data_1QDS # _model_server_result.job_id 5qeI0dAS911B1cqM8gT8Ow _model_server_result.datetime_utc '2025-07-28 20:21:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":350}' # _entry.id 1QDS # _exptl.entry_id 1QDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.031 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.09 _cell.angle_gamma 90 _cell.entry_id 1QDS _cell.length_a 99.26 _cell.length_b 52.79 _cell.length_c 58.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H5 O6 P' _chem_comp.formula_weight 156.031 _chem_comp.id PGA _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PGA sing 237 n n P O2P PGA doub 238 n n P O3P PGA sing 239 n n P O4P PGA sing 240 n n O1P C2 PGA sing 241 n n O3P HOP3 PGA sing 242 n n O4P HOP4 PGA sing 243 n n C2 C1 PGA sing 244 n n C2 H21 PGA sing 245 n n C2 H22 PGA sing 246 n n C1 O1 PGA doub 247 n n C1 O2 PGA sing 248 n n O2 HO2 PGA sing 249 n n # _atom_sites.entry_id 1QDS _atom_sites.fract_transf_matrix[1][1] 0.01007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00538 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGA A 1 350 350 PGA PGA . C 3 HOH A 1 351 1 HOH WAT . C 3 HOH A 2 352 2 HOH WAT . C 3 HOH A 3 353 3 HOH WAT . C 3 HOH A 4 354 4 HOH WAT . C 3 HOH A 5 355 5 HOH WAT . C 3 HOH A 6 356 6 HOH WAT . C 3 HOH A 7 357 7 HOH WAT . C 3 HOH A 8 358 8 HOH WAT . C 3 HOH A 9 359 9 HOH WAT . C 3 HOH A 10 360 10 HOH WAT . C 3 HOH A 11 361 11 HOH WAT . C 3 HOH A 12 362 12 HOH WAT . C 3 HOH A 13 363 13 HOH WAT . C 3 HOH A 14 364 14 HOH WAT . C 3 HOH A 15 365 15 HOH WAT . C 3 HOH A 16 366 16 HOH WAT . C 3 HOH A 17 367 17 HOH WAT . C 3 HOH A 18 368 18 HOH WAT . C 3 HOH A 19 369 19 HOH WAT . C 3 HOH A 20 370 20 HOH WAT . C 3 HOH A 21 371 21 HOH WAT . C 3 HOH A 22 372 22 HOH WAT . C 3 HOH A 23 373 23 HOH WAT . C 3 HOH A 24 374 24 HOH WAT . C 3 HOH A 25 375 25 HOH WAT . C 3 HOH A 26 376 26 HOH WAT . C 3 HOH A 27 377 27 HOH WAT . C 3 HOH A 28 378 28 HOH WAT . C 3 HOH A 29 379 29 HOH WAT . C 3 HOH A 30 380 30 HOH WAT . C 3 HOH A 31 381 31 HOH WAT . C 3 HOH A 32 382 32 HOH WAT . C 3 HOH A 33 383 33 HOH WAT . C 3 HOH A 34 384 34 HOH WAT . C 3 HOH A 35 385 35 HOH WAT . C 3 HOH A 36 386 36 HOH WAT . C 3 HOH A 37 387 37 HOH WAT . C 3 HOH A 38 388 38 HOH WAT . C 3 HOH A 39 389 39 HOH WAT . C 3 HOH A 40 390 40 HOH WAT . C 3 HOH A 41 391 41 HOH WAT . C 3 HOH A 42 392 42 HOH WAT . C 3 HOH A 43 393 43 HOH WAT . C 3 HOH A 44 394 44 HOH WAT . C 3 HOH A 45 395 45 HOH WAT . C 3 HOH A 46 396 46 HOH WAT . C 3 HOH A 47 397 48 HOH WAT . C 3 HOH A 48 398 49 HOH WAT . C 3 HOH A 49 399 50 HOH WAT . C 3 HOH A 50 400 51 HOH WAT . C 3 HOH A 51 401 52 HOH WAT . C 3 HOH A 52 402 53 HOH WAT . C 3 HOH A 53 403 54 HOH WAT . C 3 HOH A 54 404 55 HOH WAT . C 3 HOH A 55 405 56 HOH WAT . C 3 HOH A 56 406 57 HOH WAT . C 3 HOH A 57 407 58 HOH WAT . C 3 HOH A 58 408 59 HOH WAT . C 3 HOH A 59 409 60 HOH WAT . C 3 HOH A 60 410 61 HOH WAT . C 3 HOH A 61 411 62 HOH WAT . C 3 HOH A 62 412 63 HOH WAT . C 3 HOH A 63 413 64 HOH WAT . C 3 HOH A 64 414 65 HOH WAT . C 3 HOH A 65 415 66 HOH WAT . C 3 HOH A 66 416 67 HOH WAT . C 3 HOH A 67 417 68 HOH WAT . C 3 HOH A 68 418 69 HOH WAT . C 3 HOH A 69 419 70 HOH WAT . C 3 HOH A 70 420 71 HOH WAT . C 3 HOH A 71 421 72 HOH WAT . C 3 HOH A 72 422 73 HOH WAT . C 3 HOH A 73 423 74 HOH WAT . C 3 HOH A 74 424 75 HOH WAT . C 3 HOH A 75 425 76 HOH WAT . C 3 HOH A 76 426 77 HOH WAT . C 3 HOH A 77 427 78 HOH WAT . C 3 HOH A 78 428 79 HOH WAT . C 3 HOH A 79 429 80 HOH WAT . C 3 HOH A 80 430 81 HOH WAT . C 3 HOH A 81 431 82 HOH WAT . C 3 HOH A 82 432 83 HOH WAT . C 3 HOH A 83 433 84 HOH WAT . C 3 HOH A 84 434 85 HOH WAT . C 3 HOH A 85 435 87 HOH WAT . C 3 HOH A 86 436 88 HOH WAT . C 3 HOH A 87 437 89 HOH WAT . C 3 HOH A 88 438 90 HOH WAT . C 3 HOH A 89 439 91 HOH WAT . C 3 HOH A 90 440 92 HOH WAT . C 3 HOH A 91 441 93 HOH WAT . C 3 HOH A 92 442 94 HOH WAT . C 3 HOH A 93 443 95 HOH WAT . C 3 HOH A 94 444 96 HOH WAT . C 3 HOH A 95 445 97 HOH WAT . C 3 HOH A 96 446 99 HOH WAT . C 3 HOH A 97 447 100 HOH WAT . C 3 HOH A 98 448 101 HOH WAT . C 3 HOH A 99 449 102 HOH WAT . C 3 HOH A 100 450 103 HOH WAT . C 3 HOH A 101 451 105 HOH WAT . C 3 HOH A 102 452 106 HOH WAT . C 3 HOH A 103 453 107 HOH WAT . C 3 HOH A 104 454 108 HOH WAT . C 3 HOH A 105 455 109 HOH WAT . C 3 HOH A 106 456 110 HOH WAT . C 3 HOH A 107 457 111 HOH WAT . C 3 HOH A 108 458 113 HOH WAT . C 3 HOH A 109 459 114 HOH WAT . C 3 HOH A 110 460 115 HOH WAT . C 3 HOH A 111 461 116 HOH WAT . C 3 HOH A 112 462 117 HOH WAT . C 3 HOH A 113 463 118 HOH WAT . C 3 HOH A 114 464 119 HOH WAT . C 3 HOH A 115 465 121 HOH WAT . C 3 HOH A 116 466 122 HOH WAT . C 3 HOH A 117 467 123 HOH WAT . C 3 HOH A 118 468 124 HOH WAT . C 3 HOH A 119 469 125 HOH WAT . C 3 HOH A 120 470 126 HOH WAT . C 3 HOH A 121 471 127 HOH WAT . C 3 HOH A 122 472 128 HOH WAT . C 3 HOH A 123 473 129 HOH WAT . C 3 HOH A 124 474 131 HOH WAT . C 3 HOH A 125 475 132 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGA . . . B 2 7.845 -1.839 18.418 1 13.67 ? P PGA 350 A 1 HETATM 2 O O1P PGA . . . B 2 7.999 -2.097 16.751 1 14.46 ? O1P PGA 350 A 1 HETATM 3 O O2P PGA . . . B 2 8.84 -0.71 18.69 1 13.3 ? O2P PGA 350 A 1 HETATM 4 O O3P PGA . . . B 2 8.148 -3.166 19.064 1 12.8 ? O3P PGA 350 A 1 HETATM 5 O O4P PGA . . . B 2 6.414 -1.406 18.622 1 14.15 ? O4P PGA 350 A 1 HETATM 6 C C2 PGA . . . B 2 9.329 -2.247 16.145 1 13.4 ? C2 PGA 350 A 1 HETATM 7 C C1 PGA . . . B 2 9.063 -2.34 14.563 1 16.03 ? C1 PGA 350 A 1 HETATM 8 O O1 PGA . . . B 2 9.988 -2.151 13.841 1 17.19 ? O1 PGA 350 A 1 HETATM 9 O O2 PGA . . . B 2 7.884 -2.637 14.269 1 22.68 ? O2 PGA 350 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 493 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #