data_1QAY # _model_server_result.job_id q5wYwdJx_h3CJ32rr1tKDA _model_server_result.datetime_utc '2024-12-04 16:44:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1QAY # _exptl.entry_id 1QAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QAY _cell.length_a 228.5 _cell.length_b 228.5 _cell.length_c 228.5 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 257 n n PA O2A NAD sing 258 n n PA O5B NAD sing 259 n n PA O3 NAD sing 260 n n O2A HOA2 NAD sing 261 n n O5B C5B NAD sing 262 n n C5B C4B NAD sing 263 n n C5B H51A NAD sing 264 n n C5B H52A NAD sing 265 n n C4B O4B NAD sing 266 n n C4B C3B NAD sing 267 n n C4B H4B NAD sing 268 n n O4B C1B NAD sing 269 n n C3B O3B NAD sing 270 n n C3B C2B NAD sing 271 n n C3B H3B NAD sing 272 n n O3B HO3A NAD sing 273 n n C2B O2B NAD sing 274 n n C2B C1B NAD sing 275 n n C2B H2B NAD sing 276 n n O2B HO2A NAD sing 277 n n C1B N9A NAD sing 278 n n C1B H1B NAD sing 279 n n N9A C8A NAD sing 280 n y N9A C4A NAD sing 281 n y C8A N7A NAD doub 282 n y C8A H8A NAD sing 283 n n N7A C5A NAD sing 284 n y C5A C6A NAD sing 285 n y C5A C4A NAD doub 286 n y C6A N6A NAD sing 287 n n C6A N1A NAD doub 288 n y N6A H61A NAD sing 289 n n N6A H62A NAD sing 290 n n N1A C2A NAD sing 291 n y C2A N3A NAD doub 292 n y C2A H2A NAD sing 293 n n N3A C4A NAD sing 294 n y O3 PN NAD sing 295 n n PN O1N NAD doub 296 n n PN O2N NAD sing 297 n n PN O5D NAD sing 298 n n O5D C5D NAD sing 299 n n C5D C4D NAD sing 300 n n C5D H51N NAD sing 301 n n C5D H52N NAD sing 302 n n C4D O4D NAD sing 303 n n C4D C3D NAD sing 304 n n C4D H4D NAD sing 305 n n O4D C1D NAD sing 306 n n C3D O3D NAD sing 307 n n C3D C2D NAD sing 308 n n C3D H3D NAD sing 309 n n O3D HO3N NAD sing 310 n n C2D O2D NAD sing 311 n n C2D C1D NAD sing 312 n n C2D H2D NAD sing 313 n n O2D HO2N NAD sing 314 n n C1D N1N NAD sing 315 n n C1D H1D NAD sing 316 n n N1N C2N NAD sing 317 n y N1N C6N NAD doub 318 n y C2N C3N NAD doub 319 n y C2N H2N NAD sing 320 n n C3N C7N NAD sing 321 n n C3N C4N NAD sing 322 n y C7N O7N NAD doub 323 n n C7N N7N NAD sing 324 n n N7N H71N NAD sing 325 n n N7N H72N NAD sing 326 n n C4N C5N NAD doub 327 n y C4N H4N NAD sing 328 n n C5N C6N NAD sing 329 n y C5N H5N NAD sing 330 n n C6N H6N NAD sing 331 n n # _atom_sites.entry_id 1QAY _atom_sites.fract_transf_matrix[1][1] 0.004376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MEV A 1 1002 1002 MEV MEV . D 3 NAD B 1 1001 1001 NAD NAD . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2005 2005 HOH HOH . E 4 HOH A 5 2007 2007 HOH HOH . E 4 HOH A 6 2009 2009 HOH HOH . E 4 HOH A 7 2010 2010 HOH HOH . E 4 HOH A 8 2012 2012 HOH HOH . E 4 HOH A 9 2014 2014 HOH HOH . E 4 HOH A 10 2016 2016 HOH HOH . E 4 HOH A 11 2018 2018 HOH HOH . E 4 HOH A 12 2020 2020 HOH HOH . E 4 HOH A 13 2022 2022 HOH HOH . E 4 HOH A 14 2027 2027 HOH HOH . E 4 HOH A 15 2028 2028 HOH HOH . E 4 HOH A 16 2029 2029 HOH HOH . E 4 HOH A 17 2033 2033 HOH HOH . E 4 HOH A 18 2038 2038 HOH HOH . E 4 HOH A 19 2041 2041 HOH HOH . E 4 HOH A 20 2043 2043 HOH HOH . E 4 HOH A 21 2045 2045 HOH HOH . E 4 HOH A 22 2047 2047 HOH HOH . E 4 HOH A 23 2050 2050 HOH HOH . E 4 HOH A 24 2054 2054 HOH HOH . E 4 HOH A 25 2055 2055 HOH HOH . E 4 HOH A 26 2057 2057 HOH HOH . E 4 HOH A 27 2058 2058 HOH HOH . E 4 HOH A 28 2059 2059 HOH HOH . E 4 HOH A 29 2061 2061 HOH HOH . F 4 HOH B 1 2004 2004 HOH HOH . F 4 HOH B 2 2006 2006 HOH HOH . F 4 HOH B 3 2008 2008 HOH HOH . F 4 HOH B 4 2011 2011 HOH HOH . F 4 HOH B 5 2013 2013 HOH HOH . F 4 HOH B 6 2015 2015 HOH HOH . F 4 HOH B 7 2017 2017 HOH HOH . F 4 HOH B 8 2019 2019 HOH HOH . F 4 HOH B 9 2021 2021 HOH HOH . F 4 HOH B 10 2023 2023 HOH HOH . F 4 HOH B 11 2024 2024 HOH HOH . F 4 HOH B 12 2025 2025 HOH HOH . F 4 HOH B 13 2026 2026 HOH HOH . F 4 HOH B 14 2030 2030 HOH HOH . F 4 HOH B 15 2031 2031 HOH HOH . F 4 HOH B 16 2032 2032 HOH HOH . F 4 HOH B 17 2034 2034 HOH HOH . F 4 HOH B 18 2035 2035 HOH HOH . F 4 HOH B 19 2036 2036 HOH HOH . F 4 HOH B 20 2037 2037 HOH HOH . F 4 HOH B 21 2039 2039 HOH HOH . F 4 HOH B 22 2040 2040 HOH HOH . F 4 HOH B 23 2042 2042 HOH HOH . F 4 HOH B 24 2044 2044 HOH HOH . F 4 HOH B 25 2046 2046 HOH HOH . F 4 HOH B 26 2048 2048 HOH HOH . F 4 HOH B 27 2049 2049 HOH HOH . F 4 HOH B 28 2051 2051 HOH HOH . F 4 HOH B 29 2052 2052 HOH HOH . F 4 HOH B 30 2053 2053 HOH HOH . F 4 HOH B 31 2056 2056 HOH HOH . F 4 HOH B 32 2060 2060 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 82.773 139.816 104.318 1 51.83 ? PA NAD 1001 B 1 HETATM 2 O O1A NAD . . . D 3 81.904 140.37 105.382 1 51.74 ? O1A NAD 1001 B 1 HETATM 3 O O2A NAD . . . D 3 82.082 139.41 103.066 1 51.42 ? O2A NAD 1001 B 1 HETATM 4 O O5B NAD . . . D 3 83.873 140.923 103.953 1 51.23 ? O5B NAD 1001 B 1 HETATM 5 C C5B NAD . . . D 3 84.518 140.897 102.675 1 54.33 ? C5B NAD 1001 B 1 HETATM 6 C C4B NAD . . . D 3 83.74 141.759 101.702 1 55.34 ? C4B NAD 1001 B 1 HETATM 7 O O4B NAD . . . D 3 83.876 143.145 102.073 1 56.27 ? O4B NAD 1001 B 1 HETATM 8 C C3B NAD . . . D 3 84.297 141.582 100.306 1 56.15 ? C3B NAD 1001 B 1 HETATM 9 O O3B NAD . . . D 3 83.301 140.994 99.459 1 57.33 ? O3B NAD 1001 B 1 HETATM 10 C C2B NAD . . . D 3 84.647 142.978 99.815 1 56.58 ? C2B NAD 1001 B 1 HETATM 11 O O2B NAD . . . D 3 83.936 143.275 98.6 1 56.92 ? O2B NAD 1001 B 1 HETATM 12 C C1B NAD . . . D 3 84.194 143.916 100.904 1 57.58 ? C1B NAD 1001 B 1 HETATM 13 N N9A NAD . . . D 3 85.242 144.92 101.231 1 57.81 ? N9A NAD 1001 B 1 HETATM 14 C C8A NAD . . . D 3 84.911 146.236 101.271 1 57.75 ? C8A NAD 1001 B 1 HETATM 15 N N7A NAD . . . D 3 85.976 146.928 101.658 1 58.97 ? N7A NAD 1001 B 1 HETATM 16 C C5A NAD . . . D 3 86.891 146.018 101.825 1 56.84 ? C5A NAD 1001 B 1 HETATM 17 C C6A NAD . . . D 3 88.181 146.312 102.23 1 55.53 ? C6A NAD 1001 B 1 HETATM 18 N N6A NAD . . . D 3 88.549 147.574 102.469 1 52.04 ? N6A NAD 1001 B 1 HETATM 19 N N1A NAD . . . D 3 89.058 145.299 102.368 1 54.99 ? N1A NAD 1001 B 1 HETATM 20 C C2A NAD . . . D 3 88.693 144.035 102.126 1 57.35 ? C2A NAD 1001 B 1 HETATM 21 N N3A NAD . . . D 3 87.449 143.738 101.736 1 58.48 ? N3A NAD 1001 B 1 HETATM 22 C C4A NAD . . . D 3 86.533 144.721 101.585 1 57.31 ? C4A NAD 1001 B 1 HETATM 23 O O3 NAD . . . D 3 83.655 138.574 104.89 1 43.03 ? O3 NAD 1001 B 1 HETATM 24 P PN NAD . . . D 3 85.093 138.286 105.599 1 34.07 ? PN NAD 1001 B 1 HETATM 25 O O1N NAD . . . D 3 85.425 139.347 106.588 1 32.89 ? O1N NAD 1001 B 1 HETATM 26 O O2N NAD . . . D 3 86.121 137.952 104.583 1 31.49 ? O2N NAD 1001 B 1 HETATM 27 O O5D NAD . . . D 3 84.851 136.936 106.441 1 42.61 ? O5D NAD 1001 B 1 HETATM 28 C C5D NAD . . . D 3 84.866 136.963 107.887 1 47.69 ? C5D NAD 1001 B 1 HETATM 29 C C4D NAD . . . D 3 83.539 136.431 108.394 1 49.75 ? C4D NAD 1001 B 1 HETATM 30 O O4D NAD . . . D 3 83.29 135.131 107.814 1 50.88 ? O4D NAD 1001 B 1 HETATM 31 C C3D NAD . . . D 3 83.56 136.266 109.897 1 49.84 ? C3D NAD 1001 B 1 HETATM 32 O O3D NAD . . . D 3 82.269 136.625 110.391 1 52.62 ? O3D NAD 1001 B 1 HETATM 33 C C2D NAD . . . D 3 83.808 134.776 110.128 1 47.14 ? C2D NAD 1001 B 1 HETATM 34 O O2D NAD . . . D 3 83.049 134.278 111.27 1 46.01 ? O2D NAD 1001 B 1 HETATM 35 C C1D NAD . . . D 3 83.308 134.126 108.854 1 50.6 ? C1D NAD 1001 B 1 HETATM 36 N N1N NAD . . . D 3 84.144 132.992 108.389 1 53.35 ? N1N NAD 1001 B 1 HETATM 37 C C2N NAD . . . D 3 85.272 132.526 109.109 1 54.77 ? C2N NAD 1001 B 1 HETATM 38 C C3N NAD . . . D 3 86.033 131.467 108.596 1 54.54 ? C3N NAD 1001 B 1 HETATM 39 C C7N NAD . . . D 3 87.276 130.941 109.345 1 53.7 ? C7N NAD 1001 B 1 HETATM 40 O O7N NAD . . . D 3 87.703 129.817 109.092 1 49.48 ? O7N NAD 1001 B 1 HETATM 41 N N7N NAD . . . D 3 87.878 131.701 110.255 1 49.25 ? N7N NAD 1001 B 1 HETATM 42 C C4N NAD . . . D 3 85.668 130.878 107.378 1 55.53 ? C4N NAD 1001 B 1 HETATM 43 C C5N NAD . . . D 3 84.559 131.331 106.668 1 55.45 ? C5N NAD 1001 B 1 HETATM 44 C C6N NAD . . . D 3 83.799 132.381 107.166 1 53.68 ? C6N NAD 1001 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #