data_1QHR # _model_server_result.job_id 3JQ_u1AXIfpvNSGSTscGNQ _model_server_result.datetime_utc '2024-11-01 01:26:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qhr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 1QHR # _exptl.entry_id 1QHR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.315 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2-HYDROXY-CYCLOPENTYL)-7-OXO-HEPTANAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101 _cell.angle_gamma 90 _cell.entry_id 1QHR _cell.length_a 71.7 _cell.length_b 72 _cell.length_c 73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QHR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? covale ? covale1 B OG SER 205 B SER 195 1_555 D C15 157 . B 157 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.233 ? covale ? covale2 C C GLU 8 I GLU 62 1_555 C N TYS 9 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale3 C C TYS 9 I TYS 63 1_555 C N LEU 10 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C12 H22 N2 O2' _chem_comp.formula_weight 226.315 _chem_comp.id 157 _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2-HYDROXY-CYCLOPENTYL)-7-OXO-HEPTANAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GR157368 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 157 sing 1 n n C1 C16 157 sing 2 n n C1 H11 157 sing 3 n n C1 H12 157 sing 4 n n C2 C3 157 sing 5 n n C2 H21 157 sing 6 n n C2 H22 157 sing 7 n n C3 C4 157 sing 8 n n C3 H31 157 sing 9 n n C3 H32 157 sing 10 n n C4 C5 157 sing 11 n n C4 H41 157 sing 12 n n C4 H42 157 sing 13 n n C5 N6 157 sing 14 n n C5 N7 157 doub 15 n n N6 HN61 157 sing 16 n n N6 HN62 157 sing 17 n n N7 HN7 157 sing 18 n n O8 C15 157 doub 19 n n O9 C13 157 sing 20 n n O9 HO9 157 sing 21 n n C10 C12 157 sing 22 n n C10 C13 157 sing 23 n n C10 C16 157 sing 24 n n C10 H10 157 sing 25 n n C11 C12 157 sing 26 n n C11 C14 157 sing 27 n n C11 H111 157 sing 28 n n C11 H112 157 sing 29 n n C12 H121 157 sing 30 n n C12 H122 157 sing 31 n n C13 C14 157 sing 32 n n C13 H13 157 sing 33 n n C14 H141 157 sing 34 n n C14 H142 157 sing 35 n n C16 C15 157 sing 36 n n C16 H16 157 sing 37 n n C15 H15 157 sing 38 n n # _atom_sites.entry_id 1QHR _atom_sites.fract_transf_matrix[1][1] 0.013947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002711 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 157 B 1 500 500 157 157 . E 5 HOH A 1 300 300 HOH HOH . E 5 HOH A 2 306 306 HOH HOH . E 5 HOH A 3 307 307 HOH HOH . E 5 HOH A 4 309 309 HOH HOH . E 5 HOH A 5 310 310 HOH HOH . E 5 HOH A 6 311 311 HOH HOH . E 5 HOH A 7 314 314 HOH HOH . E 5 HOH A 8 315 315 HOH HOH . E 5 HOH A 9 322 322 HOH HOH . E 5 HOH A 10 331 331 HOH HOH . E 5 HOH A 11 372 372 HOH HOH . E 5 HOH A 12 373 373 HOH HOH . E 5 HOH A 13 377 377 HOH HOH . E 5 HOH A 14 380 380 HOH HOH . E 5 HOH A 15 405 405 HOH HOH . E 5 HOH A 16 406 406 HOH HOH . E 5 HOH A 17 407 407 HOH HOH . E 5 HOH A 18 408 408 HOH HOH . E 5 HOH A 19 410 410 HOH HOH . E 5 HOH A 20 411 411 HOH HOH . E 5 HOH A 21 412 412 HOH HOH . E 5 HOH A 22 413 413 HOH HOH . E 5 HOH A 23 416 416 HOH HOH . E 5 HOH A 24 417 417 HOH HOH . E 5 HOH A 25 418 418 HOH HOH . E 5 HOH A 26 419 419 HOH HOH . E 5 HOH A 27 420 420 HOH HOH . E 5 HOH A 28 421 421 HOH HOH . E 5 HOH A 29 422 422 HOH HOH . E 5 HOH A 30 480 480 HOH HOH . E 5 HOH A 31 481 481 HOH HOH . E 5 HOH A 32 482 482 HOH HOH . E 5 HOH A 33 483 483 HOH HOH . E 5 HOH A 34 484 484 HOH HOH . E 5 HOH A 35 485 485 HOH HOH . F 5 HOH B 1 501 301 HOH HOH . F 5 HOH B 2 502 303 HOH HOH . F 5 HOH B 3 503 304 HOH HOH . F 5 HOH B 4 504 305 HOH HOH . F 5 HOH B 5 505 308 HOH HOH . F 5 HOH B 6 506 312 HOH HOH . F 5 HOH B 7 507 313 HOH HOH . F 5 HOH B 8 508 316 HOH HOH . F 5 HOH B 9 509 317 HOH HOH . F 5 HOH B 10 510 318 HOH HOH . F 5 HOH B 11 511 319 HOH HOH . F 5 HOH B 12 512 320 HOH HOH . F 5 HOH B 13 513 321 HOH HOH . F 5 HOH B 14 514 323 HOH HOH . F 5 HOH B 15 515 324 HOH HOH . F 5 HOH B 16 516 325 HOH HOH . F 5 HOH B 17 517 326 HOH HOH . F 5 HOH B 18 518 327 HOH HOH . F 5 HOH B 19 519 328 HOH HOH . F 5 HOH B 20 520 329 HOH HOH . F 5 HOH B 21 521 330 HOH HOH . F 5 HOH B 22 522 332 HOH HOH . F 5 HOH B 23 523 333 HOH HOH . F 5 HOH B 24 524 334 HOH HOH . F 5 HOH B 25 525 335 HOH HOH . F 5 HOH B 26 526 336 HOH HOH . F 5 HOH B 27 527 338 HOH HOH . F 5 HOH B 28 528 339 HOH HOH . F 5 HOH B 29 529 340 HOH HOH . F 5 HOH B 30 530 341 HOH HOH . F 5 HOH B 31 531 342 HOH HOH . F 5 HOH B 32 532 343 HOH HOH . F 5 HOH B 33 533 344 HOH HOH . F 5 HOH B 34 534 345 HOH HOH . F 5 HOH B 35 535 346 HOH HOH . F 5 HOH B 36 536 347 HOH HOH . F 5 HOH B 37 537 348 HOH HOH . F 5 HOH B 38 538 349 HOH HOH . F 5 HOH B 39 539 350 HOH HOH . F 5 HOH B 40 540 351 HOH HOH . F 5 HOH B 41 541 352 HOH HOH . F 5 HOH B 42 542 353 HOH HOH . F 5 HOH B 43 543 354 HOH HOH . F 5 HOH B 44 544 355 HOH HOH . F 5 HOH B 45 545 356 HOH HOH . F 5 HOH B 46 546 357 HOH HOH . F 5 HOH B 47 547 358 HOH HOH . F 5 HOH B 48 548 359 HOH HOH . F 5 HOH B 49 549 360 HOH HOH . F 5 HOH B 50 550 361 HOH HOH . F 5 HOH B 51 551 362 HOH HOH . F 5 HOH B 52 552 363 HOH HOH . F 5 HOH B 53 553 364 HOH HOH . F 5 HOH B 54 554 365 HOH HOH . F 5 HOH B 55 555 366 HOH HOH . F 5 HOH B 56 556 367 HOH HOH . F 5 HOH B 57 557 368 HOH HOH . F 5 HOH B 58 558 369 HOH HOH . F 5 HOH B 59 559 370 HOH HOH . F 5 HOH B 60 560 371 HOH HOH . F 5 HOH B 61 561 375 HOH HOH . F 5 HOH B 62 562 376 HOH HOH . F 5 HOH B 63 563 378 HOH HOH . F 5 HOH B 64 564 379 HOH HOH . F 5 HOH B 65 565 381 HOH HOH . F 5 HOH B 66 566 382 HOH HOH . F 5 HOH B 67 567 383 HOH HOH . F 5 HOH B 68 568 384 HOH HOH . F 5 HOH B 69 569 385 HOH HOH . F 5 HOH B 70 570 386 HOH HOH . F 5 HOH B 71 571 387 HOH HOH . F 5 HOH B 72 572 388 HOH HOH . F 5 HOH B 73 573 389 HOH HOH . F 5 HOH B 74 574 390 HOH HOH . F 5 HOH B 75 575 391 HOH HOH . F 5 HOH B 76 576 392 HOH HOH . F 5 HOH B 77 577 393 HOH HOH . F 5 HOH B 78 578 394 HOH HOH . F 5 HOH B 79 579 395 HOH HOH . F 5 HOH B 80 580 396 HOH HOH . F 5 HOH B 81 581 397 HOH HOH . F 5 HOH B 82 582 398 HOH HOH . F 5 HOH B 83 583 399 HOH HOH . F 5 HOH B 84 584 400 HOH HOH . F 5 HOH B 85 585 401 HOH HOH . F 5 HOH B 86 586 402 HOH HOH . F 5 HOH B 87 587 403 HOH HOH . F 5 HOH B 88 588 404 HOH HOH . F 5 HOH B 89 589 409 HOH HOH . F 5 HOH B 90 590 414 HOH HOH . F 5 HOH B 91 591 415 HOH HOH . F 5 HOH B 92 592 423 HOH HOH . F 5 HOH B 93 593 424 HOH HOH . F 5 HOH B 94 594 425 HOH HOH . F 5 HOH B 95 595 426 HOH HOH . F 5 HOH B 96 596 427 HOH HOH . F 5 HOH B 97 597 428 HOH HOH . F 5 HOH B 98 598 429 HOH HOH . F 5 HOH B 99 599 430 HOH HOH . F 5 HOH B 100 600 431 HOH HOH . F 5 HOH B 101 601 432 HOH HOH . F 5 HOH B 102 602 433 HOH HOH . F 5 HOH B 103 603 434 HOH HOH . F 5 HOH B 104 604 435 HOH HOH . F 5 HOH B 105 605 436 HOH HOH . F 5 HOH B 106 606 437 HOH HOH . F 5 HOH B 107 607 438 HOH HOH . F 5 HOH B 108 608 439 HOH HOH . F 5 HOH B 109 609 440 HOH HOH . F 5 HOH B 110 610 441 HOH HOH . F 5 HOH B 111 611 447 HOH HOH . F 5 HOH B 112 612 449 HOH HOH . F 5 HOH B 113 613 450 HOH HOH . F 5 HOH B 114 614 451 HOH HOH . F 5 HOH B 115 615 452 HOH HOH . F 5 HOH B 116 616 453 HOH HOH . F 5 HOH B 117 617 454 HOH HOH . F 5 HOH B 118 618 455 HOH HOH . F 5 HOH B 119 619 456 HOH HOH . F 5 HOH B 120 620 458 HOH HOH . F 5 HOH B 121 621 459 HOH HOH . F 5 HOH B 122 622 460 HOH HOH . F 5 HOH B 123 623 461 HOH HOH . F 5 HOH B 124 624 462 HOH HOH . F 5 HOH B 125 625 463 HOH HOH . F 5 HOH B 126 626 464 HOH HOH . F 5 HOH B 127 627 465 HOH HOH . F 5 HOH B 128 628 466 HOH HOH . F 5 HOH B 129 629 467 HOH HOH . F 5 HOH B 130 630 468 HOH HOH . F 5 HOH B 131 631 469 HOH HOH . F 5 HOH B 132 632 470 HOH HOH . F 5 HOH B 133 633 471 HOH HOH . F 5 HOH B 134 634 472 HOH HOH . F 5 HOH B 135 635 473 HOH HOH . F 5 HOH B 136 636 474 HOH HOH . F 5 HOH B 137 637 475 HOH HOH . F 5 HOH B 138 638 476 HOH HOH . F 5 HOH B 139 639 477 HOH HOH . F 5 HOH B 140 640 478 HOH HOH . F 5 HOH B 141 641 479 HOH HOH . F 5 HOH B 142 642 486 HOH HOH . F 5 HOH B 143 643 488 HOH HOH . F 5 HOH B 144 644 489 HOH HOH . F 5 HOH B 145 645 490 HOH HOH . F 5 HOH B 146 646 491 HOH HOH . F 5 HOH B 147 647 492 HOH HOH . F 5 HOH B 148 648 493 HOH HOH . F 5 HOH B 149 649 494 HOH HOH . F 5 HOH B 150 650 495 HOH HOH . F 5 HOH B 151 651 496 HOH HOH . F 5 HOH B 152 652 497 HOH HOH . F 5 HOH B 153 653 498 HOH HOH . F 5 HOH B 154 654 499 HOH HOH . F 5 HOH B 155 655 500 HOH HOH . F 5 HOH B 156 656 501 HOH HOH . F 5 HOH B 157 657 502 HOH HOH . F 5 HOH B 158 658 503 HOH HOH . F 5 HOH B 159 659 504 HOH HOH . F 5 HOH B 160 660 505 HOH HOH . F 5 HOH B 161 661 506 HOH HOH . F 5 HOH B 162 662 507 HOH HOH . F 5 HOH B 163 663 508 HOH HOH . F 5 HOH B 164 664 509 HOH HOH . G 5 HOH I 1 442 442 HOH HOH . G 5 HOH I 2 443 443 HOH HOH . G 5 HOH I 3 444 444 HOH HOH . G 5 HOH I 4 445 445 HOH HOH . G 5 HOH I 5 446 446 HOH HOH . G 5 HOH I 6 487 487 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 157 . . . D 4 8.37 22.24 50.996 0.87 22.18 ? C1 157 500 B 1 HETATM 2 C C2 157 . . . D 4 9.103 23.497 50.589 0.87 20.66 ? C2 157 500 B 1 HETATM 3 C C3 157 . . . D 4 10.223 23.131 49.673 0.87 19.72 ? C3 157 500 B 1 HETATM 4 C C4 157 . . . D 4 9.729 22.468 48.412 0.87 18.67 ? C4 157 500 B 1 HETATM 5 C C5 157 . . . D 4 10.836 22.268 47.435 0.87 17.45 ? C5 157 500 B 1 HETATM 6 N N6 157 . . . D 4 11.226 23.261 46.664 0.87 18.56 ? N6 157 500 B 1 HETATM 7 N N7 157 . . . D 4 11.417 21.109 47.273 0.87 17.89 ? N7 157 500 B 1 HETATM 8 O O8 157 . . . D 4 8.525 23.627 54.065 0.87 21.08 ? O8 157 500 B 1 HETATM 9 O O9 157 . . . D 4 5.332 22.521 54.466 0.87 26.97 ? O9 157 500 B 1 HETATM 10 C C10 157 . . . D 4 6.341 21.64 52.466 0.87 26.39 ? C10 157 500 B 1 HETATM 11 C C11 157 . . . D 4 5.102 19.565 52.516 0.87 29.43 ? C11 157 500 B 1 HETATM 12 C C12 157 . . . D 4 6.269 20.257 51.837 0.87 28.72 ? C12 157 500 B 1 HETATM 13 C C13 157 . . . D 4 5.849 21.37 53.879 0.87 27.01 ? C13 157 500 B 1 HETATM 14 C C14 157 . . . D 4 4.73 20.38 53.743 0.87 27.43 ? C14 157 500 B 1 HETATM 15 C C16 157 . . . D 4 7.737 22.245 52.386 0.87 24.13 ? C16 157 500 B 1 HETATM 16 C C15 157 . . . D 4 7.766 23.549 53.139 0.87 22.86 ? C15 157 500 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #