data_1QI1
#
_model_server_result.job_id            X0ygUugAdv7zyUVGjQ3m4w 
_model_server_result.datetime_utc      '2025-03-05 22:17:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qi1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":503}' 
#
_entry.id    1QI1 
#
_exptl.entry_id    1QI1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1QI1 
_cell.length_a            158.5 
_cell.length_b            158.5 
_cell.length_c            282.8 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QI1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 269 n n 
PA O2A NAP sing 270 n n 
PA O5B NAP sing 271 n n 
PA O3 NAP sing 272 n n 
O2A HOA2 NAP sing 273 n n 
O5B C5B NAP sing 274 n n 
C5B C4B NAP sing 275 n n 
C5B H51A NAP sing 276 n n 
C5B H52A NAP sing 277 n n 
C4B O4B NAP sing 278 n n 
C4B C3B NAP sing 279 n n 
C4B H4B NAP sing 280 n n 
O4B C1B NAP sing 281 n n 
C3B O3B NAP sing 282 n n 
C3B C2B NAP sing 283 n n 
C3B H3B NAP sing 284 n n 
O3B HO3A NAP sing 285 n n 
C2B O2B NAP sing 286 n n 
C2B C1B NAP sing 287 n n 
C2B H2B NAP sing 288 n n 
O2B P2B NAP sing 289 n n 
C1B N9A NAP sing 290 n n 
C1B H1B NAP sing 291 n n 
N9A C8A NAP sing 292 n y 
N9A C4A NAP sing 293 n y 
C8A N7A NAP doub 294 n y 
C8A H8A NAP sing 295 n n 
N7A C5A NAP sing 296 n y 
C5A C6A NAP sing 297 n y 
C5A C4A NAP doub 298 n y 
C6A N6A NAP sing 299 n n 
C6A N1A NAP doub 300 n y 
N6A H61A NAP sing 301 n n 
N6A H62A NAP sing 302 n n 
N1A C2A NAP sing 303 n y 
C2A N3A NAP doub 304 n y 
C2A H2A NAP sing 305 n n 
N3A C4A NAP sing 306 n y 
O3 PN NAP sing 307 n n 
PN O1N NAP doub 308 n n 
PN O2N NAP sing 309 n n 
PN O5D NAP sing 310 n n 
O5D C5D NAP sing 311 n n 
C5D C4D NAP sing 312 n n 
C5D H51N NAP sing 313 n n 
C5D H52N NAP sing 314 n n 
C4D O4D NAP sing 315 n n 
C4D C3D NAP sing 316 n n 
C4D H4D NAP sing 317 n n 
O4D C1D NAP sing 318 n n 
C3D O3D NAP sing 319 n n 
C3D C2D NAP sing 320 n n 
C3D H3D NAP sing 321 n n 
O3D HO3N NAP sing 322 n n 
C2D O2D NAP sing 323 n n 
C2D C1D NAP sing 324 n n 
C2D H2D NAP sing 325 n n 
O2D HO2N NAP sing 326 n n 
C1D N1N NAP sing 327 n n 
C1D H1D NAP sing 328 n n 
N1N C2N NAP sing 329 n y 
N1N C6N NAP doub 330 n y 
C2N C3N NAP doub 331 n y 
C2N H2N NAP sing 332 n n 
C3N C7N NAP sing 333 n n 
C3N C4N NAP sing 334 n y 
C7N O7N NAP doub 335 n n 
C7N N7N NAP sing 336 n n 
N7N H71N NAP sing 337 n n 
N7N H72N NAP sing 338 n n 
C4N C5N NAP doub 339 n y 
C4N H4N NAP sing 340 n n 
C5N C6N NAP sing 341 n y 
C5N H5N NAP sing 342 n n 
C6N H6N NAP sing 343 n n 
P2B O1X NAP doub 344 n n 
P2B O2X NAP sing 345 n n 
P2B O3X NAP sing 346 n n 
O2X HOP2 NAP sing 347 n n 
O3X HOP3 NAP sing 348 n n 
#
_atom_sites.entry_id                     1QI1 
_atom_sites.fract_transf_matrix[1][1]    0.006309 
_atom_sites.fract_transf_matrix[1][2]    0.003642 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003536 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 500 500 NAP NAP . 
F 3 G3H A 1 504 504 G3H G3P . 
G 2 NAP B 1 501 501 NAP NAP . 
H 4 G3P B 1 505 505 G3P G3P . 
I 2 NAP C 1 502 502 NAP NAP . 
J 3 G3H C 1 506 506 G3H G3P . 
K 2 NAP D 1 503 503 NAP NAP . 
L 3 G3H D 1 507 507 G3H G3P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . K 2 -32.414 132.369 31.493 0.5 11.21 ? PA NAP 503 D 1 
HETATM 2 O O1A NAP . . . K 2 -31.05 132.152 31.989 0.5 8.9 ? O1A NAP 503 D 1 
HETATM 3 O O2A NAP . . . K 2 -33.577 131.888 32.256 0.5 10.01 ? O2A NAP 503 D 1 
HETATM 4 O O5B NAP . . . K 2 -32.458 131.627 30.105 0.5 12.92 ? O5B NAP 503 D 1 
HETATM 5 C C5B NAP . . . K 2 -33.683 131.065 29.619 0.5 9.63 ? C5B NAP 503 D 1 
HETATM 6 C C4B NAP . . . K 2 -33.526 129.59 29.317 0.5 9.23 ? C4B NAP 503 D 1 
HETATM 7 O O4B NAP . . . K 2 -33.079 128.925 30.534 0.5 12.08 ? O4B NAP 503 D 1 
HETATM 8 C C3B NAP . . . K 2 -34.924 129.087 29.04 0.5 9.94 ? C3B NAP 503 D 1 
HETATM 9 O O3B NAP . . . K 2 -34.936 128.045 28.038 0.5 9.5 ? O3B NAP 503 D 1 
HETATM 10 C C2B NAP . . . K 2 -35.378 128.787 30.484 0.5 9 ? C2B NAP 503 D 1 
HETATM 11 O O2B NAP . . . K 2 -36.614 128.08 30.685 0.5 11.04 ? O2B NAP 503 D 1 
HETATM 12 C C1B NAP . . . K 2 -34.14 128.034 30.961 0.5 8.92 ? C1B NAP 503 D 1 
HETATM 13 N N9A NAP . . . K 2 -34.054 127.694 32.403 0.5 7.23 ? N9A NAP 503 D 1 
HETATM 14 C C8A NAP . . . K 2 -34.379 128.496 33.434 0.5 4.64 ? C8A NAP 503 D 1 
HETATM 15 N N7A NAP . . . K 2 -34.012 127.981 34.617 0.5 5.2 ? N7A NAP 503 D 1 
HETATM 16 C C5A NAP . . . K 2 -33.453 126.83 34.287 0.5 6.52 ? C5A NAP 503 D 1 
HETATM 17 C C6A NAP . . . K 2 -32.899 125.931 35.191 0.5 7.39 ? C6A NAP 503 D 1 
HETATM 18 N N6A NAP . . . K 2 -32.682 126.269 36.446 0.5 3.98 ? N6A NAP 503 D 1 
HETATM 19 N N1A NAP . . . K 2 -32.369 124.808 34.687 0.5 3.36 ? N1A NAP 503 D 1 
HETATM 20 C C2A NAP . . . K 2 -32.359 124.605 33.37 0.5 4.93 ? C2A NAP 503 D 1 
HETATM 21 N N3A NAP . . . K 2 -32.882 125.479 32.497 0.5 4.88 ? N3A NAP 503 D 1 
HETATM 22 C C4A NAP . . . K 2 -33.457 126.62 32.924 0.5 7 ? C4A NAP 503 D 1 
HETATM 23 O O3 NAP . . . K 2 -32.658 133.86 31.25 0.5 14.49 ? O3 NAP 503 D 1 
HETATM 24 P PN NAP . . . K 2 -33.926 134.586 30.635 0.5 14.09 ? PN NAP 503 D 1 
HETATM 25 O O1N NAP . . . K 2 -33.88 136.047 30.907 0.5 10.11 ? O1N NAP 503 D 1 
HETATM 26 O O2N NAP . . . K 2 -35.125 133.829 31.088 0.5 9.98 ? O2N NAP 503 D 1 
HETATM 27 O O5D NAP . . . K 2 -33.573 134.335 28.989 0.5 4.09 ? O5D NAP 503 D 1 
HETATM 28 C C5D NAP . . . K 2 -32.94 135.349 28.223 0.5 2.4 ? C5D NAP 503 D 1 
HETATM 29 C C4D NAP . . . K 2 -31.556 135.559 28.758 0.5 2 ? C4D NAP 503 D 1 
HETATM 30 O O4D NAP . . . K 2 -30.769 135.367 27.598 0.5 2 ? O4D NAP 503 D 1 
HETATM 31 C C3D NAP . . . K 2 -31.211 136.976 29.255 0.5 2.74 ? C3D NAP 503 D 1 
HETATM 32 O O3D NAP . . . K 2 -31.164 137.207 30.68 0.5 2 ? O3D NAP 503 D 1 
HETATM 33 C C2D NAP . . . K 2 -29.81 137.212 28.716 0.5 2.55 ? C2D NAP 503 D 1 
HETATM 34 O O2D NAP . . . K 2 -28.9 137.628 29.742 0.5 2.25 ? O2D NAP 503 D 1 
HETATM 35 C C1D NAP . . . K 2 -29.508 135.895 28.015 0.5 2.83 ? C1D NAP 503 D 1 
HETATM 36 N N1N NAP . . . K 2 -28.574 135.966 26.875 0.5 3.16 ? N1N NAP 503 D 1 
HETATM 37 C C2N NAP . . . K 2 -29.029 135.629 25.581 0.5 2 ? C2N NAP 503 D 1 
HETATM 38 C C3N NAP . . . K 2 -28.092 135.525 24.536 0.5 3.41 ? C3N NAP 503 D 1 
HETATM 39 C C7N NAP . . . K 2 -28.446 135.278 23.266 0.5 2 ? C7N NAP 503 D 1 
HETATM 40 O O7N NAP . . . K 2 -29.38 134.508 23.027 0.5 2 ? O7N NAP 503 D 1 
HETATM 41 N N7N NAP . . . K 2 -27.571 135.674 22.355 0.5 2 ? N7N NAP 503 D 1 
HETATM 42 C C4N NAP . . . K 2 -26.729 135.677 24.82 0.5 4.31 ? C4N NAP 503 D 1 
HETATM 43 C C5N NAP . . . K 2 -26.276 136.014 26.094 0.5 5.76 ? C5N NAP 503 D 1 
HETATM 44 C C6N NAP . . . K 2 -27.208 136.193 27.11 0.5 2.02 ? C6N NAP 503 D 1 
HETATM 45 P P2B NAP . . . K 2 -37.837 129.173 30.817 0.5 7.73 ? P2B NAP 503 D 1 
HETATM 46 O O1X NAP . . . K 2 -37.679 130.323 29.879 0.5 12.55 ? O1X NAP 503 D 1 
HETATM 47 O O2X NAP . . . K 2 -39.078 128.373 30.746 0.5 11.01 ? O2X NAP 503 D 1 
HETATM 48 O O3X NAP . . . K 2 -37.714 129.726 32.341 0.5 7.51 ? O3X NAP 503 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#