data_1QBV
#
_model_server_result.job_id            -wckZSkO0TRa0rYzz8IiZA 
_model_server_result.datetime_utc      '2024-12-23 06:32:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qbv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":907}' 
#
_entry.id    1QBV 
#
_exptl.entry_id    1QBV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.471 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[PHENYLALANINYL-PROLINYL]-[2-(PYRIDIN-4-YLAMINO)-ETHYL]-AMINE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.52 
_cell.angle_gamma         90 
_cell.entry_id            1QBV 
_cell.length_a            70.9 
_cell.length_b            71.8 
_cell.length_c            72.7 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
covale ? covale1 C C GLU 8 E GLU 62 1_555 C N TYS 9 E TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 C C TYS 9 E TYS 63 1_555 C N LEU 10 E LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C21 H27 N5 O2' 
_chem_comp.formula_weight    381.471 
_chem_comp.id                PPX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[PHENYLALANINYL-PROLINYL]-[2-(PYRIDIN-4-YLAMINO)-ETHYL]-AMINE' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PPX sing 260 n n 
N1 HN11 PPX sing 261 n n 
N1 HN12 PPX sing 262 n n 
C2 C3 PPX sing 263 n n 
C2 C10 PPX sing 264 n n 
C2 H2 PPX sing 265 n n 
C3 C4 PPX sing 266 n n 
C3 H31 PPX sing 267 n n 
C3 H32 PPX sing 268 n n 
C4 C5 PPX doub 269 n y 
C4 C6 PPX sing 270 n y 
C5 C7 PPX sing 271 n y 
C5 H5 PPX sing 272 n n 
C6 C8 PPX doub 273 n y 
C6 H6 PPX sing 274 n n 
C7 C9 PPX doub 275 n y 
C7 H7 PPX sing 276 n n 
C8 C9 PPX sing 277 n y 
C8 H8 PPX sing 278 n n 
C9 H9 PPX sing 279 n n 
C10 O11 PPX doub 280 n n 
C10 N12 PPX sing 281 n n 
N12 C13 PPX sing 282 n n 
N12 C14 PPX sing 283 n n 
C13 C16 PPX sing 284 n n 
C13 H131 PPX sing 285 n n 
C13 H132 PPX sing 286 n n 
C14 C15 PPX sing 287 n n 
C14 C17 PPX sing 288 n n 
C14 H14 PPX sing 289 n n 
C15 C16 PPX sing 290 n n 
C15 H151 PPX sing 291 n n 
C15 H152 PPX sing 292 n n 
C16 H161 PPX sing 293 n n 
C16 H162 PPX sing 294 n n 
C17 O18 PPX doub 295 n n 
C17 N19 PPX sing 296 n n 
N19 C20 PPX sing 297 n n 
N19 H19 PPX sing 298 n n 
C20 C30 PPX sing 299 n n 
C20 H201 PPX sing 300 n n 
C20 H202 PPX sing 301 n n 
C30 N27 PPX sing 302 n n 
C30 H301 PPX sing 303 n n 
C30 H302 PPX sing 304 n n 
N27 C21 PPX sing 305 n n 
N27 H27 PPX sing 306 n n 
C21 C22 PPX doub 307 n y 
C21 C26 PPX sing 308 n y 
C22 C23 PPX sing 309 n y 
C22 H22 PPX sing 310 n n 
C23 N24 PPX doub 311 n y 
C23 H23 PPX sing 312 n n 
N24 C25 PPX sing 313 n y 
C25 C26 PPX doub 314 n y 
C25 H25 PPX sing 315 n n 
C26 H26 PPX sing 316 n n 
#
_atom_sites.entry_id                     1QBV 
_atom_sites.fract_transf_matrix[1][1]    0.014104 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002619 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 PPX H 1 907 907 PPX 907 . 
E 5 HOH L 1 311 311 HOH HOH . 
E 5 HOH L 2 329 329 HOH HOH . 
E 5 HOH L 3 330 330 HOH HOH . 
E 5 HOH L 4 331 331 HOH HOH . 
E 5 HOH L 5 370 370 HOH HOH . 
E 5 HOH L 6 372 372 HOH HOH . 
E 5 HOH L 7 375 375 HOH HOH . 
E 5 HOH L 8 397 397 HOH HOH . 
E 5 HOH L 9 401 401 HOH HOH . 
E 5 HOH L 10 424 424 HOH HOH . 
E 5 HOH L 11 452 452 HOH HOH . 
E 5 HOH L 12 462 462 HOH HOH . 
F 5 HOH H 1 301 301 HOH HOH . 
F 5 HOH H 2 302 302 HOH HOH . 
F 5 HOH H 3 303 303 HOH HOH . 
F 5 HOH H 4 304 304 HOH HOH . 
F 5 HOH H 5 305 305 HOH HOH . 
F 5 HOH H 6 306 306 HOH HOH . 
F 5 HOH H 7 307 307 HOH HOH . 
F 5 HOH H 8 308 308 HOH HOH . 
F 5 HOH H 9 309 309 HOH HOH . 
F 5 HOH H 10 310 310 HOH HOH . 
F 5 HOH H 11 312 312 HOH HOH . 
F 5 HOH H 12 313 313 HOH HOH . 
F 5 HOH H 13 314 314 HOH HOH . 
F 5 HOH H 14 315 315 HOH HOH . 
F 5 HOH H 15 316 316 HOH HOH . 
F 5 HOH H 16 317 317 HOH HOH . 
F 5 HOH H 17 318 318 HOH HOH . 
F 5 HOH H 18 319 319 HOH HOH . 
F 5 HOH H 19 320 320 HOH HOH . 
F 5 HOH H 20 321 321 HOH HOH . 
F 5 HOH H 21 322 322 HOH HOH . 
F 5 HOH H 22 324 324 HOH HOH . 
F 5 HOH H 23 325 325 HOH HOH . 
F 5 HOH H 24 327 327 HOH HOH . 
F 5 HOH H 25 328 328 HOH HOH . 
F 5 HOH H 26 332 332 HOH HOH . 
F 5 HOH H 27 333 333 HOH HOH . 
F 5 HOH H 28 334 334 HOH HOH . 
F 5 HOH H 29 335 335 HOH HOH . 
F 5 HOH H 30 336 336 HOH HOH . 
F 5 HOH H 31 337 337 HOH HOH . 
F 5 HOH H 32 339 339 HOH HOH . 
F 5 HOH H 33 340 340 HOH HOH . 
F 5 HOH H 34 341 341 HOH HOH . 
F 5 HOH H 35 342 342 HOH HOH . 
F 5 HOH H 36 343 343 HOH HOH . 
F 5 HOH H 37 345 345 HOH HOH . 
F 5 HOH H 38 348 348 HOH HOH . 
F 5 HOH H 39 350 350 HOH HOH . 
F 5 HOH H 40 351 351 HOH HOH . 
F 5 HOH H 41 354 354 HOH HOH . 
F 5 HOH H 42 355 355 HOH HOH . 
F 5 HOH H 43 356 356 HOH HOH . 
F 5 HOH H 44 357 357 HOH HOH . 
F 5 HOH H 45 358 358 HOH HOH . 
F 5 HOH H 46 360 360 HOH HOH . 
F 5 HOH H 47 361 361 HOH HOH . 
F 5 HOH H 48 362 362 HOH HOH . 
F 5 HOH H 49 363 363 HOH HOH . 
F 5 HOH H 50 364 364 HOH HOH . 
F 5 HOH H 51 365 365 HOH HOH . 
F 5 HOH H 52 366 366 HOH HOH . 
F 5 HOH H 53 367 367 HOH HOH . 
F 5 HOH H 54 368 368 HOH HOH . 
F 5 HOH H 55 369 369 HOH HOH . 
F 5 HOH H 56 373 373 HOH HOH . 
F 5 HOH H 57 374 374 HOH HOH . 
F 5 HOH H 58 376 376 HOH HOH . 
F 5 HOH H 59 377 377 HOH HOH . 
F 5 HOH H 60 380 380 HOH HOH . 
F 5 HOH H 61 383 383 HOH HOH . 
F 5 HOH H 62 385 385 HOH HOH . 
F 5 HOH H 63 387 387 HOH HOH . 
F 5 HOH H 64 388 388 HOH HOH . 
F 5 HOH H 65 389 389 HOH HOH . 
F 5 HOH H 66 393 393 HOH HOH . 
F 5 HOH H 67 394 394 HOH HOH . 
F 5 HOH H 68 400 400 HOH HOH . 
F 5 HOH H 69 402 402 HOH HOH . 
F 5 HOH H 70 403 403 HOH HOH . 
F 5 HOH H 71 404 404 HOH HOH . 
F 5 HOH H 72 405 405 HOH HOH . 
F 5 HOH H 73 406 406 HOH HOH . 
F 5 HOH H 74 407 407 HOH HOH . 
F 5 HOH H 75 410 410 HOH HOH . 
F 5 HOH H 76 411 411 HOH HOH . 
F 5 HOH H 77 412 412 HOH HOH . 
F 5 HOH H 78 413 413 HOH HOH . 
F 5 HOH H 79 414 414 HOH HOH . 
F 5 HOH H 80 415 415 HOH HOH . 
F 5 HOH H 81 421 421 HOH HOH . 
F 5 HOH H 82 422 422 HOH HOH . 
F 5 HOH H 83 423 423 HOH HOH . 
F 5 HOH H 84 425 425 HOH HOH . 
F 5 HOH H 85 426 426 HOH HOH . 
F 5 HOH H 86 427 427 HOH HOH . 
F 5 HOH H 87 428 428 HOH HOH . 
F 5 HOH H 88 429 429 HOH HOH . 
F 5 HOH H 89 430 430 HOH HOH . 
F 5 HOH H 90 431 431 HOH HOH . 
F 5 HOH H 91 432 432 HOH HOH . 
F 5 HOH H 92 436 436 HOH HOH . 
F 5 HOH H 93 437 437 HOH HOH . 
F 5 HOH H 94 438 438 HOH HOH . 
F 5 HOH H 95 439 439 HOH HOH . 
F 5 HOH H 96 440 440 HOH HOH . 
F 5 HOH H 97 442 442 HOH HOH . 
F 5 HOH H 98 443 443 HOH HOH . 
F 5 HOH H 99 453 453 HOH HOH . 
F 5 HOH H 100 456 456 HOH HOH . 
F 5 HOH H 101 458 458 HOH HOH . 
F 5 HOH H 102 459 459 HOH HOH . 
F 5 HOH H 103 461 461 HOH HOH . 
F 5 HOH H 104 463 463 HOH HOH . 
F 5 HOH H 105 464 464 HOH HOH . 
F 5 HOH H 106 466 466 HOH HOH . 
F 5 HOH H 107 467 467 HOH HOH . 
F 5 HOH H 108 468 468 HOH HOH . 
F 5 HOH H 109 469 469 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PPX . . . D 4 16.575 -16.957 23.518 1 22.82 ? N1 PPX 907 H 1 
HETATM 2 C C2 PPX . . . D 4 17.851 -16.186 23.667 1 25.54 ? C2 PPX 907 H 1 
HETATM 3 C C10 PPX . . . D 4 17.604 -14.837 22.963 1 24.84 ? C10 PPX 907 H 1 
HETATM 4 O O11 PPX . . . D 4 16.57 -14.215 23.19 1 26.66 ? O11 PPX 907 H 1 
HETATM 5 C C3 PPX . . . D 4 18.137 -15.971 25.161 1 28.76 ? C3 PPX 907 H 1 
HETATM 6 C C4 PPX . . . D 4 22.257 -14.81 25.497 1 34.93 ? C4 PPX 907 H 1 
HETATM 7 C C5 PPX . . . D 4 19.934 -14.391 25.984 1 32.23 ? C5 PPX 907 H 1 
HETATM 8 C C6 PPX . . . D 4 20.586 -16.45 24.993 1 36.96 ? C6 PPX 907 H 1 
HETATM 9 C C7 PPX . . . D 4 21.26 -13.989 26.022 1 35.13 ? C7 PPX 907 H 1 
HETATM 10 C C8 PPX . . . D 4 21.924 -16.056 25.027 1 39.2 ? C8 PPX 907 H 1 
HETATM 11 C C9 PPX . . . D 4 22.251 -14.802 25.541 1 34.93 ? C9 PPX 907 H 1 
HETATM 12 N N12 PPX . . . D 4 18.52 -14.427 22.064 1 23.96 ? N12 PPX 907 H 1 
HETATM 13 C C14 PPX . . . D 4 18.379 -13.143 21.349 1 23.1 ? C14 PPX 907 H 1 
HETATM 14 C C17 PPX . . . D 4 17.06 -13.064 20.596 1 25.1 ? C17 PPX 907 H 1 
HETATM 15 O O18 PPX . . . D 4 16.72 -13.966 19.834 1 25.34 ? O18 PPX 907 H 1 
HETATM 16 C C15 PPX . . . D 4 19.582 -13.155 20.372 1 24.41 ? C15 PPX 907 H 1 
HETATM 17 C C16 PPX . . . D 4 20.51 -14.234 20.912 1 24.17 ? C16 PPX 907 H 1 
HETATM 18 C C13 PPX . . . D 4 19.598 -15.261 21.476 1 24.33 ? C13 PPX 907 H 1 
HETATM 19 N N19 PPX . . . D 4 16.302 -11.996 20.811 1 21.83 ? N19 PPX 907 H 1 
HETATM 20 C C20 PPX . . . D 4 14.996 -11.785 20.177 1 19.2 ? C20 PPX 907 H 1 
HETATM 21 C C30 PPX . . . D 4 14.053 -11.04 21.076 1 21.86 ? C30 PPX 907 H 1 
HETATM 22 N N27 PPX . . . D 4 13.172 -11.983 21.665 1 21.53 ? N27 PPX 907 H 1 
HETATM 23 C C21 PPX . . . D 4 12.372 -11.656 22.674 1 22.13 ? C21 PPX 907 H 1 
HETATM 24 C C22 PPX . . . D 4 11.452 -12.613 23.063 1 22.06 ? C22 PPX 907 H 1 
HETATM 25 C C23 PPX . . . D 4 10.603 -12.362 24.144 1 22.5 ? C23 PPX 907 H 1 
HETATM 26 N N24 PPX . . . D 4 10.682 -11.213 24.814 1 22.62 ? N24 PPX 907 H 1 
HETATM 27 C C25 PPX . . . D 4 11.567 -10.259 24.456 1 21.95 ? C25 PPX 907 H 1 
HETATM 28 C C26 PPX . . . D 4 12.438 -10.457 23.384 1 22.49 ? C26 PPX 907 H 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           1104 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           28 
#