data_1QGL # _model_server_result.job_id 89dNd_bNRFxCrpsvu4oUbA _model_server_result.datetime_utc '2025-03-05 04:14:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":239}' # _entry.id 1QGL # _exptl.entry_id 1QGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QGL _cell.length_a 99.1 _cell.length_b 127.4 _cell.length_c 118.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 101 B LYS 101 1_555 H C1 SIN . B SIN 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 C MN MN . A MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 C MN MN . A MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 D CA CA . A CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc4 A OD1 ASP 10 A ASP 10 1_555 D CA CA . A CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 D CA CA . A CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 D CA CA . A CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 C MN MN . A MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 D CA CA . A CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 C MN MN . A MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc10 C MN MN . A MN 239 1_555 I O HOH . A HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc11 C MN MN . A MN 239 1_555 I O HOH . A HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc12 D CA CA . A CA 240 1_555 I O HOH . A HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc13 D CA CA . A CA 240 1_555 I O HOH . A HOH 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc14 B OE2 GLU 8 B GLU 8 1_555 F MN MN . B MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc15 B OD2 ASP 10 B ASP 10 1_555 F MN MN . B MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc16 B OD2 ASP 10 B ASP 10 1_555 G CA CA . B CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc17 B OD1 ASP 10 B ASP 10 1_555 G CA CA . B CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc18 B O TYR 12 B TYR 12 1_555 G CA CA . B CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc19 B OD1 ASN 14 B ASN 14 1_555 G CA CA . B CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc20 B OD1 ASP 19 B ASP 19 1_555 F MN MN . B MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc21 B OD2 ASP 19 B ASP 19 1_555 G CA CA . B CA 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc22 B NE2 HIS 24 B HIS 24 1_555 F MN MN . B MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc23 F MN MN . B MN 239 1_555 J O HOH . B HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc24 F MN MN . B MN 239 1_555 J O HOH . B HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc25 G CA CA . B CA 240 1_555 J O HOH . B HOH 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc26 G CA CA . B CA 240 1_555 J O HOH . B HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1QGL _atom_sites.fract_transf_matrix[1][1] 0.010091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 239 239 MN MN . D 3 CA A 1 240 240 CA CA . E 4 EJT A 1 238 238 EJT EJT . F 2 MN B 1 239 239 MN MN . G 3 CA B 1 240 240 CA CA . H 5 SIN B 1 241 241 SIN SUC . I 6 HOH A 1 241 1 HOH HOH . I 6 HOH A 2 242 2 HOH HOH . I 6 HOH A 3 243 3 HOH HOH . I 6 HOH A 4 244 4 HOH HOH . I 6 HOH A 5 245 5 HOH HOH . I 6 HOH A 6 246 6 HOH HOH . I 6 HOH A 7 247 7 HOH HOH . I 6 HOH A 8 248 8 HOH HOH . I 6 HOH A 9 249 9 HOH HOH . I 6 HOH A 10 250 10 HOH HOH . I 6 HOH A 11 251 11 HOH HOH . I 6 HOH A 12 252 12 HOH HOH . I 6 HOH A 13 253 13 HOH HOH . I 6 HOH A 14 254 14 HOH HOH . I 6 HOH A 15 255 15 HOH HOH . I 6 HOH A 16 256 16 HOH HOH . I 6 HOH A 17 257 17 HOH HOH . I 6 HOH A 18 258 18 HOH HOH . I 6 HOH A 19 259 19 HOH HOH . I 6 HOH A 20 260 20 HOH HOH . I 6 HOH A 21 261 21 HOH HOH . I 6 HOH A 22 262 22 HOH HOH . I 6 HOH A 23 263 23 HOH HOH . I 6 HOH A 24 264 24 HOH HOH . I 6 HOH A 25 265 25 HOH HOH . I 6 HOH A 26 266 26 HOH HOH . I 6 HOH A 27 267 27 HOH HOH . I 6 HOH A 28 268 28 HOH HOH . I 6 HOH A 29 269 29 HOH HOH . I 6 HOH A 30 270 30 HOH HOH . I 6 HOH A 31 271 31 HOH HOH . I 6 HOH A 32 272 61 HOH HOH . I 6 HOH A 33 273 67 HOH HOH . I 6 HOH A 34 274 69 HOH HOH . I 6 HOH A 35 275 71 HOH HOH . I 6 HOH A 36 276 73 HOH HOH . I 6 HOH A 37 277 75 HOH HOH . I 6 HOH A 38 278 76 HOH HOH . I 6 HOH A 39 279 79 HOH HOH . I 6 HOH A 40 280 82 HOH HOH . J 6 HOH B 1 242 32 HOH HOH . J 6 HOH B 2 243 33 HOH HOH . J 6 HOH B 3 244 34 HOH HOH . J 6 HOH B 4 245 35 HOH HOH . J 6 HOH B 5 246 36 HOH HOH . J 6 HOH B 6 247 37 HOH HOH . J 6 HOH B 7 248 38 HOH HOH . J 6 HOH B 8 249 39 HOH HOH . J 6 HOH B 9 250 40 HOH HOH . J 6 HOH B 10 251 41 HOH HOH . J 6 HOH B 11 252 42 HOH HOH . J 6 HOH B 12 253 43 HOH HOH . J 6 HOH B 13 254 44 HOH HOH . J 6 HOH B 14 255 45 HOH HOH . J 6 HOH B 15 256 46 HOH HOH . J 6 HOH B 16 257 47 HOH HOH . J 6 HOH B 17 258 49 HOH HOH . J 6 HOH B 18 259 50 HOH HOH . J 6 HOH B 19 260 52 HOH HOH . J 6 HOH B 20 261 53 HOH HOH . J 6 HOH B 21 262 54 HOH HOH . J 6 HOH B 22 263 55 HOH HOH . J 6 HOH B 23 264 56 HOH HOH . J 6 HOH B 24 265 57 HOH HOH . J 6 HOH B 25 266 58 HOH HOH . J 6 HOH B 26 267 59 HOH HOH . J 6 HOH B 27 268 60 HOH HOH . J 6 HOH B 28 269 63 HOH HOH . J 6 HOH B 29 270 74 HOH HOH . J 6 HOH B 30 271 77 HOH HOH . J 6 HOH B 31 272 78 HOH HOH . J 6 HOH B 32 273 80 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.021 _atom_site.Cartn_y 57.504 _atom_site.Cartn_z 51.07 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 239 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #