data_1QD8 # _model_server_result.job_id '_UEg72cnlfwDF6FFbgXtRA' _model_server_result.datetime_utc '2025-03-06 09:05:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":13}' # _entry.id 1QD8 # _exptl.entry_id 1QD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QD8 _cell.length_a 28.71 _cell.length_b 28.71 _cell.length_c 66.77 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I 1 1 B,D,G,H 1 2 A,C,E,F,I 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -y+1/2,x+1/2,z-1/4 0 -1 0 1 0 0 0 0 1 14.355 14.355 -16.6925 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 RER _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 C 1 BGC A 8 BGC 2 n C RER 2 C 2 RER A 9 RER 2 n D BGC 1 D 1 BGC B 8 BGC 2 n D RER 2 D 2 RER B 9 RER # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MLU 1 A MLU 1 1_555 A N OMZ 2 A OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale2 A C OMZ 2 A OMZ 2 1_555 A N ASN 3 A ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale3 A OH OMZ 2 A OMZ 2 1_555 A C5 GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale4 A C ASN 3 A ASN 3 1_555 A N GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale5 A C GHP 4 A GHP 4 1_555 A N GHP 5 A GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale6 A C3 GHP 4 A GHP 4 1_555 A OCZ OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale7 A O4 GHP 4 A GHP 4 1_555 C C1 BGC . C BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 A C GHP 5 A GHP 5 1_555 A N OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale9 A C3 GHP 5 A GHP 5 1_555 A CG1 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale10 A C OMY 6 A OMY 6 1_555 A N 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale11 B C MLU 1 B MLU 1 1_555 B N OMZ 2 B OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale12 B C OMZ 2 B OMZ 2 1_555 B N ASN 3 B ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale13 B OH OMZ 2 B OMZ 2 1_555 B C5 GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale14 B C ASN 3 B ASN 3 1_555 B N GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale15 B C GHP 4 B GHP 4 1_555 B N GHP 5 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale16 B C3 GHP 4 B GHP 4 1_555 B OCZ OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale17 B O4 GHP 4 B GHP 4 1_555 D C1 BGC . D BGC 1 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.448 ? covale ? covale18 B O4 GHP 4 B GHP 4 1_555 D C1 BGC . D BGC 1 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.444 ? covale ? covale19 B C GHP 5 B GHP 5 1_555 B N OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale20 B C3 GHP 5 B GHP 5 1_555 B CG1 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? covale ? covale21 B C OMY 6 B OMY 6 1_555 B N 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale22 C O2 BGC . C BGC 1 1_555 C C1 RER . C RER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale23 D O2 BGC . D BGC 1 1_555 D C1 RER . D RER 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.165 ? covale ? covale24 D O2 BGC . D BGC 1 1_555 D C1 RER . D RER 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.495 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1QD8 _atom_sites.fract_transf_matrix[1][1] 0.034831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL A 1 12 12 CL CL . F 3 CL A 1 13 13 CL CL . G 4 AAC B 1 11 11 AAC AAC . H 3 CL B 1 12 12 CL CL . I 5 HOH A 1 110 110 HOH HOH . I 5 HOH A 2 111 111 HOH HOH . I 5 HOH A 3 112 112 HOH HOH . I 5 HOH A 4 113 113 HOH HOH . I 5 HOH A 5 114 114 HOH HOH . I 5 HOH A 6 115 115 HOH HOH . I 5 HOH A 7 116 116 HOH HOH . I 5 HOH A 8 117 117 HOH HOH . I 5 HOH A 9 118 118 HOH HOH . I 5 HOH A 10 119 119 HOH HOH . I 5 HOH A 11 120 120 HOH HOH . I 5 HOH A 12 121 121 HOH HOH . I 5 HOH A 13 122 122 HOH HOH . I 5 HOH A 14 123 123 HOH HOH . I 5 HOH A 15 124 124 HOH HOH . I 5 HOH A 16 125 125 HOH HOH . I 5 HOH A 17 126 126 HOH HOH . I 5 HOH A 18 127 127 HOH HOH . I 5 HOH A 19 128 128 HOH HOH . I 5 HOH A 20 129 129 HOH HOH . I 5 HOH A 21 130 130 HOH HOH . I 5 HOH A 22 131 131 HOH HOH . I 5 HOH A 23 132 132 HOH HOH . I 5 HOH A 24 133 133 HOH HOH . I 5 HOH A 25 134 134 HOH HOH . I 5 HOH A 26 135 135 HOH HOH . I 5 HOH A 27 136 136 HOH HOH . I 5 HOH A 28 137 137 HOH HOH . I 5 HOH A 29 138 138 HOH HOH . I 5 HOH A 30 139 139 HOH HOH . I 5 HOH A 31 140 140 HOH HOH . I 5 HOH A 32 141 141 HOH HOH . I 5 HOH A 33 142 142 HOH HOH . I 5 HOH A 34 143 143 HOH HOH . I 5 HOH A 35 144 144 HOH HOH . I 5 HOH A 36 145 145 HOH HOH . I 5 HOH A 37 146 146 HOH HOH . I 5 HOH A 38 147 147 HOH HOH . I 5 HOH A 39 148 148 HOH HOH . I 5 HOH A 40 149 149 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.788 _atom_site.Cartn_y 4.437 _atom_site.Cartn_z 5.737 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 5.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 13 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 62 _model_server_stats.create_model_time_ms 105 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #