data_1QHJ # _model_server_result.job_id BZmEP5WZ9GlltgU_7ywLIw _model_server_result.datetime_utc '2024-12-16 16:37:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qhj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":507}' # _entry.id 1QHJ # _exptl.entry_id 1QHJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 637.158 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXADECAN-16-OXY]-PROPANE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QHJ _cell.length_a 60.8 _cell.length_b 60.8 _cell.length_c 110.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.4 52.654345 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.4 52.654345 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.308 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C43 H88 O2' _chem_comp.formula_weight 637.158 _chem_comp.id PH1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXADECAN-16-OXY]-PROPANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHYTANYL MOIETY' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PH1 sing 203 n n O1 C51 PH1 sing 204 n n C1 C2 PH1 sing 205 n n C1 H11 PH1 sing 206 n n C1 H12 PH1 sing 207 n n C2 C3 PH1 sing 208 n n C2 H21 PH1 sing 209 n n C2 H22 PH1 sing 210 n n C3 C4 PH1 sing 211 n n C3 C5 PH1 sing 212 n n C3 H3 PH1 sing 213 n n C4 H41 PH1 sing 214 n n C4 H42 PH1 sing 215 n n C4 H43A PH1 sing 216 n n C5 C6 PH1 sing 217 n n C5 H51 PH1 sing 218 n n C5 H52A PH1 sing 219 n n C6 C7 PH1 sing 220 n n C6 H61 PH1 sing 221 n n C6 H62 PH1 sing 222 n n C7 C8 PH1 sing 223 n n C7 H71 PH1 sing 224 n n C7 H72 PH1 sing 225 n n C8 C9 PH1 sing 226 n n C8 C10 PH1 sing 227 n n C8 H8 PH1 sing 228 n n C9 H91 PH1 sing 229 n n C9 H92 PH1 sing 230 n n C9 H93 PH1 sing 231 n n C10 C11 PH1 sing 232 n n C10 H101 PH1 sing 233 n n C10 H102 PH1 sing 234 n n C11 C12 PH1 sing 235 n n C11 H111 PH1 sing 236 n n C11 H112 PH1 sing 237 n n C12 C13 PH1 sing 238 n n C12 H121 PH1 sing 239 n n C12 H122 PH1 sing 240 n n C13 C14 PH1 sing 241 n n C13 C15 PH1 sing 242 n n C13 H13 PH1 sing 243 n n C14 H141 PH1 sing 244 n n C14 H142 PH1 sing 245 n n C14 H143 PH1 sing 246 n n C15 C16 PH1 sing 247 n n C15 H151 PH1 sing 248 n n C15 H152 PH1 sing 249 n n C16 C17 PH1 sing 250 n n C16 H161 PH1 sing 251 n n C16 H162 PH1 sing 252 n n C17 C18 PH1 sing 253 n n C17 H171 PH1 sing 254 n n C17 H172 PH1 sing 255 n n C18 C19 PH1 sing 256 n n C18 C20 PH1 sing 257 n n C18 H18 PH1 sing 258 n n C19 H191 PH1 sing 259 n n C19 H192 PH1 sing 260 n n C19 H193 PH1 sing 261 n n C20 H201 PH1 sing 262 n n C20 H202 PH1 sing 263 n n C20 H203 PH1 sing 264 n n O31 C31 PH1 sing 265 n n O31 C52 PH1 sing 266 n n C31 C32 PH1 sing 267 n n C31 H311 PH1 sing 268 n n C31 H312 PH1 sing 269 n n C32 C33 PH1 sing 270 n n C32 H321 PH1 sing 271 n n C32 H322 PH1 sing 272 n n C33 C34 PH1 sing 273 n n C33 C35 PH1 sing 274 n n C33 H33 PH1 sing 275 n n C34 H341 PH1 sing 276 n n C34 H342 PH1 sing 277 n n C34 H343 PH1 sing 278 n n C35 C36 PH1 sing 279 n n C35 H351 PH1 sing 280 n n C35 H352 PH1 sing 281 n n C36 C37 PH1 sing 282 n n C36 H361 PH1 sing 283 n n C36 H362 PH1 sing 284 n n C37 C38 PH1 sing 285 n n C37 H371 PH1 sing 286 n n C37 H372 PH1 sing 287 n n C38 C39 PH1 sing 288 n n C38 C40 PH1 sing 289 n n C38 H38 PH1 sing 290 n n C39 H391 PH1 sing 291 n n C39 H392 PH1 sing 292 n n C39 H393 PH1 sing 293 n n C40 C41 PH1 sing 294 n n C40 H401 PH1 sing 295 n n C40 H402 PH1 sing 296 n n C41 C42 PH1 sing 297 n n C41 H411 PH1 sing 298 n n C41 H412 PH1 sing 299 n n C42 C43 PH1 sing 300 n n C42 H421 PH1 sing 301 n n C42 H422 PH1 sing 302 n n C43 C44 PH1 sing 303 n n C43 C45 PH1 sing 304 n n C43 H43 PH1 sing 305 n n C44 H441 PH1 sing 306 n n C44 H442 PH1 sing 307 n n C44 H443 PH1 sing 308 n n C45 C46 PH1 sing 309 n n C45 H451 PH1 sing 310 n n C45 H452 PH1 sing 311 n n C46 C47 PH1 sing 312 n n C46 H461 PH1 sing 313 n n C46 H462 PH1 sing 314 n n C47 C48 PH1 sing 315 n n C47 H471 PH1 sing 316 n n C47 H472 PH1 sing 317 n n C48 C49 PH1 sing 318 n n C48 C50 PH1 sing 319 n n C48 H48 PH1 sing 320 n n C49 H491 PH1 sing 321 n n C49 H492 PH1 sing 322 n n C49 H493 PH1 sing 323 n n C50 H501 PH1 sing 324 n n C50 H502 PH1 sing 325 n n C50 H503 PH1 sing 326 n n C51 C52 PH1 sing 327 n n C51 H511 PH1 sing 328 n n C51 H512 PH1 sing 329 n n C52 C53 PH1 sing 330 n n C52 H52 PH1 sing 331 n n C53 H531 PH1 sing 332 n n C53 H532 PH1 sing 333 n n C53 H533 PH1 sing 334 n n # _atom_sites.entry_id 1QHJ _atom_sites.fract_transf_matrix[1][1] 0.016447 _atom_sites.fract_transf_matrix[1][2] 0.009496 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 PH1 A 1 500 500 PH1 PH1 . D 3 PH1 A 1 501 501 PH1 PH1 . E 3 PH1 A 1 502 502 PH1 PH1 . F 3 PH1 A 1 503 503 PH1 PH1 . G 3 PH1 A 1 504 504 PH1 PH1 . H 3 PH1 A 1 505 505 PH1 PH1 . I 3 PH1 A 1 506 506 PH1 PH1 . J 3 PH1 A 1 507 507 PH1 PH1 . K 3 PH1 A 1 508 508 PH1 PH1 . L 4 HOH A 1 400 400 HOH HOH . L 4 HOH A 2 401 401 HOH HOH . L 4 HOH A 3 402 402 HOH HOH . L 4 HOH A 4 403 403 HOH HOH . L 4 HOH A 5 404 404 HOH HOH . L 4 HOH A 6 405 405 HOH HOH . L 4 HOH A 7 406 406 HOH HOH . L 4 HOH A 8 407 407 HOH HOH . L 4 HOH A 9 408 408 HOH HOH . L 4 HOH A 10 409 409 HOH HOH . L 4 HOH A 11 410 410 HOH HOH . L 4 HOH A 12 412 412 HOH HOH . L 4 HOH A 13 414 414 HOH HOH . L 4 HOH A 14 424 424 HOH HOH . L 4 HOH A 15 425 425 HOH HOH . L 4 HOH A 16 427 427 HOH HOH . L 4 HOH A 17 431 431 HOH HOH . L 4 HOH A 18 432 432 HOH HOH . L 4 HOH A 19 433 433 HOH HOH . L 4 HOH A 20 437 437 HOH HOH . L 4 HOH A 21 438 438 HOH HOH . L 4 HOH A 22 439 439 HOH HOH . L 4 HOH A 23 441 441 HOH HOH . L 4 HOH A 24 442 442 HOH HOH . L 4 HOH A 25 443 443 HOH HOH . L 4 HOH A 26 444 444 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PH1 . . . J 3 20.462 58.889 23.781 1 57.28 ? O1 PH1 507 A 1 HETATM 2 C C1 PH1 . . . J 3 21.301 58.95 22.767 1 57.28 ? C1 PH1 507 A 1 HETATM 3 C C2 PH1 . . . J 3 21.266 57.99 21.527 1 57.28 ? C2 PH1 507 A 1 HETATM 4 C C3 PH1 . . . J 3 22.205 58.435 20.35 1 57.28 ? C3 PH1 507 A 1 HETATM 5 C C4 PH1 . . . J 3 23.669 58.571 20.768 1 57.28 ? C4 PH1 507 A 1 HETATM 6 C C5 PH1 . . . J 3 21.974 57.714 18.989 1 57.28 ? C5 PH1 507 A 1 HETATM 7 C C6 PH1 . . . J 3 22.783 58.24 17.769 1 57.28 ? C6 PH1 507 A 1 HETATM 8 C C7 PH1 . . . J 3 21.962 58.572 16.509 1 57.28 ? C7 PH1 507 A 1 HETATM 9 C C8 PH1 . . . J 3 22.48 57.965 15.198 1 57.28 ? C8 PH1 507 A 1 HETATM 10 C C9 PH1 . . . J 3 22.253 56.44 15.11 1 57.28 ? C9 PH1 507 A 1 HETATM 11 C C10 PH1 . . . J 3 22.026 58.72 13.942 1 57.28 ? C10 PH1 507 A 1 HETATM 12 C C11 PH1 . . . J 3 22.521 58.129 12.617 1 57.28 ? C11 PH1 507 A 1 HETATM 13 C C12 PH1 . . . J 3 22.151 58.917 11.332 1 57.28 ? C12 PH1 507 A 1 HETATM 14 C C13 PH1 . . . J 3 21.686 58.024 10.153 1 57.28 ? C13 PH1 507 A 1 HETATM 15 C C14 PH1 . . . J 3 20.37 57.321 10.39 1 57.28 ? C14 PH1 507 A 1 HETATM 16 C C15 PH1 . . . J 3 21.809 58.631 8.747 1 57.28 ? C15 PH1 507 A 1 HETATM 17 C C16 PH1 . . . J 3 21.68 57.601 7.597 1 57.28 ? C16 PH1 507 A 1 HETATM 18 C C17 PH1 . . . J 3 21.566 58.195 6.176 1 57.28 ? C17 PH1 507 A 1 HETATM 19 C C18 PH1 . . . J 3 22.807 58.049 5.246 1 57.28 ? C18 PH1 507 A 1 HETATM 20 C C19 PH1 . . . J 3 23.773 59.208 5.269 1 57.28 ? C19 PH1 507 A 1 HETATM 21 C C20 PH1 . . . J 3 23.467 56.671 5.2 1 57.28 ? C20 PH1 507 A 1 HETATM 22 O O31 PH1 . . . J 3 17.316 60.228 22.552 1 57.28 ? O31 PH1 507 A 1 HETATM 23 C C31 PH1 . . . J 3 16.8 61.027 21.667 1 57.28 ? C31 PH1 507 A 1 HETATM 24 C C32 PH1 . . . J 3 17.339 61.125 20.228 1 57.28 ? C32 PH1 507 A 1 HETATM 25 C C33 PH1 . . . J 3 16.665 60.272 19.168 1 57.28 ? C33 PH1 507 A 1 HETATM 26 C C34 PH1 . . . J 3 15.185 60.653 18.955 1 57.28 ? C34 PH1 507 A 1 HETATM 27 C C35 PH1 . . . J 3 17.501 60.241 17.878 1 57.28 ? C35 PH1 507 A 1 HETATM 28 C C36 PH1 . . . J 3 16.968 59.407 16.732 1 57.28 ? C36 PH1 507 A 1 HETATM 29 C C37 PH1 . . . J 3 18.042 58.973 15.714 1 57.28 ? C37 PH1 507 A 1 HETATM 30 C C38 PH1 . . . J 3 17.491 58.058 14.633 1 57.28 ? C38 PH1 507 A 1 HETATM 31 C C39 PH1 . . . J 3 16.651 58.761 13.58 1 57.28 ? C39 PH1 507 A 1 HETATM 32 C C40 PH1 . . . J 3 18.442 56.98 14.075 1 57.28 ? C40 PH1 507 A 1 HETATM 33 C C41 PH1 . . . J 3 17.702 55.76 13.414 1 57.28 ? C41 PH1 507 A 1 HETATM 34 C C42 PH1 . . . J 3 18.519 54.973 12.383 1 57.28 ? C42 PH1 507 A 1 HETATM 35 C C43 PH1 . . . J 3 19.589 54.046 12.977 1 57.28 ? C43 PH1 507 A 1 HETATM 36 C C44 PH1 . . . J 3 19.018 52.914 13.768 1 57.28 ? C44 PH1 507 A 1 HETATM 37 C C45 PH1 . . . J 3 20.733 53.623 12.02 1 57.28 ? C45 PH1 507 A 1 HETATM 38 C C46 PH1 . . . J 3 20.316 52.999 10.646 1 57.28 ? C46 PH1 507 A 1 HETATM 39 C C47 PH1 . . . J 3 21.47 52.217 9.943 1 57.28 ? C47 PH1 507 A 1 HETATM 40 C C48 PH1 . . . J 3 21.701 52.447 8.417 1 57.28 ? C48 PH1 507 A 1 HETATM 41 C C49 PH1 . . . J 3 20.658 51.878 7.491 1 57.28 ? C49 PH1 507 A 1 HETATM 42 C C50 PH1 . . . J 3 22.16 53.846 8.013 1 57.28 ? C50 PH1 507 A 1 HETATM 43 C C51 PH1 . . . J 3 19.164 59.079 23.672 1 57.28 ? C51 PH1 507 A 1 HETATM 44 C C52 PH1 . . . J 3 18.491 60.369 23.08 1 57.28 ? C52 PH1 507 A 1 HETATM 45 C C53 PH1 . . . J 3 18.844 61.679 23.859 1 57.28 ? C53 PH1 507 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #