data_1QI3 # _model_server_result.job_id QBoz19yfnpBzN4RMUFj9Kw _model_server_result.datetime_utc '2025-04-27 18:07:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qi3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":451}' # _entry.id 1QI3 # _exptl.entry_id 1QI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QI3 _cell.length_a 65.77 _cell.length_b 170.8 _cell.length_c 46.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC ? 460 MTT 2 n B GLC 2 B 2 GLC ? 460 MTT 2 n B GLC 3 B 3 GLC ? 460 MTT 2 n B GLC 4 B 4 GLC ? 460 MTT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 140 A CYS 140 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 216 A CYS 216 1_555 A SG CYS 251 A CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 sing covale ? covale2 B O4 GLC . B GLC 2 1_555 B C1 GLC . B GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 sing covale ? covale3 B O4 GLC . B GLC 3 1_555 B C1 GLC . B GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing metalc ? metalc1 A OD1 ASP 1 A ASP 1 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc2 A O GLN 2 A GLN 2 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 A O HIS 13 A HIS 13 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc4 A ND1 HIS 13 A HIS 13 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 A OD1 ASP 16 A ASP 16 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 A OE2 GLU 17 A GLU 17 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc7 A OD1 ASN 116 A ASN 116 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc8 A OD1 ASP 151 A ASP 151 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc9 A OD2 ASP 151 A ASP 151 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc10 A O ASP 154 A ASP 154 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc11 A OD2 ASP 162 A ASP 162 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc12 A O GLY 197 A GLY 197 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc13 C CA CA . A CA 451 1_555 E O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1QI3 _atom_sites.fract_transf_matrix[1][1] 0.015204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 451 451 CA CA . D 3 CA A 1 452 452 CA CA . E 4 HOH A 1 501 501 HOH HOH . E 4 HOH A 2 502 502 HOH HOH . E 4 HOH A 3 503 503 HOH HOH . E 4 HOH A 4 504 504 HOH HOH . E 4 HOH A 5 505 505 HOH HOH . E 4 HOH A 6 506 506 HOH HOH . E 4 HOH A 7 507 507 HOH HOH . E 4 HOH A 8 508 508 HOH HOH . E 4 HOH A 9 509 509 HOH HOH . E 4 HOH A 10 510 510 HOH HOH . E 4 HOH A 11 511 511 HOH HOH . E 4 HOH A 12 512 512 HOH HOH . E 4 HOH A 13 514 514 HOH HOH . E 4 HOH A 14 515 515 HOH HOH . E 4 HOH A 15 516 516 HOH HOH . E 4 HOH A 16 517 517 HOH HOH . E 4 HOH A 17 518 518 HOH HOH . E 4 HOH A 18 519 519 HOH HOH . E 4 HOH A 19 520 520 HOH HOH . E 4 HOH A 20 521 521 HOH HOH . E 4 HOH A 21 522 522 HOH HOH . E 4 HOH A 22 523 523 HOH HOH . E 4 HOH A 23 524 524 HOH HOH . E 4 HOH A 24 525 525 HOH HOH . E 4 HOH A 25 526 526 HOH HOH . E 4 HOH A 26 527 527 HOH HOH . E 4 HOH A 27 528 528 HOH HOH . E 4 HOH A 28 529 529 HOH HOH . E 4 HOH A 29 530 530 HOH HOH . E 4 HOH A 30 531 531 HOH HOH . E 4 HOH A 31 532 532 HOH HOH . E 4 HOH A 32 533 533 HOH HOH . E 4 HOH A 33 534 534 HOH HOH . E 4 HOH A 34 535 535 HOH HOH . E 4 HOH A 35 538 538 HOH HOH . E 4 HOH A 36 540 540 HOH HOH . E 4 HOH A 37 541 541 HOH HOH . E 4 HOH A 38 542 542 HOH HOH . E 4 HOH A 39 543 543 HOH HOH . E 4 HOH A 40 544 544 HOH HOH . E 4 HOH A 41 545 545 HOH HOH . E 4 HOH A 42 546 546 HOH HOH . E 4 HOH A 43 547 547 HOH HOH . E 4 HOH A 44 548 548 HOH HOH . E 4 HOH A 45 549 549 HOH HOH . E 4 HOH A 46 550 550 HOH HOH . E 4 HOH A 47 551 551 HOH HOH . E 4 HOH A 48 552 552 HOH HOH . E 4 HOH A 49 553 553 HOH HOH . E 4 HOH A 50 554 554 HOH HOH . E 4 HOH A 51 557 557 HOH HOH . E 4 HOH A 52 558 558 HOH HOH . E 4 HOH A 53 559 559 HOH HOH . E 4 HOH A 54 561 561 HOH HOH . E 4 HOH A 55 562 562 HOH HOH . E 4 HOH A 56 564 564 HOH HOH . E 4 HOH A 57 565 565 HOH HOH . E 4 HOH A 58 566 566 HOH HOH . E 4 HOH A 59 569 569 HOH HOH . E 4 HOH A 60 570 570 HOH HOH . E 4 HOH A 61 571 571 HOH HOH . E 4 HOH A 62 572 572 HOH HOH . E 4 HOH A 63 573 573 HOH HOH . E 4 HOH A 64 575 575 HOH HOH . E 4 HOH A 65 576 576 HOH HOH . E 4 HOH A 66 579 579 HOH HOH . E 4 HOH A 67 580 580 HOH HOH . E 4 HOH A 68 582 582 HOH HOH . E 4 HOH A 69 584 584 HOH HOH . E 4 HOH A 70 592 592 HOH HOH . E 4 HOH A 71 596 596 HOH HOH . E 4 HOH A 72 597 597 HOH HOH . E 4 HOH A 73 599 599 HOH HOH . E 4 HOH A 74 603 603 HOH HOH . E 4 HOH A 75 604 604 HOH HOH . E 4 HOH A 76 605 605 HOH HOH . E 4 HOH A 77 608 608 HOH HOH . E 4 HOH A 78 610 610 HOH HOH . E 4 HOH A 79 611 611 HOH HOH . E 4 HOH A 80 613 613 HOH HOH . E 4 HOH A 81 615 615 HOH HOH . E 4 HOH A 82 622 622 HOH HOH . E 4 HOH A 83 629 629 HOH HOH . E 4 HOH A 84 631 631 HOH HOH . E 4 HOH A 85 635 635 HOH HOH . E 4 HOH A 86 639 639 HOH HOH . E 4 HOH A 87 644 644 HOH HOH . E 4 HOH A 88 645 645 HOH HOH . E 4 HOH A 89 653 653 HOH HOH . E 4 HOH A 90 662 662 HOH HOH . E 4 HOH A 91 665 665 HOH HOH . E 4 HOH A 92 666 666 HOH HOH . E 4 HOH A 93 667 667 HOH HOH . E 4 HOH A 94 677 677 HOH HOH . E 4 HOH A 95 684 684 HOH HOH . E 4 HOH A 96 685 685 HOH HOH . E 4 HOH A 97 689 689 HOH HOH . E 4 HOH A 98 694 694 HOH HOH . E 4 HOH A 99 705 705 HOH HOH . E 4 HOH A 100 707 707 HOH HOH . E 4 HOH A 101 708 708 HOH HOH . E 4 HOH A 102 710 710 HOH HOH . E 4 HOH A 103 713 713 HOH HOH . E 4 HOH A 104 721 721 HOH HOH . E 4 HOH A 105 724 724 HOH HOH . E 4 HOH A 106 725 725 HOH HOH . E 4 HOH A 107 726 726 HOH HOH . E 4 HOH A 108 727 727 HOH HOH . E 4 HOH A 109 728 728 HOH HOH . E 4 HOH A 110 729 729 HOH HOH . E 4 HOH A 111 730 730 HOH HOH . E 4 HOH A 112 731 731 HOH HOH . E 4 HOH A 113 732 732 HOH HOH . E 4 HOH A 114 733 733 HOH HOH . E 4 HOH A 115 734 734 HOH HOH . E 4 HOH A 116 735 735 HOH HOH . E 4 HOH A 117 736 736 HOH HOH . E 4 HOH A 118 737 737 HOH HOH . E 4 HOH A 119 738 738 HOH HOH . E 4 HOH A 120 739 739 HOH HOH . E 4 HOH A 121 740 740 HOH HOH . E 4 HOH A 122 741 741 HOH HOH . E 4 HOH A 123 742 742 HOH HOH . E 4 HOH A 124 743 743 HOH HOH . E 4 HOH A 125 744 744 HOH HOH . E 4 HOH A 126 745 745 HOH HOH . E 4 HOH A 127 746 746 HOH HOH . E 4 HOH A 128 747 747 HOH HOH . E 4 HOH A 129 748 748 HOH HOH . E 4 HOH A 130 749 749 HOH HOH . E 4 HOH A 131 750 750 HOH HOH . E 4 HOH A 132 751 751 HOH HOH . E 4 HOH A 133 752 752 HOH HOH . E 4 HOH A 134 753 753 HOH HOH . E 4 HOH A 135 754 754 HOH HOH . E 4 HOH A 136 755 755 HOH HOH . E 4 HOH A 137 756 756 HOH HOH . E 4 HOH A 138 757 757 HOH HOH . E 4 HOH A 139 758 758 HOH HOH . E 4 HOH A 140 759 759 HOH HOH . E 4 HOH A 141 760 760 HOH HOH . E 4 HOH A 142 761 761 HOH HOH . E 4 HOH A 143 762 762 HOH HOH . E 4 HOH A 144 763 763 HOH HOH . E 4 HOH A 145 764 764 HOH HOH . E 4 HOH A 146 765 765 HOH HOH . E 4 HOH A 147 766 766 HOH HOH . E 4 HOH A 148 767 767 HOH HOH . E 4 HOH A 149 768 768 HOH HOH . E 4 HOH A 150 769 769 HOH HOH . E 4 HOH A 151 770 770 HOH HOH . E 4 HOH A 152 771 771 HOH HOH . E 4 HOH A 153 772 772 HOH HOH . E 4 HOH A 154 773 773 HOH HOH . E 4 HOH A 155 774 774 HOH HOH . E 4 HOH A 156 775 775 HOH HOH . E 4 HOH A 157 776 776 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.774 _atom_site.Cartn_y 91.71 _atom_site.Cartn_z 12.893 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 451 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #