data_1QFU
#
_model_server_result.job_id            ax89ka3NJYncdZke90x9EA 
_model_server_result.datetime_utc      '2025-02-26 19:59:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qfu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":410}' 
#
_entry.id    1QFU 
#
_exptl.entry_id    1QFU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          7 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1QFU 
_cell.length_a            138 
_cell.length_b            138 
_cell.length_c            135 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QFU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 69 119.511506 0 
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -69 119.511506 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
5 oligosaccharide 
6 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 5 2 1 NDG NAG C1 O1 . O4 HO4 . sing 
2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
5 n E NAG 1 C 1 NAG A 440 NAG 
5 n E NDG 2 C 2 NDG A 441 NAG 
6 n F NAG 1 D 1 NAG A 450 NAG 
6 n F NAG 2 D 2 NAG A 451 NAG 
6 n F BMA 3 D 3 BMA A 452 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf2 A SG CYS 52 A CYS 52 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf8 C SG CYS 139 L CYS 133 1_555 C SG CYS 199 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf9 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
disulf ? disulf10 D SG CYS 149 H CYS 140 1_555 D SG CYS 204 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
covale ? covale1 A ND2 ASN 38 A ASN 38 1_555 G C1 NAG . A NAG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? 
covale ? covale2 A ND2 ASN 81 A ASN 81 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale4 A ND2 ASN 285 A ASN 285 1_555 H C1 NAG . A NAG 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale5 B ND2 ASN 154 B ASN 154 1_555 I C1 NAG . B NAG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale6 E O4 NAG . C NAG 1 1_555 E C1 NDG . C NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? 
covale ? covale7 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale8 F O4 NAG . D NAG 2 1_555 F C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 261 n n 
C1 O1 NAG sing 262 n n 
C1 O5 NAG sing 263 n n 
C1 H1 NAG sing 264 n n 
C2 C3 NAG sing 265 n n 
C2 N2 NAG sing 266 n n 
C2 H2 NAG sing 267 n n 
C3 C4 NAG sing 268 n n 
C3 O3 NAG sing 269 n n 
C3 H3 NAG sing 270 n n 
C4 C5 NAG sing 271 n n 
C4 O4 NAG sing 272 n n 
C4 H4 NAG sing 273 n n 
C5 C6 NAG sing 274 n n 
C5 O5 NAG sing 275 n n 
C5 H5 NAG sing 276 n n 
C6 O6 NAG sing 277 n n 
C6 H61 NAG sing 278 n n 
C6 H62 NAG sing 279 n n 
C7 C8 NAG sing 280 n n 
C7 N2 NAG sing 281 n n 
C7 O7 NAG doub 282 n n 
C8 H81 NAG sing 283 n n 
C8 H82 NAG sing 284 n n 
C8 H83 NAG sing 285 n n 
N2 HN2 NAG sing 286 n n 
O1 HO1 NAG sing 287 n n 
O3 HO3 NAG sing 288 n n 
O4 HO4 NAG sing 289 n n 
O6 HO6 NAG sing 290 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1QFU 
_atom_sites.fract_transf_matrix[1][1]    0.007246 
_atom_sites.fract_transf_matrix[1][2]    0.004184 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008367 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007407 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 NAG A 1 430 430 NAG NAG . 
H 7 NAG A 1 460 460 NAG NAG . 
I 7 NAG B 1 410 410 NAG NAG . 
J 8 HOH A 1 461 1 HOH HOH . 
J 8 HOH A 2 462 2 HOH HOH . 
J 8 HOH A 3 463 10 HOH HOH . 
J 8 HOH A 4 464 14 HOH HOH . 
J 8 HOH A 5 465 16 HOH HOH . 
J 8 HOH A 6 466 20 HOH HOH . 
J 8 HOH A 7 467 21 HOH HOH . 
J 8 HOH A 8 468 23 HOH HOH . 
J 8 HOH A 9 469 25 HOH HOH . 
J 8 HOH A 10 470 26 HOH HOH . 
J 8 HOH A 11 471 29 HOH HOH . 
J 8 HOH A 12 472 30 HOH HOH . 
J 8 HOH A 13 473 32 HOH HOH . 
J 8 HOH A 14 474 37 HOH HOH . 
J 8 HOH A 15 475 40 HOH HOH . 
J 8 HOH A 16 476 41 HOH HOH . 
J 8 HOH A 17 477 42 HOH HOH . 
J 8 HOH A 18 478 44 HOH HOH . 
J 8 HOH A 19 479 47 HOH HOH . 
J 8 HOH A 20 480 49 HOH HOH . 
J 8 HOH A 21 481 53 HOH HOH . 
J 8 HOH A 22 482 55 HOH HOH . 
J 8 HOH A 23 483 56 HOH HOH . 
J 8 HOH A 24 484 60 HOH HOH . 
J 8 HOH A 25 485 68 HOH HOH . 
J 8 HOH A 26 486 69 HOH HOH . 
J 8 HOH A 27 487 77 HOH HOH . 
J 8 HOH A 28 488 78 HOH HOH . 
K 8 HOH B 1 411 3 HOH HOH . 
K 8 HOH B 2 412 4 HOH HOH . 
K 8 HOH B 3 413 5 HOH HOH . 
K 8 HOH B 4 414 6 HOH HOH . 
K 8 HOH B 5 415 7 HOH HOH . 
K 8 HOH B 6 416 8 HOH HOH . 
K 8 HOH B 7 417 11 HOH HOH . 
K 8 HOH B 8 418 12 HOH HOH . 
K 8 HOH B 9 419 13 HOH HOH . 
K 8 HOH B 10 420 15 HOH HOH . 
K 8 HOH B 11 421 18 HOH HOH . 
K 8 HOH B 12 422 27 HOH HOH . 
K 8 HOH B 13 423 35 HOH HOH . 
K 8 HOH B 14 424 38 HOH HOH . 
K 8 HOH B 15 425 45 HOH HOH . 
K 8 HOH B 16 426 46 HOH HOH . 
K 8 HOH B 17 427 50 HOH HOH . 
K 8 HOH B 18 428 52 HOH HOH . 
K 8 HOH B 19 429 54 HOH HOH . 
K 8 HOH B 20 430 57 HOH HOH . 
K 8 HOH B 21 431 58 HOH HOH . 
K 8 HOH B 22 432 59 HOH HOH . 
K 8 HOH B 23 433 61 HOH HOH . 
K 8 HOH B 24 434 66 HOH HOH . 
K 8 HOH B 25 435 67 HOH HOH . 
K 8 HOH B 26 436 73 HOH HOH . 
K 8 HOH B 27 437 75 HOH HOH . 
K 8 HOH B 28 438 76 HOH HOH . 
K 8 HOH B 29 439 79 HOH HOH . 
K 8 HOH B 30 440 82 HOH HOH . 
L 8 HOH L 1 212 19 HOH HOH . 
L 8 HOH L 2 213 33 HOH HOH . 
L 8 HOH L 3 214 36 HOH HOH . 
M 8 HOH H 1 215 9 HOH HOH . 
M 8 HOH H 2 216 17 HOH HOH . 
M 8 HOH H 3 217 22 HOH HOH . 
M 8 HOH H 4 218 24 HOH HOH . 
M 8 HOH H 5 219 28 HOH HOH . 
M 8 HOH H 6 220 34 HOH HOH . 
M 8 HOH H 7 221 71 HOH HOH . 
M 8 HOH H 8 222 72 HOH HOH . 
M 8 HOH H 9 223 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 7 24.632 83.564 113.319 1 86.99 ? C1 NAG 410 B 1 
HETATM 2 C C2 NAG . . . I 7 26.034 83.111 112.769 1 90.79 ? C2 NAG 410 B 1 
HETATM 3 C C3 NAG . . . I 7 26.754 82.571 113.997 1 91.99 ? C3 NAG 410 B 1 
HETATM 4 C C4 NAG . . . I 7 27.056 83.762 114.941 1 91.91 ? C4 NAG 410 B 1 
HETATM 5 C C5 NAG . . . I 7 25.677 84.358 115.464 1 88.24 ? C5 NAG 410 B 1 
HETATM 6 C C6 NAG . . . I 7 25.778 85.78 116.131 1 86.69 ? C6 NAG 410 B 1 
HETATM 7 C C7 NAG . . . I 7 26.281 82.439 110.399 1 98.35 ? C7 NAG 410 B 1 
HETATM 8 C C8 NAG . . . I 7 26.176 81.297 109.396 1 100.24 ? C8 NAG 410 B 1 
HETATM 9 N N2 NAG . . . I 7 25.996 82.142 111.665 1 94.88 ? N2 NAG 410 B 1 
HETATM 10 O O3 NAG . . . I 7 27.937 81.893 113.649 1 93.12 ? O3 NAG 410 B 1 
HETATM 11 O O4 NAG . . . I 7 27.904 83.286 115.985 1 94.29 ? O4 NAG 410 B 1 
HETATM 12 O O5 NAG . . . I 7 24.724 84.534 114.386 1 88.42 ? O5 NAG 410 B 1 
HETATM 13 O O6 NAG . . . I 7 26.454 86.821 115.41 1 83.03 ? O6 NAG 410 B 1 
HETATM 14 O O7 NAG . . . I 7 26.614 83.566 110.035 1 100.81 ? O7 NAG 410 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#