data_1QFK # _model_server_result.job_id FrpSbaTBy-8VX6Ps_IJqyw _model_server_result.datetime_utc '2024-11-22 01:15:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":153}' # _entry.id 1QFK # _exptl.entry_id 1QFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QFK _cell.length_a 115.3 _cell.length_b 115.3 _cell.length_c 98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG H 460 NAG 3 n C NAG 2 A 2 NAG H 461 NAG 3 n C FUL 3 A 3 FUL H 465 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 L CYS 50 1_555 A SG CYS 13 L CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 7 L CYS 55 1_555 A SG CYS 22 L CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 24 L CYS 72 1_555 A SG CYS 33 L CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 A SG CYS 43 L CYS 91 1_555 A SG CYS 54 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf5 A SG CYS 50 L CYS 98 1_555 A SG CYS 64 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 66 L CYS 114 1_555 A SG CYS 79 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf7 A SG CYS 87 L CYS 135 1_555 B SG CYS 110 H CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 7 H CYS 159 1_555 B SG CYS 12 H CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf9 B SG CYS 26 H CYS 178 1_555 B SG CYS 42 H CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 B SG CYS 158 H CYS 310 1_555 B SG CYS 177 H CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf11 B SG CYS 188 H CYS 340 1_555 B SG CYS 216 H CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? covale ? covale1 A OG SER 4 L SER 52 1_555 D C1 GLC . L GLC 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale2 A OG SER 12 L SER 60 1_555 E C1 FUC . L FUC 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale3 F C3 0Z6 . H 0Z6 1 1_555 B NE2 HIS 41 H HIS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale4 F C2 0Z6 . H 0Z6 1 1_555 B OG SER 192 H SER 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale5 B ND2 ASN 170 H ASN 322 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale6 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale7 C O6 NAG . A NAG 1 1_555 C C1 FUL . A FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? metalc ? metalc1 B OE1 GLU 58 H GLU 210 1_555 G CA CA . H CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc2 B O ASP 60 H ASP 212 1_555 G CA CA . H CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc3 B O GLU 63 H GLU 215 1_555 G CA CA . H CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc4 B OE2 GLU 68 H GLU 220 1_555 G CA CA . H CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc5 G CA CA . H CA 500 1_555 I O HOH . H HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc6 G CA CA . H CA 500 1_555 I O HOH . H HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 201 n n C1 O1 GLC sing 202 n n C1 O5 GLC sing 203 n n C1 H1 GLC sing 204 n n C2 C3 GLC sing 205 n n C2 O2 GLC sing 206 n n C2 H2 GLC sing 207 n n C3 C4 GLC sing 208 n n C3 O3 GLC sing 209 n n C3 H3 GLC sing 210 n n C4 C5 GLC sing 211 n n C4 O4 GLC sing 212 n n C4 H4 GLC sing 213 n n C5 C6 GLC sing 214 n n C5 O5 GLC sing 215 n n C5 H5 GLC sing 216 n n C6 O6 GLC sing 217 n n C6 H61 GLC sing 218 n n C6 H62 GLC sing 219 n n O1 HO1 GLC sing 220 n n O2 HO2 GLC sing 221 n n O3 HO3 GLC sing 222 n n O4 HO4 GLC sing 223 n n O6 HO6 GLC sing 224 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1QFK _atom_sites.fract_transf_matrix[1][1] 0.008673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GLC L 1 153 152 GLC GLC . E 5 FUC L 1 160 160 FUC FUC . F 6 0Z6 H 1 1 1 0Z6 DPN . G 7 CA H 1 500 500 CA CA . H 8 HOH L 1 161 41 HOH HOH . H 8 HOH L 2 162 51 HOH HOH . H 8 HOH L 3 163 54 HOH HOH . H 8 HOH L 4 164 58 HOH HOH . H 8 HOH L 5 165 61 HOH HOH . H 8 HOH L 6 166 64 HOH HOH . H 8 HOH L 7 167 67 HOH HOH . H 8 HOH L 8 168 77 HOH HOH . H 8 HOH L 9 169 80 HOH HOH . H 8 HOH L 10 170 81 HOH HOH . I 8 HOH H 1 28 28 HOH HOH . I 8 HOH H 2 39 39 HOH HOH . I 8 HOH H 3 501 1 HOH HOH . I 8 HOH H 4 502 2 HOH HOH . I 8 HOH H 5 503 3 HOH HOH . I 8 HOH H 6 504 4 HOH HOH . I 8 HOH H 7 505 5 HOH HOH . I 8 HOH H 8 506 6 HOH HOH . I 8 HOH H 9 507 7 HOH HOH . I 8 HOH H 10 508 8 HOH HOH . I 8 HOH H 11 509 9 HOH HOH . I 8 HOH H 12 510 10 HOH HOH . I 8 HOH H 13 511 11 HOH HOH . I 8 HOH H 14 512 12 HOH HOH . I 8 HOH H 15 513 13 HOH HOH . I 8 HOH H 16 514 14 HOH HOH . I 8 HOH H 17 515 15 HOH HOH . I 8 HOH H 18 516 16 HOH HOH . I 8 HOH H 19 517 17 HOH HOH . I 8 HOH H 20 518 18 HOH HOH . I 8 HOH H 21 519 19 HOH HOH . I 8 HOH H 22 520 20 HOH HOH . I 8 HOH H 23 521 21 HOH HOH . I 8 HOH H 24 522 22 HOH HOH . I 8 HOH H 25 523 23 HOH HOH . I 8 HOH H 26 524 24 HOH HOH . I 8 HOH H 27 525 25 HOH HOH . I 8 HOH H 28 526 26 HOH HOH . I 8 HOH H 29 527 27 HOH HOH . I 8 HOH H 30 528 29 HOH HOH . I 8 HOH H 31 529 30 HOH HOH . I 8 HOH H 32 530 31 HOH HOH . I 8 HOH H 33 531 32 HOH HOH . I 8 HOH H 34 532 33 HOH HOH . I 8 HOH H 35 533 34 HOH HOH . I 8 HOH H 36 534 35 HOH HOH . I 8 HOH H 37 535 36 HOH HOH . I 8 HOH H 38 536 37 HOH HOH . I 8 HOH H 39 537 38 HOH HOH . I 8 HOH H 40 538 40 HOH HOH . I 8 HOH H 41 539 42 HOH HOH . I 8 HOH H 42 540 43 HOH HOH . I 8 HOH H 43 541 44 HOH HOH . I 8 HOH H 44 542 45 HOH HOH . I 8 HOH H 45 543 46 HOH HOH . I 8 HOH H 46 544 47 HOH HOH . I 8 HOH H 47 545 48 HOH HOH . I 8 HOH H 48 546 49 HOH HOH . I 8 HOH H 49 547 50 HOH HOH . I 8 HOH H 50 548 52 HOH HOH . I 8 HOH H 51 549 53 HOH HOH . I 8 HOH H 52 550 55 HOH HOH . I 8 HOH H 53 551 56 HOH HOH . I 8 HOH H 54 552 57 HOH HOH . I 8 HOH H 55 553 59 HOH HOH . I 8 HOH H 56 554 60 HOH HOH . I 8 HOH H 57 555 62 HOH HOH . I 8 HOH H 58 556 63 HOH HOH . I 8 HOH H 59 557 65 HOH HOH . I 8 HOH H 60 558 66 HOH HOH . I 8 HOH H 61 559 68 HOH HOH . I 8 HOH H 62 560 69 HOH HOH . I 8 HOH H 63 561 70 HOH HOH . I 8 HOH H 64 562 71 HOH HOH . I 8 HOH H 65 563 72 HOH HOH . I 8 HOH H 66 564 73 HOH HOH . I 8 HOH H 67 565 74 HOH HOH . I 8 HOH H 68 566 75 HOH HOH . I 8 HOH H 69 567 76 HOH HOH . I 8 HOH H 70 568 78 HOH HOH . I 8 HOH H 71 569 79 HOH HOH . I 8 HOH H 72 570 82 HOH HOH . I 8 HOH H 73 571 83 HOH HOH . I 8 HOH H 74 572 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . D 4 164.824 80.388 1.931 1 97.21 ? C1 GLC 153 L 1 HETATM 2 C C2 GLC . . . D 4 164.132 80.42 3.261 1 97.42 ? C2 GLC 153 L 1 HETATM 3 C C3 GLC . . . D 4 163.524 81.794 3.493 1 97.09 ? C3 GLC 153 L 1 HETATM 4 C C4 GLC . . . D 4 164.526 82.794 2.907 1 96.82 ? C4 GLC 153 L 1 HETATM 5 C C5 GLC . . . D 4 164.467 82.683 1.393 1 97.35 ? C5 GLC 153 L 1 HETATM 6 C C6 GLC . . . D 4 165.649 83.227 0.66 1 96.6 ? C6 GLC 153 L 1 HETATM 7 O O2 GLC . . . D 4 163.278 79.336 3.532 1 97.21 ? O2 GLC 153 L 1 HETATM 8 O O3 GLC . . . D 4 163.371 82.053 4.885 1 97.06 ? O3 GLC 153 L 1 HETATM 9 O O4 GLC . . . D 4 164.25 84.091 3.346 1 96.62 ? O4 GLC 153 L 1 HETATM 10 O O5 GLC . . . D 4 164.24 81.315 1.005 1 97.49 ? O5 GLC 153 L 1 HETATM 11 O O6 GLC . . . D 4 165.48 84.631 0.396 1 96.13 ? O6 GLC 153 L 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #