data_1QI1 # _model_server_result.job_id E00UNySQqmLp8HGyEMk2fg _model_server_result.datetime_utc '2025-03-05 22:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qi1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":505}' # _entry.id 1QI1 # _exptl.entry_id 1QI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.074 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SN-GLYCEROL-3-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QI1 _cell.length_a 158.5 _cell.length_b 158.5 _cell.length_c 282.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H9 O6 P' _chem_comp.formula_weight 172.074 _chem_comp.id G3P _chem_comp.mon_nstd_flag . _chem_comp.name SN-GLYCEROL-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 G3P sing 99 n n C1 C2 G3P sing 100 n n C2 O2 G3P sing 101 n n C2 C3 G3P sing 102 n n C3 O1P G3P sing 103 n n O1P P G3P sing 104 n n O4P P G3P sing 105 n n O2P P G3P doub 106 n n O3P P G3P sing 107 n n O1 HO1 G3P sing 108 n n C1 H11 G3P sing 109 n n C1 H12 G3P sing 110 n n C2 H2 G3P sing 111 n n O2 HO2 G3P sing 112 n n C3 H31 G3P sing 113 n n C3 H32 G3P sing 114 n n O3P HOP3 G3P sing 115 n n O4P HOP4 G3P sing 116 n n # _atom_sites.entry_id 1QI1 _atom_sites.fract_transf_matrix[1][1] 0.006309 _atom_sites.fract_transf_matrix[1][2] 0.003642 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 500 500 NAP NAP . F 3 G3H A 1 504 504 G3H G3P . G 2 NAP B 1 501 501 NAP NAP . H 4 G3P B 1 505 505 G3P G3P . I 2 NAP C 1 502 502 NAP NAP . J 3 G3H C 1 506 506 G3H G3P . K 2 NAP D 1 503 503 NAP NAP . L 3 G3H D 1 507 507 G3H G3P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G3P . . . H 4 -10.306 101.153 -13.868 0.5 2.32 ? O1 G3P 505 B 1 HETATM 2 C C1 G3P . . . H 4 -9.654 101.765 -12.952 0.5 2.32 ? C1 G3P 505 B 1 HETATM 3 C C2 G3P . . . H 4 -10.266 102.998 -12.309 0.5 2.32 ? C2 G3P 505 B 1 HETATM 4 O O2 G3P . . . H 4 -9.292 103.665 -11.498 0.5 2.32 ? O2 G3P 505 B 1 HETATM 5 C C3 G3P . . . H 4 -11.471 102.58 -11.46 0.5 2.32 ? C3 G3P 505 B 1 HETATM 6 O O1P G3P . . . H 4 -11.136 101.476 -10.591 0.5 2.32 ? O1P G3P 505 B 1 HETATM 7 O O4P G3P . . . H 4 -11.658 99.905 -8.702 0.5 2.32 ? O4P G3P 505 B 1 HETATM 8 O O2P G3P . . . H 4 -12.971 101.915 -8.916 0.5 2.32 ? O2P G3P 505 B 1 HETATM 9 O O3P G3P . . . H 4 -13.242 100.122 -10.499 0.5 2.32 ? O3P G3P 505 B 1 HETATM 10 P P G3P . . . H 4 -12.267 100.846 -9.66 0.5 2.32 ? P G3P 505 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #