data_1QB7 # _model_server_result.job_id mS6smNJhG85N2_fHN4JggQ _model_server_result.datetime_utc '2025-01-10 13:17:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":325}' # _entry.id 1QB7 # _exptl.entry_id 1QB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QB7 _cell.length_a 63.72 _cell.length_b 63.72 _cell.length_c 235.77 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 39.295 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 145 A ASP 146 1_555 B MG MG . A MG 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc2 A OG1 THR 153 A THR 154 1_555 B MG MG . A MG 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc3 B MG MG . A MG 335 1_555 E O HOH . A HOH 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc4 B MG MG . A MG 335 1_555 E O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 86 n n C1 O2 CIT sing 87 n n C1 C2 CIT sing 88 n n O2 HO2 CIT sing 89 n n C2 C3 CIT sing 90 n n C2 H21 CIT sing 91 n n C2 H22 CIT sing 92 n n C3 O7 CIT sing 93 n n C3 C4 CIT sing 94 n n C3 C6 CIT sing 95 n n O7 HO7 CIT sing 96 n n C4 C5 CIT sing 97 n n C4 H41 CIT sing 98 n n C4 H42 CIT sing 99 n n C5 O3 CIT doub 100 n n C5 O4 CIT sing 101 n n O4 HO4 CIT sing 102 n n C6 O5 CIT doub 103 n n C6 O6 CIT sing 104 n n O6 HO6 CIT sing 105 n n # _atom_sites.entry_id 1QB7 _atom_sites.fract_transf_matrix[1][1] 0.015694 _atom_sites.fract_transf_matrix[1][2] 0.009061 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 335 335 MG MG . C 3 ADE A 1 300 300 ADE ADE . D 4 CIT A 1 325 325 CIT CIT . E 5 HOH A 1 351 351 HOH HOH . E 5 HOH A 2 352 352 HOH HOH . E 5 HOH A 3 353 353 HOH HOH . E 5 HOH A 4 354 354 HOH HOH . E 5 HOH A 5 355 355 HOH HOH . E 5 HOH A 6 356 356 HOH HOH . E 5 HOH A 7 357 357 HOH HOH . E 5 HOH A 8 358 358 HOH HOH . E 5 HOH A 9 359 359 HOH HOH . E 5 HOH A 10 360 360 HOH HOH . E 5 HOH A 11 361 361 HOH HOH . E 5 HOH A 12 362 362 HOH HOH . E 5 HOH A 13 363 363 HOH HOH . E 5 HOH A 14 364 364 HOH HOH . E 5 HOH A 15 365 365 HOH HOH . E 5 HOH A 16 366 366 HOH HOH . E 5 HOH A 17 367 367 HOH HOH . E 5 HOH A 18 368 368 HOH HOH . E 5 HOH A 19 369 369 HOH HOH . E 5 HOH A 20 370 370 HOH HOH . E 5 HOH A 21 371 371 HOH HOH . E 5 HOH A 22 372 372 HOH HOH . E 5 HOH A 23 373 373 HOH HOH . E 5 HOH A 24 374 374 HOH HOH . E 5 HOH A 25 375 375 HOH HOH . E 5 HOH A 26 376 376 HOH HOH . E 5 HOH A 27 377 377 HOH HOH . E 5 HOH A 28 378 378 HOH HOH . E 5 HOH A 29 379 379 HOH HOH . E 5 HOH A 30 380 380 HOH HOH . E 5 HOH A 31 381 381 HOH HOH . E 5 HOH A 32 382 382 HOH HOH . E 5 HOH A 33 383 383 HOH HOH . E 5 HOH A 34 384 384 HOH HOH . E 5 HOH A 35 385 385 HOH HOH . E 5 HOH A 36 386 386 HOH HOH . E 5 HOH A 37 387 387 HOH HOH . E 5 HOH A 38 388 388 HOH HOH . E 5 HOH A 39 389 389 HOH HOH . E 5 HOH A 40 390 390 HOH HOH . E 5 HOH A 41 391 391 HOH HOH . E 5 HOH A 42 392 392 HOH HOH . E 5 HOH A 43 393 393 HOH HOH . E 5 HOH A 44 394 394 HOH HOH . E 5 HOH A 45 395 395 HOH HOH . E 5 HOH A 46 396 396 HOH HOH . E 5 HOH A 47 397 397 HOH HOH . E 5 HOH A 48 398 398 HOH HOH . E 5 HOH A 49 399 399 HOH HOH . E 5 HOH A 50 400 400 HOH HOH . E 5 HOH A 51 401 401 HOH HOH . E 5 HOH A 52 402 402 HOH HOH . E 5 HOH A 53 403 403 HOH HOH . E 5 HOH A 54 404 404 HOH HOH . E 5 HOH A 55 405 405 HOH HOH . E 5 HOH A 56 406 406 HOH HOH . E 5 HOH A 57 407 407 HOH HOH . E 5 HOH A 58 408 408 HOH HOH . E 5 HOH A 59 409 409 HOH HOH . E 5 HOH A 60 410 410 HOH HOH . E 5 HOH A 61 411 411 HOH HOH . E 5 HOH A 62 412 412 HOH HOH . E 5 HOH A 63 413 413 HOH HOH . E 5 HOH A 64 414 414 HOH HOH . E 5 HOH A 65 415 415 HOH HOH . E 5 HOH A 66 416 416 HOH HOH . E 5 HOH A 67 417 417 HOH HOH . E 5 HOH A 68 418 418 HOH HOH . E 5 HOH A 69 419 419 HOH HOH . E 5 HOH A 70 420 420 HOH HOH . E 5 HOH A 71 421 421 HOH HOH . E 5 HOH A 72 422 422 HOH HOH . E 5 HOH A 73 423 423 HOH HOH . E 5 HOH A 74 424 424 HOH HOH . E 5 HOH A 75 425 425 HOH HOH . E 5 HOH A 76 426 426 HOH HOH . E 5 HOH A 77 427 427 HOH HOH . E 5 HOH A 78 428 428 HOH HOH . E 5 HOH A 79 429 429 HOH HOH . E 5 HOH A 80 430 430 HOH HOH . E 5 HOH A 81 431 431 HOH HOH . E 5 HOH A 82 432 432 HOH HOH . E 5 HOH A 83 433 433 HOH HOH . E 5 HOH A 84 434 434 HOH HOH . E 5 HOH A 85 435 435 HOH HOH . E 5 HOH A 86 436 436 HOH HOH . E 5 HOH A 87 437 437 HOH HOH . E 5 HOH A 88 438 438 HOH HOH . E 5 HOH A 89 439 439 HOH HOH . E 5 HOH A 90 440 440 HOH HOH . E 5 HOH A 91 441 441 HOH HOH . E 5 HOH A 92 442 442 HOH HOH . E 5 HOH A 93 443 443 HOH HOH . E 5 HOH A 94 444 444 HOH HOH . E 5 HOH A 95 445 445 HOH HOH . E 5 HOH A 96 446 446 HOH HOH . E 5 HOH A 97 447 447 HOH HOH . E 5 HOH A 98 448 448 HOH HOH . E 5 HOH A 99 449 449 HOH HOH . E 5 HOH A 100 450 450 HOH HOH . E 5 HOH A 101 451 451 HOH HOH . E 5 HOH A 102 452 452 HOH HOH . E 5 HOH A 103 453 453 HOH HOH . E 5 HOH A 104 454 454 HOH HOH . E 5 HOH A 105 455 455 HOH HOH . E 5 HOH A 106 456 456 HOH HOH . E 5 HOH A 107 457 457 HOH HOH . E 5 HOH A 108 458 458 HOH HOH . E 5 HOH A 109 459 459 HOH HOH . E 5 HOH A 110 460 460 HOH HOH . E 5 HOH A 111 461 461 HOH HOH . E 5 HOH A 112 462 462 HOH HOH . E 5 HOH A 113 463 463 HOH HOH . E 5 HOH A 114 464 464 HOH HOH . E 5 HOH A 115 465 465 HOH HOH . E 5 HOH A 116 466 466 HOH HOH . E 5 HOH A 117 467 467 HOH HOH . E 5 HOH A 118 468 468 HOH HOH . E 5 HOH A 119 469 469 HOH HOH . E 5 HOH A 120 470 470 HOH HOH . E 5 HOH A 121 471 471 HOH HOH . E 5 HOH A 122 472 472 HOH HOH . E 5 HOH A 123 473 473 HOH HOH . E 5 HOH A 124 474 474 HOH HOH . E 5 HOH A 125 475 475 HOH HOH . E 5 HOH A 126 476 476 HOH HOH . E 5 HOH A 127 477 477 HOH HOH . E 5 HOH A 128 478 478 HOH HOH . E 5 HOH A 129 479 479 HOH HOH . E 5 HOH A 130 480 480 HOH HOH . E 5 HOH A 131 481 481 HOH HOH . E 5 HOH A 132 482 482 HOH HOH . E 5 HOH A 133 483 483 HOH HOH . E 5 HOH A 134 484 484 HOH HOH . E 5 HOH A 135 485 485 HOH HOH . E 5 HOH A 136 486 486 HOH HOH . E 5 HOH A 137 487 487 HOH HOH . E 5 HOH A 138 488 488 HOH HOH . E 5 HOH A 139 490 490 HOH HOH . E 5 HOH A 140 491 491 HOH HOH . E 5 HOH A 141 492 492 HOH HOH . E 5 HOH A 142 493 493 HOH HOH . E 5 HOH A 143 494 494 HOH HOH . E 5 HOH A 144 495 495 HOH HOH . E 5 HOH A 145 496 496 HOH HOH . E 5 HOH A 146 497 497 HOH HOH . E 5 HOH A 147 498 498 HOH HOH . E 5 HOH A 148 499 499 HOH HOH . E 5 HOH A 149 500 500 HOH HOH . E 5 HOH A 150 501 501 HOH HOH . E 5 HOH A 151 502 502 HOH HOH . E 5 HOH A 152 503 503 HOH HOH . E 5 HOH A 153 504 504 HOH HOH . E 5 HOH A 154 505 505 HOH HOH . E 5 HOH A 155 506 506 HOH HOH . E 5 HOH A 156 507 507 HOH HOH . E 5 HOH A 157 508 508 HOH HOH . E 5 HOH A 158 509 509 HOH HOH . E 5 HOH A 159 510 510 HOH HOH . E 5 HOH A 160 511 511 HOH HOH . E 5 HOH A 161 512 512 HOH HOH . E 5 HOH A 162 513 513 HOH HOH . E 5 HOH A 163 514 514 HOH HOH . E 5 HOH A 164 515 515 HOH HOH . E 5 HOH A 165 516 516 HOH HOH . E 5 HOH A 166 517 517 HOH HOH . E 5 HOH A 167 518 518 HOH HOH . E 5 HOH A 168 519 519 HOH HOH . E 5 HOH A 169 520 520 HOH HOH . E 5 HOH A 170 521 521 HOH HOH . E 5 HOH A 171 522 522 HOH HOH . E 5 HOH A 172 523 523 HOH HOH . E 5 HOH A 173 524 524 HOH HOH . E 5 HOH A 174 525 525 HOH HOH . E 5 HOH A 175 526 526 HOH HOH . E 5 HOH A 176 527 527 HOH HOH . E 5 HOH A 177 528 528 HOH HOH . E 5 HOH A 178 529 529 HOH HOH . E 5 HOH A 179 530 530 HOH HOH . E 5 HOH A 180 531 531 HOH HOH . E 5 HOH A 181 532 532 HOH HOH . E 5 HOH A 182 533 533 HOH HOH . E 5 HOH A 183 534 534 HOH HOH . E 5 HOH A 184 535 535 HOH HOH . E 5 HOH A 185 536 536 HOH HOH . E 5 HOH A 186 537 537 HOH HOH . E 5 HOH A 187 538 538 HOH HOH . E 5 HOH A 188 539 539 HOH HOH . E 5 HOH A 189 540 540 HOH HOH . E 5 HOH A 190 541 541 HOH HOH . E 5 HOH A 191 542 542 HOH HOH . E 5 HOH A 192 543 543 HOH HOH . E 5 HOH A 193 544 544 HOH HOH . E 5 HOH A 194 545 545 HOH HOH . E 5 HOH A 195 546 546 HOH HOH . E 5 HOH A 196 547 547 HOH HOH . E 5 HOH A 197 548 548 HOH HOH . E 5 HOH A 198 549 549 HOH HOH . E 5 HOH A 199 550 550 HOH HOH . E 5 HOH A 200 551 551 HOH HOH . E 5 HOH A 201 552 552 HOH HOH . E 5 HOH A 202 553 553 HOH HOH . E 5 HOH A 203 554 554 HOH HOH . E 5 HOH A 204 555 555 HOH HOH . E 5 HOH A 205 556 556 HOH HOH . E 5 HOH A 206 557 557 HOH HOH . E 5 HOH A 207 558 558 HOH HOH . E 5 HOH A 208 559 559 HOH HOH . E 5 HOH A 209 560 560 HOH HOH . E 5 HOH A 210 561 561 HOH HOH . E 5 HOH A 211 562 562 HOH HOH . E 5 HOH A 212 563 563 HOH HOH . E 5 HOH A 213 564 564 HOH HOH . E 5 HOH A 214 565 565 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 4 31.894 26.389 15.886 1 34.93 ? C1 CIT 325 A 1 HETATM 2 O O1 CIT . . . D 4 32.871 25.945 15.223 1 39.94 ? O1 CIT 325 A 1 HETATM 3 O O2 CIT . . . D 4 31.122 27.259 15.351 1 38.97 ? O2 CIT 325 A 1 HETATM 4 C C2 CIT . . . D 4 31.381 25.592 17.077 1 26.29 ? C2 CIT 325 A 1 HETATM 5 C C3 CIT . . . D 4 30.481 24.358 16.736 1 21.92 ? C3 CIT 325 A 1 HETATM 6 O O7 CIT . . . D 4 31.145 23.372 15.936 1 22.73 ? O7 CIT 325 A 1 HETATM 7 C C4 CIT . . . D 4 29.192 24.898 16.025 1 19.42 ? C4 CIT 325 A 1 HETATM 8 C C5 CIT . . . D 4 28.31 23.76 15.458 1 19.93 ? C5 CIT 325 A 1 HETATM 9 O O3 CIT . . . D 4 28.414 22.571 15.896 1 16.39 ? O3 CIT 325 A 1 HETATM 10 O O4 CIT . . . D 4 27.233 24.079 14.864 1 17.44 ? O4 CIT 325 A 1 HETATM 11 C C6 CIT . . . D 4 30.009 23.701 18.021 1 21.63 ? C6 CIT 325 A 1 HETATM 12 O O5 CIT . . . D 4 30.537 22.632 18.386 1 16.43 ? O5 CIT 325 A 1 HETATM 13 O O6 CIT . . . D 4 29.487 24.449 18.876 1 19.57 ? O6 CIT 325 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #