data_1QD5 # _model_server_result.job_id PkDgC1iVUcgDs8rYpRPKDw _model_server_result.datetime_utc '2024-10-12 04:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1QD5 # _exptl.entry_id 1QD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QD5 _cell.length_a 78.55 _cell.length_b 78.55 _cell.length_c 101.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1QD5 _atom_sites.fract_transf_matrix[1][1] 0.012731 _atom_sites.fract_transf_matrix[1][2] 0.00735 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 500 500 BOG BOG . C 2 BOG A 1 501 501 BOG BOG . D 2 BOG A 1 502 502 BOG BOG . E 2 BOG A 1 503 503 BOG BOG . F 2 BOG A 1 504 504 BOG BOG . G 3 HOH A 1 300 300 HOH HOH . G 3 HOH A 2 301 301 HOH HOH . G 3 HOH A 3 302 302 HOH HOH . G 3 HOH A 4 303 303 HOH HOH . G 3 HOH A 5 304 304 HOH HOH . G 3 HOH A 6 305 305 HOH HOH . G 3 HOH A 7 306 306 HOH HOH . G 3 HOH A 8 307 307 HOH HOH . G 3 HOH A 9 308 308 HOH HOH . G 3 HOH A 10 309 309 HOH HOH . G 3 HOH A 11 310 310 HOH HOH . G 3 HOH A 12 311 311 HOH HOH . G 3 HOH A 13 312 312 HOH HOH . G 3 HOH A 14 313 313 HOH HOH . G 3 HOH A 15 314 314 HOH HOH . G 3 HOH A 16 315 315 HOH HOH . G 3 HOH A 17 316 316 HOH HOH . G 3 HOH A 18 317 317 HOH HOH . G 3 HOH A 19 318 318 HOH HOH . G 3 HOH A 20 319 319 HOH HOH . G 3 HOH A 21 320 320 HOH HOH . G 3 HOH A 22 321 321 HOH HOH . G 3 HOH A 23 322 322 HOH HOH . G 3 HOH A 24 323 323 HOH HOH . G 3 HOH A 25 324 324 HOH HOH . G 3 HOH A 26 325 325 HOH HOH . G 3 HOH A 27 326 326 HOH HOH . G 3 HOH A 28 327 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 32.13 41.097 34.762 0.95 87.38 ? C1 BOG 500 A 1 HETATM 2 O O1 BOG . . . B 2 31.261 40.129 35.245 0.95 85.34 ? O1 BOG 500 A 1 HETATM 3 C C2 BOG . . . B 2 32.25 42.224 35.784 0.95 87.84 ? C2 BOG 500 A 1 HETATM 4 O O2 BOG . . . B 2 30.983 42.832 35.985 0.95 85.67 ? O2 BOG 500 A 1 HETATM 5 C C3 BOG . . . B 2 33.25 43.258 35.282 0.95 90.78 ? C3 BOG 500 A 1 HETATM 6 O O3 BOG . . . B 2 33.41 44.283 36.253 0.95 92.93 ? O3 BOG 500 A 1 HETATM 7 C C4 BOG . . . B 2 34.593 42.577 35.012 0.95 91.86 ? C4 BOG 500 A 1 HETATM 8 O O4 BOG . . . B 2 35.501 43.517 34.455 0.95 93.46 ? O4 BOG 500 A 1 HETATM 9 C C5 BOG . . . B 2 34.406 41.392 34.047 0.95 91.63 ? C5 BOG 500 A 1 HETATM 10 O O5 BOG . . . B 2 33.407 40.479 34.557 0.95 90.33 ? O5 BOG 500 A 1 HETATM 11 C C6 BOG . . . B 2 35.68 40.578 33.848 0.95 89.68 ? C6 BOG 500 A 1 HETATM 12 O O6 BOG . . . B 2 36.662 41.307 33.127 0.95 89.22 ? O6 BOG 500 A 1 HETATM 13 C C1' BOG . . . B 2 30.925 39.049 34.36 0.95 80.33 ? C1' BOG 500 A 1 HETATM 14 C C2' BOG . . . B 2 31.61 37.776 34.842 0.95 74.46 ? C2' BOG 500 A 1 HETATM 15 C C3' BOG . . . B 2 30.815 36.551 34.418 0.95 69.78 ? C3' BOG 500 A 1 HETATM 16 C C4' BOG . . . B 2 31.348 35.275 35.04 0.95 62.93 ? C4' BOG 500 A 1 HETATM 17 C C5' BOG . . . B 2 31.267 34.102 34.084 0.95 60.23 ? C5' BOG 500 A 1 HETATM 18 C C6' BOG . . . B 2 32.653 33.529 33.84 0.95 55.72 ? C6' BOG 500 A 1 HETATM 19 C C7' BOG . . . B 2 32.564 32.296 32.979 0.95 56.03 ? C7' BOG 500 A 1 HETATM 20 C C8' BOG . . . B 2 33.885 31.572 32.943 0.95 57.4 ? C8' BOG 500 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #