data_1QD5 # _model_server_result.job_id DHnZe-omjS-nJoKpERJAWQ _model_server_result.datetime_utc '2024-10-12 04:22:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1QD5 # _exptl.entry_id 1QD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QD5 _cell.length_a 78.55 _cell.length_b 78.55 _cell.length_c 101.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1QD5 _atom_sites.fract_transf_matrix[1][1] 0.012731 _atom_sites.fract_transf_matrix[1][2] 0.00735 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 500 500 BOG BOG . C 2 BOG A 1 501 501 BOG BOG . D 2 BOG A 1 502 502 BOG BOG . E 2 BOG A 1 503 503 BOG BOG . F 2 BOG A 1 504 504 BOG BOG . G 3 HOH A 1 300 300 HOH HOH . G 3 HOH A 2 301 301 HOH HOH . G 3 HOH A 3 302 302 HOH HOH . G 3 HOH A 4 303 303 HOH HOH . G 3 HOH A 5 304 304 HOH HOH . G 3 HOH A 6 305 305 HOH HOH . G 3 HOH A 7 306 306 HOH HOH . G 3 HOH A 8 307 307 HOH HOH . G 3 HOH A 9 308 308 HOH HOH . G 3 HOH A 10 309 309 HOH HOH . G 3 HOH A 11 310 310 HOH HOH . G 3 HOH A 12 311 311 HOH HOH . G 3 HOH A 13 312 312 HOH HOH . G 3 HOH A 14 313 313 HOH HOH . G 3 HOH A 15 314 314 HOH HOH . G 3 HOH A 16 315 315 HOH HOH . G 3 HOH A 17 316 316 HOH HOH . G 3 HOH A 18 317 317 HOH HOH . G 3 HOH A 19 318 318 HOH HOH . G 3 HOH A 20 319 319 HOH HOH . G 3 HOH A 21 320 320 HOH HOH . G 3 HOH A 22 321 321 HOH HOH . G 3 HOH A 23 322 322 HOH HOH . G 3 HOH A 24 323 323 HOH HOH . G 3 HOH A 25 324 324 HOH HOH . G 3 HOH A 26 325 325 HOH HOH . G 3 HOH A 27 326 326 HOH HOH . G 3 HOH A 28 327 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 2 51.504 30.886 41.261 0.99 83.02 ? C1 BOG 501 A 1 HETATM 2 O O1 BOG . . . C 2 50.954 29.629 41.05 0.99 80.44 ? O1 BOG 501 A 1 HETATM 3 C C2 BOG . . . C 2 52.946 30.739 41.769 0.99 85.09 ? C2 BOG 501 A 1 HETATM 4 O O2 BOG . . . C 2 52.938 30.143 43.061 0.99 83.67 ? O2 BOG 501 A 1 HETATM 5 C C3 BOG . . . C 2 53.637 32.105 41.842 0.99 85.41 ? C3 BOG 501 A 1 HETATM 6 O O3 BOG . . . C 2 55.01 31.934 42.169 0.99 85.93 ? O3 BOG 501 A 1 HETATM 7 C C4 BOG . . . C 2 53.511 32.829 40.501 0.99 84.44 ? C4 BOG 501 A 1 HETATM 8 O O4 BOG . . . C 2 54.058 34.137 40.603 0.99 83.08 ? O4 BOG 501 A 1 HETATM 9 C C5 BOG . . . C 2 52.037 32.913 40.104 0.99 84.18 ? C5 BOG 501 A 1 HETATM 10 O O5 BOG . . . C 2 51.477 31.587 40.01 0.99 84.25 ? O5 BOG 501 A 1 HETATM 11 C C6 BOG . . . C 2 51.812 33.596 38.765 0.99 83.63 ? C6 BOG 501 A 1 HETATM 12 O O6 BOG . . . C 2 52.524 32.944 37.724 0.99 82.71 ? O6 BOG 501 A 1 HETATM 13 C C1' BOG . . . C 2 49.628 29.337 41.554 0.99 78.06 ? C1' BOG 501 A 1 HETATM 14 C C2' BOG . . . C 2 48.849 28.505 40.543 0.99 74.41 ? C2' BOG 501 A 1 HETATM 15 C C3' BOG . . . C 2 48.621 27.092 41.052 0.99 70.75 ? C3' BOG 501 A 1 HETATM 16 C C4' BOG . . . C 2 47.296 26.519 40.581 0.99 67.58 ? C4' BOG 501 A 1 HETATM 17 C C5' BOG . . . C 2 47.398 25.025 40.354 0.99 62 ? C5' BOG 501 A 1 HETATM 18 C C6' BOG . . . C 2 46.533 24.6 39.19 0.99 61.2 ? C6' BOG 501 A 1 HETATM 19 C C7' BOG . . . C 2 46.452 23.084 39.1 0.99 57.99 ? C7' BOG 501 A 1 HETATM 20 C C8' BOG . . . C 2 45.351 22.68 38.142 0.99 52.6 ? C8' BOG 501 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #