data_1QAY # _model_server_result.job_id YR3YbkRCyM4ePPH33CM3mQ _model_server_result.datetime_utc '2024-12-12 10:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 1QAY # _exptl.entry_id 1QAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.149 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-MEVALONATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QAY _cell.length_a 228.5 _cell.length_b 228.5 _cell.length_c 228.5 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H11 O4 -1' _chem_comp.formula_weight 147.149 _chem_comp.id MEV _chem_comp.mon_nstd_flag . _chem_comp.name (R)-MEVALONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 O8 MEV sing 237 n n C8 C2 MEV sing 238 n n C8 H81 MEV sing 239 n n C8 H82 MEV sing 240 n n O8 HX2 MEV sing 241 n n C2 C3 MEV sing 242 n n C2 H21 MEV sing 243 n n C2 H22 MEV sing 244 n n C3 O7 MEV sing 245 n n C3 C4 MEV sing 246 n n C3 C6 MEV sing 247 n n O7 HX MEV sing 248 n n C4 C5 MEV sing 249 n n C4 H41 MEV sing 250 n n C4 H42 MEV sing 251 n n C5 O3 MEV doub 252 n n C5 O4 MEV sing 253 n n C6 H61 MEV sing 254 n n C6 H62 MEV sing 255 n n C6 H63 MEV sing 256 n n # _atom_sites.entry_id 1QAY _atom_sites.fract_transf_matrix[1][1] 0.004376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MEV A 1 1002 1002 MEV MEV . D 3 NAD B 1 1001 1001 NAD NAD . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2005 2005 HOH HOH . E 4 HOH A 5 2007 2007 HOH HOH . E 4 HOH A 6 2009 2009 HOH HOH . E 4 HOH A 7 2010 2010 HOH HOH . E 4 HOH A 8 2012 2012 HOH HOH . E 4 HOH A 9 2014 2014 HOH HOH . E 4 HOH A 10 2016 2016 HOH HOH . E 4 HOH A 11 2018 2018 HOH HOH . E 4 HOH A 12 2020 2020 HOH HOH . E 4 HOH A 13 2022 2022 HOH HOH . E 4 HOH A 14 2027 2027 HOH HOH . E 4 HOH A 15 2028 2028 HOH HOH . E 4 HOH A 16 2029 2029 HOH HOH . E 4 HOH A 17 2033 2033 HOH HOH . E 4 HOH A 18 2038 2038 HOH HOH . E 4 HOH A 19 2041 2041 HOH HOH . E 4 HOH A 20 2043 2043 HOH HOH . E 4 HOH A 21 2045 2045 HOH HOH . E 4 HOH A 22 2047 2047 HOH HOH . E 4 HOH A 23 2050 2050 HOH HOH . E 4 HOH A 24 2054 2054 HOH HOH . E 4 HOH A 25 2055 2055 HOH HOH . E 4 HOH A 26 2057 2057 HOH HOH . E 4 HOH A 27 2058 2058 HOH HOH . E 4 HOH A 28 2059 2059 HOH HOH . E 4 HOH A 29 2061 2061 HOH HOH . F 4 HOH B 1 2004 2004 HOH HOH . F 4 HOH B 2 2006 2006 HOH HOH . F 4 HOH B 3 2008 2008 HOH HOH . F 4 HOH B 4 2011 2011 HOH HOH . F 4 HOH B 5 2013 2013 HOH HOH . F 4 HOH B 6 2015 2015 HOH HOH . F 4 HOH B 7 2017 2017 HOH HOH . F 4 HOH B 8 2019 2019 HOH HOH . F 4 HOH B 9 2021 2021 HOH HOH . F 4 HOH B 10 2023 2023 HOH HOH . F 4 HOH B 11 2024 2024 HOH HOH . F 4 HOH B 12 2025 2025 HOH HOH . F 4 HOH B 13 2026 2026 HOH HOH . F 4 HOH B 14 2030 2030 HOH HOH . F 4 HOH B 15 2031 2031 HOH HOH . F 4 HOH B 16 2032 2032 HOH HOH . F 4 HOH B 17 2034 2034 HOH HOH . F 4 HOH B 18 2035 2035 HOH HOH . F 4 HOH B 19 2036 2036 HOH HOH . F 4 HOH B 20 2037 2037 HOH HOH . F 4 HOH B 21 2039 2039 HOH HOH . F 4 HOH B 22 2040 2040 HOH HOH . F 4 HOH B 23 2042 2042 HOH HOH . F 4 HOH B 24 2044 2044 HOH HOH . F 4 HOH B 25 2046 2046 HOH HOH . F 4 HOH B 26 2048 2048 HOH HOH . F 4 HOH B 27 2049 2049 HOH HOH . F 4 HOH B 28 2051 2051 HOH HOH . F 4 HOH B 29 2052 2052 HOH HOH . F 4 HOH B 30 2053 2053 HOH HOH . F 4 HOH B 31 2056 2056 HOH HOH . F 4 HOH B 32 2060 2060 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 MEV . . . C 2 85.222 127.665 109.755 1 37.31 ? C8 MEV 1002 A 1 HETATM 2 O O8 MEV . . . C 2 84.519 128.906 109.621 1 31.58 ? O8 MEV 1002 A 1 HETATM 3 C C2 MEV . . . C 2 85.835 127.256 108.401 1 38.22 ? C2 MEV 1002 A 1 HETATM 4 C C3 MEV . . . C 2 85.852 125.729 108.152 1 37.77 ? C3 MEV 1002 A 1 HETATM 5 O O7 MEV . . . C 2 86.558 125.446 106.937 1 39.33 ? O7 MEV 1002 A 1 HETATM 6 C C4 MEV . . . C 2 86.559 125.079 109.368 1 35.9 ? C4 MEV 1002 A 1 HETATM 7 C C5 MEV . . . C 2 86.528 123.552 109.453 1 37.45 ? C5 MEV 1002 A 1 HETATM 8 O O3 MEV . . . C 2 86.793 122.869 108.443 1 38.44 ? O3 MEV 1002 A 1 HETATM 9 O O4 MEV . . . C 2 86.257 123.026 110.552 1 35.05 ? O4 MEV 1002 A 1 HETATM 10 C C6 MEV . . . C 2 84.404 125.231 107.988 1 38.4 ? C6 MEV 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #