data_1QGF # _model_server_result.job_id OD68MF1LIxRF0RsnFyz8Fw _model_server_result.datetime_utc '2024-11-22 13:15:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qgf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":280}' # _entry.id 1QGF # _exptl.entry_id 1QGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.369 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3S)-3-FORMYL-2-({[(4-METHYLPHENYL)SULFONYL]AMINO}METHYL)PENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QGF _cell.length_a 50.22 _cell.length_b 57.63 _cell.length_c 74.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 42 1_555 A SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 174 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 214 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A OG SER 188 A SER 195 1_555 D C TPX . A TPX 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.204 ? metalc ? metalc1 A OE1 GLU 59 A GLU 70 1_555 B CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc2 A OE2 GLU 59 A GLU 70 1_555 B CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc3 A O ASN 61 A ASN 72 1_555 B CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A O GLN 64 A GLN 75 1_555 B CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 A OD1 ASN 66 A ASN 77 1_555 B CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 A OE2 GLU 69 A GLU 80 1_555 B CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc7 B CA CA . A CA 260 1_555 E O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? # _chem_comp.formula 'C14 H19 N O5 S' _chem_comp.formula_weight 313.369 _chem_comp.id TPX _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3S)-3-FORMYL-2-({[(4-METHYLPHENYL)SULFONYL]AMINO}METHYL)PENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA TPX sing 310 n n C O TPX doub 311 n n C H TPX sing 312 n n CA CB TPX sing 313 n n CA CD TPX sing 314 n n CA HA TPX sing 315 n n CB CC TPX sing 316 n n CB CK TPX sing 317 n n CB HB TPX sing 318 n n CC OA TPX sing 319 n n CC OB TPX doub 320 n n CD CE TPX sing 321 n n CD HD2 TPX sing 322 n n CD HD1 TPX sing 323 n n CE HE3 TPX sing 324 n n CE HE2 TPX sing 325 n n CE HE1 TPX sing 326 n n OA HOA TPX sing 327 n n CK N TPX sing 328 n n CK HK2 TPX sing 329 n n CK HK1 TPX sing 330 n n N S TPX sing 331 n n N HN1 TPX sing 332 n n OC S TPX doub 333 n n OD S TPX doub 334 n n S CF TPX sing 335 n n CF CG1 TPX doub 336 n y CF CG2 TPX sing 337 n y CG1 CH1 TPX sing 338 n y CG1 HG1 TPX sing 339 n n CG2 CH2 TPX doub 340 n y CG2 HG2 TPX sing 341 n n CH1 CI TPX doub 342 n y CH1 HH1 TPX sing 343 n n CH2 CI TPX sing 344 n y CH2 HH2 TPX sing 345 n n CI CJ TPX sing 346 n n CJ HJ3 TPX sing 347 n n CJ HJ2 TPX sing 348 n n CJ HJ1 TPX sing 349 n n # _atom_sites.entry_id 1QGF _atom_sites.fract_transf_matrix[1][1] 0.019912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 260 260 CA CA . C 3 SO4 A 1 270 270 SO4 SO4 . D 4 TPX A 1 280 280 TPX TPX . E 5 HOH A 1 300 300 HOH HOH . E 5 HOH A 2 301 301 HOH HOH . E 5 HOH A 3 302 302 HOH HOH . E 5 HOH A 4 303 303 HOH HOH . E 5 HOH A 5 304 304 HOH HOH . E 5 HOH A 6 305 305 HOH HOH . E 5 HOH A 7 306 306 HOH HOH . E 5 HOH A 8 307 307 HOH HOH . E 5 HOH A 9 308 308 HOH HOH . E 5 HOH A 10 309 309 HOH HOH . E 5 HOH A 11 310 310 HOH HOH . E 5 HOH A 12 311 311 HOH HOH . E 5 HOH A 13 312 312 HOH HOH . E 5 HOH A 14 313 313 HOH HOH . E 5 HOH A 15 314 314 HOH HOH . E 5 HOH A 16 315 315 HOH HOH . E 5 HOH A 17 316 316 HOH HOH . E 5 HOH A 18 317 317 HOH HOH . E 5 HOH A 19 318 318 HOH HOH . E 5 HOH A 20 319 319 HOH HOH . E 5 HOH A 21 320 320 HOH HOH . E 5 HOH A 22 321 321 HOH HOH . E 5 HOH A 23 322 322 HOH HOH . E 5 HOH A 24 323 323 HOH HOH . E 5 HOH A 25 324 324 HOH HOH . E 5 HOH A 26 325 325 HOH HOH . E 5 HOH A 27 326 326 HOH HOH . E 5 HOH A 28 327 327 HOH HOH . E 5 HOH A 29 328 328 HOH HOH . E 5 HOH A 30 329 329 HOH HOH . E 5 HOH A 31 330 330 HOH HOH . E 5 HOH A 32 331 331 HOH HOH . E 5 HOH A 33 332 332 HOH HOH . E 5 HOH A 34 333 333 HOH HOH . E 5 HOH A 35 334 334 HOH HOH . E 5 HOH A 36 335 335 HOH HOH . E 5 HOH A 37 336 336 HOH HOH . E 5 HOH A 38 337 337 HOH HOH . E 5 HOH A 39 338 338 HOH HOH . E 5 HOH A 40 339 339 HOH HOH . E 5 HOH A 41 340 340 HOH HOH . E 5 HOH A 42 341 341 HOH HOH . E 5 HOH A 43 342 342 HOH HOH . E 5 HOH A 44 343 343 HOH HOH . E 5 HOH A 45 344 344 HOH HOH . E 5 HOH A 46 345 345 HOH HOH . E 5 HOH A 47 346 346 HOH HOH . E 5 HOH A 48 347 347 HOH HOH . E 5 HOH A 49 348 348 HOH HOH . E 5 HOH A 50 349 349 HOH HOH . E 5 HOH A 51 350 350 HOH HOH . E 5 HOH A 52 351 351 HOH HOH . E 5 HOH A 53 352 352 HOH HOH . E 5 HOH A 54 353 353 HOH HOH . E 5 HOH A 55 354 354 HOH HOH . E 5 HOH A 56 355 355 HOH HOH . E 5 HOH A 57 356 356 HOH HOH . E 5 HOH A 58 357 357 HOH HOH . E 5 HOH A 59 358 358 HOH HOH . E 5 HOH A 60 359 359 HOH HOH . E 5 HOH A 61 360 360 HOH HOH . E 5 HOH A 62 361 361 HOH HOH . E 5 HOH A 63 362 362 HOH HOH . E 5 HOH A 64 363 363 HOH HOH . E 5 HOH A 65 364 364 HOH HOH . E 5 HOH A 66 365 365 HOH HOH . E 5 HOH A 67 366 366 HOH HOH . E 5 HOH A 68 367 367 HOH HOH . E 5 HOH A 69 368 368 HOH HOH . E 5 HOH A 70 369 369 HOH HOH . E 5 HOH A 71 370 370 HOH HOH . E 5 HOH A 72 371 371 HOH HOH . E 5 HOH A 73 372 372 HOH HOH . E 5 HOH A 74 373 373 HOH HOH . E 5 HOH A 75 374 374 HOH HOH . E 5 HOH A 76 375 375 HOH HOH . E 5 HOH A 77 376 376 HOH HOH . E 5 HOH A 78 377 377 HOH HOH . E 5 HOH A 79 378 378 HOH HOH . E 5 HOH A 80 379 379 HOH HOH . E 5 HOH A 81 380 380 HOH HOH . E 5 HOH A 82 381 381 HOH HOH . E 5 HOH A 83 382 382 HOH HOH . E 5 HOH A 84 383 383 HOH HOH . E 5 HOH A 85 384 384 HOH HOH . E 5 HOH A 86 385 385 HOH HOH . E 5 HOH A 87 386 386 HOH HOH . E 5 HOH A 88 387 387 HOH HOH . E 5 HOH A 89 388 388 HOH HOH . E 5 HOH A 90 389 389 HOH HOH . E 5 HOH A 91 390 390 HOH HOH . E 5 HOH A 92 391 391 HOH HOH . E 5 HOH A 93 392 392 HOH HOH . E 5 HOH A 94 393 393 HOH HOH . E 5 HOH A 95 394 394 HOH HOH . E 5 HOH A 96 395 395 HOH HOH . E 5 HOH A 97 396 396 HOH HOH . E 5 HOH A 98 397 397 HOH HOH . E 5 HOH A 99 398 398 HOH HOH . E 5 HOH A 100 399 399 HOH HOH . E 5 HOH A 101 400 400 HOH HOH . E 5 HOH A 102 401 401 HOH HOH . E 5 HOH A 103 402 402 HOH HOH . E 5 HOH A 104 403 403 HOH HOH . E 5 HOH A 105 404 404 HOH HOH . E 5 HOH A 106 405 405 HOH HOH . E 5 HOH A 107 406 406 HOH HOH . E 5 HOH A 108 407 407 HOH HOH . E 5 HOH A 109 408 408 HOH HOH . E 5 HOH A 110 409 409 HOH HOH . E 5 HOH A 111 410 410 HOH HOH . E 5 HOH A 112 411 411 HOH HOH . E 5 HOH A 113 412 412 HOH HOH . E 5 HOH A 114 413 413 HOH HOH . E 5 HOH A 115 414 414 HOH HOH . E 5 HOH A 116 415 415 HOH HOH . E 5 HOH A 117 416 416 HOH HOH . E 5 HOH A 118 417 417 HOH HOH . E 5 HOH A 119 418 418 HOH HOH . E 5 HOH A 120 419 419 HOH HOH . E 5 HOH A 121 420 420 HOH HOH . E 5 HOH A 122 421 421 HOH HOH . E 5 HOH A 123 422 422 HOH HOH . E 5 HOH A 124 423 423 HOH HOH . E 5 HOH A 125 424 424 HOH HOH . E 5 HOH A 126 425 425 HOH HOH . E 5 HOH A 127 426 426 HOH HOH . E 5 HOH A 128 427 427 HOH HOH . E 5 HOH A 129 428 428 HOH HOH . E 5 HOH A 130 429 429 HOH HOH . E 5 HOH A 131 430 430 HOH HOH . E 5 HOH A 132 431 431 HOH HOH . E 5 HOH A 133 432 432 HOH HOH . E 5 HOH A 134 433 433 HOH HOH . E 5 HOH A 135 434 434 HOH HOH . E 5 HOH A 136 435 435 HOH HOH . E 5 HOH A 137 436 436 HOH HOH . E 5 HOH A 138 437 437 HOH HOH . E 5 HOH A 139 438 438 HOH HOH . E 5 HOH A 140 439 439 HOH HOH . E 5 HOH A 141 440 440 HOH HOH . E 5 HOH A 142 441 441 HOH HOH . E 5 HOH A 143 442 442 HOH HOH . E 5 HOH A 144 443 443 HOH HOH . E 5 HOH A 145 444 444 HOH HOH . E 5 HOH A 146 445 445 HOH HOH . E 5 HOH A 147 446 446 HOH HOH . E 5 HOH A 148 447 447 HOH HOH . E 5 HOH A 149 448 448 HOH HOH . E 5 HOH A 150 449 449 HOH HOH . E 5 HOH A 151 450 450 HOH HOH . E 5 HOH A 152 451 451 HOH HOH . E 5 HOH A 153 452 452 HOH HOH . E 5 HOH A 154 453 453 HOH HOH . E 5 HOH A 155 454 454 HOH HOH . E 5 HOH A 156 455 455 HOH HOH . E 5 HOH A 157 456 456 HOH HOH . E 5 HOH A 158 457 457 HOH HOH . E 5 HOH A 159 458 458 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TPX . . . D 4 -8.799 23.72 37.787 1 14.99 ? C TPX 280 A 1 HETATM 2 C CA TPX . . . D 4 -10.19 23.106 37.899 1 11.25 ? CA TPX 280 A 1 HETATM 3 C CB TPX . . . D 4 -10.353 21.98 36.943 1 13.56 ? CB TPX 280 A 1 HETATM 4 C CC TPX . . . D 4 -11.757 21.434 36.997 1 14.21 ? CC TPX 280 A 1 HETATM 5 C CD TPX . . . D 4 -11.201 24.18 37.674 1 10.69 ? CD TPX 280 A 1 HETATM 6 C CE TPX . . . D 4 -10.947 25.442 38.485 1 12.89 ? CE TPX 280 A 1 HETATM 7 O O TPX . . . D 4 -8.476 24.479 36.916 1 17.25 ? O TPX 280 A 1 HETATM 8 O OA TPX . . . D 4 -12.326 21.095 35.911 1 13.62 ? OA TPX 280 A 1 HETATM 9 O OB TPX . . . D 4 -12.351 21.315 38.091 1 16.18 ? OB TPX 280 A 1 HETATM 10 C CK TPX . . . D 4 -9.368 20.896 37.112 1 19.56 ? CK TPX 280 A 1 HETATM 11 N N TPX . . . D 4 -7.966 21.033 36.829 1 24.51 ? N TPX 280 A 1 HETATM 12 O OC TPX . . . D 4 -8.437 22.244 34.308 1 41.61 ? OC TPX 280 A 1 HETATM 13 O OD TPX . . . D 4 -6.289 21.96 35.459 1 25.44 ? OD TPX 280 A 1 HETATM 14 S S TPX . . . D 4 -7.626 21.463 35.246 1 26.14 ? S TPX 280 A 1 HETATM 15 C CF TPX . . . D 4 -7.449 19.885 34.425 0.5 12.08 ? CF TPX 280 A 1 HETATM 16 C CG1 TPX . . . D 4 -6.215 19.265 34.445 0 12.15 ? CG1 TPX 280 A 1 HETATM 17 C CG2 TPX . . . D 4 -8.551 19.343 33.799 0 12.15 ? CG2 TPX 280 A 1 HETATM 18 C CH1 TPX . . . D 4 -6.091 18.047 33.809 0 12.16 ? CH1 TPX 280 A 1 HETATM 19 C CH2 TPX . . . D 4 -8.41 18.126 33.167 0 12.16 ? CH2 TPX 280 A 1 HETATM 20 C CI TPX . . . D 4 -7.184 17.485 33.175 0 12.16 ? CI TPX 280 A 1 HETATM 21 C CJ TPX . . . D 4 -7.038 16.156 32.482 0 12.14 ? CJ TPX 280 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #