data_1QI1
#
_model_server_result.job_id            UH-rtgbY1LBDOrNkC6nSBQ 
_model_server_result.datetime_utc      '2025-03-05 22:11:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qi1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    1QI1 
#
_exptl.entry_id    1QI1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1QI1 
_cell.length_a            158.5 
_cell.length_b            158.5 
_cell.length_c            282.8 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QI1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 269 n n 
PA O2A NAP sing 270 n n 
PA O5B NAP sing 271 n n 
PA O3 NAP sing 272 n n 
O2A HOA2 NAP sing 273 n n 
O5B C5B NAP sing 274 n n 
C5B C4B NAP sing 275 n n 
C5B H51A NAP sing 276 n n 
C5B H52A NAP sing 277 n n 
C4B O4B NAP sing 278 n n 
C4B C3B NAP sing 279 n n 
C4B H4B NAP sing 280 n n 
O4B C1B NAP sing 281 n n 
C3B O3B NAP sing 282 n n 
C3B C2B NAP sing 283 n n 
C3B H3B NAP sing 284 n n 
O3B HO3A NAP sing 285 n n 
C2B O2B NAP sing 286 n n 
C2B C1B NAP sing 287 n n 
C2B H2B NAP sing 288 n n 
O2B P2B NAP sing 289 n n 
C1B N9A NAP sing 290 n n 
C1B H1B NAP sing 291 n n 
N9A C8A NAP sing 292 n y 
N9A C4A NAP sing 293 n y 
C8A N7A NAP doub 294 n y 
C8A H8A NAP sing 295 n n 
N7A C5A NAP sing 296 n y 
C5A C6A NAP sing 297 n y 
C5A C4A NAP doub 298 n y 
C6A N6A NAP sing 299 n n 
C6A N1A NAP doub 300 n y 
N6A H61A NAP sing 301 n n 
N6A H62A NAP sing 302 n n 
N1A C2A NAP sing 303 n y 
C2A N3A NAP doub 304 n y 
C2A H2A NAP sing 305 n n 
N3A C4A NAP sing 306 n y 
O3 PN NAP sing 307 n n 
PN O1N NAP doub 308 n n 
PN O2N NAP sing 309 n n 
PN O5D NAP sing 310 n n 
O5D C5D NAP sing 311 n n 
C5D C4D NAP sing 312 n n 
C5D H51N NAP sing 313 n n 
C5D H52N NAP sing 314 n n 
C4D O4D NAP sing 315 n n 
C4D C3D NAP sing 316 n n 
C4D H4D NAP sing 317 n n 
O4D C1D NAP sing 318 n n 
C3D O3D NAP sing 319 n n 
C3D C2D NAP sing 320 n n 
C3D H3D NAP sing 321 n n 
O3D HO3N NAP sing 322 n n 
C2D O2D NAP sing 323 n n 
C2D C1D NAP sing 324 n n 
C2D H2D NAP sing 325 n n 
O2D HO2N NAP sing 326 n n 
C1D N1N NAP sing 327 n n 
C1D H1D NAP sing 328 n n 
N1N C2N NAP sing 329 n y 
N1N C6N NAP doub 330 n y 
C2N C3N NAP doub 331 n y 
C2N H2N NAP sing 332 n n 
C3N C7N NAP sing 333 n n 
C3N C4N NAP sing 334 n y 
C7N O7N NAP doub 335 n n 
C7N N7N NAP sing 336 n n 
N7N H71N NAP sing 337 n n 
N7N H72N NAP sing 338 n n 
C4N C5N NAP doub 339 n y 
C4N H4N NAP sing 340 n n 
C5N C6N NAP sing 341 n y 
C5N H5N NAP sing 342 n n 
C6N H6N NAP sing 343 n n 
P2B O1X NAP doub 344 n n 
P2B O2X NAP sing 345 n n 
P2B O3X NAP sing 346 n n 
O2X HOP2 NAP sing 347 n n 
O3X HOP3 NAP sing 348 n n 
#
_atom_sites.entry_id                     1QI1 
_atom_sites.fract_transf_matrix[1][1]    0.006309 
_atom_sites.fract_transf_matrix[1][2]    0.003642 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003536 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 500 500 NAP NAP . 
F 3 G3H A 1 504 504 G3H G3P . 
G 2 NAP B 1 501 501 NAP NAP . 
H 4 G3P B 1 505 505 G3P G3P . 
I 2 NAP C 1 502 502 NAP NAP . 
J 3 G3H C 1 506 506 G3H G3P . 
K 2 NAP D 1 503 503 NAP NAP . 
L 3 G3H D 1 507 507 G3H G3P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . G 2 -3.53 106.595 -23.735 0.5 11.21 ? PA NAP 501 B 1 
HETATM 2 O O1A NAP . . . G 2 -2.519 105.944 -22.922 0.5 8.9 ? O1A NAP 501 B 1 
HETATM 3 O O2A NAP . . . G 2 -3.076 107.543 -24.755 0.5 10.01 ? O2A NAP 501 B 1 
HETATM 4 O O5B NAP . . . G 2 -4.526 107.361 -22.748 0.5 12.92 ? O5B NAP 501 B 1 
HETATM 5 C C5B NAP . . . G 2 -5.726 107.972 -23.229 0.5 9.63 ? C5B NAP 501 B 1 
HETATM 6 C C4B NAP . . . G 2 -5.716 109.469 -23.031 0.5 9.23 ? C4B NAP 501 B 1 
HETATM 7 O O4B NAP . . . G 2 -4.469 110.01 -23.509 0.5 12.08 ? O4B NAP 501 B 1 
HETATM 8 C C3B NAP . . . G 2 -6.762 110.109 -23.916 0.5 9.94 ? C3B NAP 501 B 1 
HETATM 9 O O3B NAP . . . G 2 -7.392 111.233 -23.301 0.5 9.5 ? O3B NAP 501 B 1 
HETATM 10 C C2B NAP . . . G 2 -5.936 110.504 -25.128 0.5 9 ? C2B NAP 501 B 1 
HETATM 11 O O2B NAP . . . G 2 -6.625 111.33 -26.073 0.5 11.04 ? O2B NAP 501 B 1 
HETATM 12 C C1B NAP . . . G 2 -4.78 111.12 -24.388 0.5 8.92 ? C1B NAP 501 B 1 
HETATM 13 N N9A NAP . . . G 2 -3.578 111.479 -25.173 0.5 7.23 ? N9A NAP 501 B 1 
HETATM 14 C C8A NAP . . . G 2 -2.863 110.619 -25.911 0.5 4.64 ? C8A NAP 501 B 1 
HETATM 15 N N7A NAP . . . G 2 -1.644 111.104 -26.174 0.5 5.2 ? N7A NAP 501 B 1 
HETATM 16 C C5A NAP . . . G 2 -1.622 112.283 -25.574 0.5 6.52 ? C5A NAP 501 B 1 
HETATM 17 C C6A NAP . . . G 2 -0.543 113.163 -25.557 0.5 7.39 ? C6A NAP 501 B 1 
HETATM 18 N N6A NAP . . . G 2 0.611 112.927 -26.177 0.5 3.98 ? N6A NAP 501 B 1 
HETATM 19 N N1A NAP . . . G 2 -0.752 114.327 -24.926 0.5 3.36 ? N1A NAP 501 B 1 
HETATM 20 C C2A NAP . . . G 2 -1.929 114.617 -24.385 0.5 4.93 ? C2A NAP 501 B 1 
HETATM 21 N N3A NAP . . . G 2 -2.95 113.767 -24.409 0.5 4.88 ? N3A NAP 501 B 1 
HETATM 22 C C4A NAP . . . G 2 -2.825 112.563 -24.98 0.5 7 ? C4A NAP 501 B 1 
HETATM 23 O O3 NAP . . . G 2 -4.306 105.502 -24.517 0.5 14.49 ? O3 NAP 501 B 1 
HETATM 24 P PN NAP . . . G 2 -5.169 104.217 -24.144 0.5 14.09 ? PN NAP 501 B 1 
HETATM 25 O O1N NAP . . . G 2 -4.186 103.235 -23.611 0.5 10.11 ? O1N NAP 501 B 1 
HETATM 26 O O2N NAP . . . G 2 -6.072 103.772 -25.251 0.5 9.98 ? O2N NAP 501 B 1 
HETATM 27 O O5D NAP . . . G 2 -6.018 105.119 -23.062 0.5 4.09 ? O5D NAP 501 B 1 
HETATM 28 C C5D NAP . . . G 2 -6.982 104.61 -22.144 0.5 2.4 ? C5D NAP 501 B 1 
HETATM 29 C C4D NAP . . . G 2 -6.303 104.484 -20.804 0.5 2 ? C4D NAP 501 B 1 
HETATM 30 O O4D NAP . . . G 2 -6.961 103.944 -19.655 0.5 2 ? O4D NAP 501 B 1 
HETATM 31 C C3D NAP . . . G 2 -5.024 103.692 -20.896 0.5 2.74 ? C3D NAP 501 B 1 
HETATM 32 O O3D NAP . . . G 2 -4.015 104.684 -20.929 0.5 2 ? O3D NAP 501 B 1 
HETATM 33 C C2D NAP . . . G 2 -4.841 102.924 -19.615 0.5 2.55 ? C2D NAP 501 B 1 
HETATM 34 O O2D NAP . . . G 2 -3.448 102.854 -19.26 0.5 2.25 ? O2D NAP 501 B 1 
HETATM 35 C C1D NAP . . . G 2 -5.746 103.895 -18.903 0.5 2.83 ? C1D NAP 501 B 1 
HETATM 36 N N1N NAP . . . G 2 -5.75 103.813 -17.451 0.5 3.16 ? N1N NAP 501 B 1 
HETATM 37 C C2N NAP . . . G 2 -6.994 103.921 -16.826 0.5 2 ? C2N NAP 501 B 1 
HETATM 38 C C3N NAP . . . G 2 -7.05 103.931 -15.435 0.5 3.41 ? C3N NAP 501 B 1 
HETATM 39 C C7N NAP . . . G 2 -8.145 104.189 -14.71 0.5 2 ? C7N NAP 501 B 1 
HETATM 40 O O7N NAP . . . G 2 -9.009 104.849 -15.287 0.5 2 ? O7N NAP 501 B 1 
HETATM 41 N N7N NAP . . . G 2 -8.208 103.747 -13.456 0.5 2 ? N7N NAP 501 B 1 
HETATM 42 C C4N NAP . . . G 2 -5.869 103.926 -14.705 0.5 4.31 ? C4N NAP 501 B 1 
HETATM 43 C C5N NAP . . . G 2 -4.655 103.766 -15.345 0.5 5.76 ? C5N NAP 501 B 1 
HETATM 44 C C6N NAP . . . G 2 -4.58 103.639 -16.713 0.5 2.02 ? C6N NAP 501 B 1 
HETATM 45 P P2B NAP . . . G 2 -6.935 110.377 -27.361 0.5 7.73 ? P2B NAP 501 B 1 
HETATM 46 O O1X NAP . . . G 2 -5.712 109.628 -27.707 0.5 12.55 ? O1X NAP 501 B 1 
HETATM 47 O O2X NAP . . . G 2 -8.178 109.635 -27.162 0.5 11.01 ? O2X NAP 501 B 1 
HETATM 48 O O3X NAP . . . G 2 -7.244 111.547 -28.415 0.5 7.51 ? O3X NAP 501 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#