH A 21 2041 2041 HOH HOH . E 4 HOH A 22 2042 2042 HOH HOH . E 4 HOH A 23 2046 2046 HOH HOH . E 4 HOH A 24 2047 2047 HOH HOH . E 4 HOH A 25 2048 2048 HOH HOH . E 4 HOH A 26 2049 2049 HOH HOH . E 4 HOH A 27 2050 2050 HOH HOH . E 4 HOH A 28 2053 2053 HOH HOH . E 4 HOH A 29 2055 2055 HOH HOH . E 4 HOH A 30 2057 2057 HOH HOH . E 4 HOH A 31 2058 2058 HOH HOH . E 4 HOH A 32 2060 2060 HOH HOH . E 4 HOH A 33 2063 2063 HOH HOH . E 4 HOH A 34 2065 2065 HOH HOH . E 4 HOH A 35 2066 2066 HOH HOH . E 4 HOH A 36 2069 2069 HOH HOH . E 4 HOH A 37 2070 2070 HOH HOH . E 4 HOH A 38 2071 2071 HOH HOH . E 4 HOH A 39 2072 2072 HOH HOH . F 4 HOH B 1 2002 2002 HOH HOH . F 4 HOH B 2 2006 2006 HOH HOH . F 4 HOH B 3 2007 2007 HOH HOH . F 4 HOH B 4 2008 2008 HOH HOH . F 4 HOH B 5 2009 2009 HOH HOH . F 4 HOH B 6 2010 2010 HOH HOH . F 4 HOH B 7 2011 2011 HOH HOH . F 4 HOH B 8 2012 2012 HOH HOH . F 4 HOH B 9 2017 2017 HOH HOH . F 4 HOH B 10 2019 2019 HOH HOH . F 4 HOH B 11 2020 2020 HOH HOH . F 4 HOH B 12 2022 2022 HOH HOH . F 4 HOH B 13 2029 2029 HOH HOH . F 4 HOH B 14 2031 2031 HOH HOH . F 4 HOH B 15 2033 2033 HOH HOH . F 4 HOH B 16 2035 2035 HOH HOH . F 4 HOH B 17 2037 2037 HOH HOH . F 4 HOH B 18 2038 2038 HOH HOH . F 4 HOH B 19 2039 2039 HOH HOH . F 4 HOH B 20 2043 2043 HOH HOH . F 4 HOH B 21 2044 2044 HOH HOH . F 4 HOH B 22 2045 2045 HOH HOH . F 4 HOH B 23 2051 2051 HOH HOH . F 4 HOH B 24 2052 2052 HOH HOH . F 4 HOH B 25 2054 2054 HOH HOH . F 4 HOH B 26 2056 2056 HOH HOH . F 4 HOH B 27 2061 2061 HOH HOH . F 4 HOH B 28 2062 2062 HOH HOH . F 4 HOH B 29 2064 2064 HOH HOH . F 4 HOH B 30 2067 2067 HOH HOH . F 4 HOH B 31 2068 2068 HOH HOH . F 4 HOH B 32 2073 2073 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P2A HMG . . . C 2 71.289 122.69 104.229 1 68.17 ? P2A HMG 1002 A 1 HETATM 2 O O5A HMG . . . C 2 70.915 123.76 103.265 1 68.37 ? O5A HMG 1002 A 1 HETATM 3 O O4A HMG . . . C 2 72.299 121.675 103.79 1 68.5 ? O4A HMG 1002 A 1 HETATM 4 O O3A HMG . . . C 2 69.957 121.896 104.729 1 66.95 ? O3A HMG 1002 A 1 HETATM 5 O O6A HMG . . . C 2 71.812 123.397 105.593 1 66.19 ? O6A HMG 1002 A 1 HETATM 6 P P1A HMG . . . C 2 68.505 122.22 105.384 1 64.98 ? P1A HMG 1002 A 1 HETATM 7 O O1A HMG . . . C 2 67.463 121.706 104.45 1 67.23 ? O1A HMG 1002 A 1 HETATM 8 O O2A HMG . . . C 2 68.424 123.641 105.802 1 66.91 ? O2A HMG 1002 A 1 HETATM 9 O O5B HMG . . . C 2 68.495 121.29 106.716 1 64.85 ? O5B HMG 1002 A 1 HETATM 10 C C5B HMG . . . C 2 67.378 121.296 107.64 1 63.83 ? C5B HMG 1002 A 1 HETATM 11 C C4B HMG . . . C 2 67.883 120.945 109.036 1 63.66 ? C4B HMG 1002 A 1 HETATM 12 O O4B HMG . . . C 2 69.209 121.508 109.195 1 59.66 ? O4B HMG 1002 A 1 HETATM 13 C C3B HMG . . . C 2 66.981 121.549 110.116 1 65.09 ? C3B HMG 1002 A 1 HETATM 14 O O3B HMG . . . C 2 66.211 120.536 110.787 1 74.76 ? O3B HMG 1002 A 1 HETATM 15 C C2B HMG . . . C 2 67.908 122.209 111.095 1 61.2 ? C2B HMG 1002 A 1 HETATM 16 O O2B HMG . . . C 2 68.127 121.377 112.248 1 58.27 ? O2B HMG 1002 A 1 HETATM 17 C C1B HMG . . . C 2 69.208 122.411 110.335 1 55.64 ? C1B HMG 1002 A 1 HETATM 18 P P3B HMG . . . C 2 64.615 120.547 110.667 1 79.14 ? P3B HMG 1002 A 1 HETATM 19 O O7A HMG . . . C 2 64.246 121.902 110.16 1 82.2 ? O7A HMG 1002 A 1 HETATM 20 O O8A HMG . . . C 2 64.316 119.469 109.691 1 83.44 ? O8A HMG 1002 A 1 HETATM 21 O O9A HMG . . . C 2 64.09 120.258 112.001 1 80.55 ? O9A HMG 1002 A 1 HETATM 22 N N9A HMG . . . C 2 69.308 123.838 109.893 1 47.33 ? N9A HMG 1002 A 1 HETATM 23 C C4A HMG . . . C 2 69.005 124.875 110.716 1 43.1 ? C4A HMG 1002 A 1 HETATM 24 N N3A HMG . . . C 2 68.593 125.12 111.993 1 41.88 ? N3A HMG 1002 A 1 HETATM 25 C C2A HMG . . . C 2 68.404 126.377 112.422 1 39.3 ? C2A HMG 1002 A 1 HETATM 26 N N1A HMG . . . C 2 68.623 127.421 111.604 1 37.25 ? N1A HMG 1002 A 1 HETATM 27 C C6A HMG . . . C 2 69.032 127.23 110.323 1 38.56 ? C6A HMG 1002 A 1 HETATM 28 C C5A HMG . . . C 2 69.231 125.921 109.872 1 41.45 ? C5A HMG 1002 A 1 HETATM 29 N N7A HMG . . . C 2 69.622 125.623 108.66 1 43.31 ? N7A HMG 1002 A 1 HETATM 30 C C8A HMG . . . C 2 69.677 124.286 108.66 1 45.79 ? C8A HMG 1002 A 1 HETATM 31 N N6A HMG . . . C 2 69.228 128.279 109.501 1 33.47 ? N6A HMG 1002 A 1 HETATM 32 C CBP HMG . . . C 2 73.964 124.24 106.665 1 55.6 ? CBP HMG 1002 A 1 HETATM 33 C CCP HMG . . . C 2 72.912 124.317 105.574 1 59.16 ? CCP HMG 1002 A 1 HETATM 34 C CDP HMG . . . C 2 74.052 125.574 107.434 1 55.22 ? CDP HMG 1002 A 1 HETATM 35 C CEP HMG . . . C 2 73.579 123.191 107.728 1 55.56 ? CEP HMG 1002 A 1 HETATM 36 C CAP HMG . . . C 2 75.29 123.862 105.978 1 51.15 ? CAP HMG 1002 A 1 HETATM 37 O OAP HMG . . . C 2 75.547 124.43 104.685 1 53.07 ? OAP HMG 1002 A 1 HETATM 38 C C9P HMG . . . C 2 76.608 123.453 106.643 1 49.9 ? C9P HMG 1002 A 1 HETATM 39 O O9P HMG . . . C 2 76.862 122.263 106.882 1 45.7 ? O9P HMG 1002 A 1 HETATM 40 N N8P HMG . . . C 2 77.455 124.45 106.896 1 47.71 ? N8P HMG 1002 A 1 HETATM 41 C C7P HMG . . . C 2 78.762 124.284 107.528 1 49.8 ? C7P HMG 1002 A 1 HETATM 42 C C6P HMG . . . C 2 79.391 125.616 107.929 1 46.9 ? C6P HMG 1002 A 1 HETATM 43 C C5P HMG . . . C 2 80.111 125.562 109.277 1 47.32 ? C5P HMG 1002 A 1 HETATM 44 O O5P HMG . . . C 2 80.467 124.489 109.785 1 44.87 ? O5P HMG 1002 A 1 HETATM 45 N N4P HMG . . . C 2 80.337 126.739 109.848 1 46.29 ? N4P HMG 1002 A 1 HETATM 46 C C3P HMG . . . C 2 81.004 126.911 111.133 1 48.51 ? C3P HMG 1002 A 1 HETATM 47 C C2P HMG . . . C 2 82.332 127.628 111 1 46.48 ? C2P HMG 1002 A 1 HETATM 48 S S1P HMG . . . C 2 83.482 126.745 109.921 1 47.04 ? S1P HMG 1002 A 1 HETATM 49 C C1 HMG . . . C 2 84.728 127.975 109.759 1 40.06 ? C1 HMG 1002 A 1 HETATM 50 O O2 HMG . . . C 2 84.667 129.096 110.31 1 36.81 ? O2 HMG 1002 A 1 HETATM 51 C C2 HMG . . . C 2 85.936 127.66 108.883 1 35.25 ? C2 HMG 1002 A 1 HETATM 52 C C3 HMG . . . C 2 86.119 126.199 108.457 1 29.31 ? C3 HMG 1002 A 1 HETATM 53 O O7 HMG . . . C 2 87.312 126.111 107.677 1 31.51 ? O7 HMG 1002 A 1 HETATM 54 C C4 HMG . . . C 2 86.257 125.334 109.721 1 30.49 ? C4 HMG 1002 A 1 HETATM 55 C C5 HMG . . . C 2 86.555 123.85 109.478 1 31.2 ? C5 HMG 1002 A 1 HETATM 56 O O3 HMG . . . C 2 86.362 123.028 110.407 1 31.5 ? O3 HMG 1002 A 1 HETATM 57 O O4 HMG . . . C 2 86.984 123.502 108.368 1 31.75 ? O4 HMG 1002 A 1 HETATM 58 C C6 HMG . . . C 2 84.93 125.747 107.582 1 29.84 ? C6 HMG 1002 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 58 #