data_1QIV # _model_server_result.job_id toB741-Qf5jP4yzqw2Rx5g _model_server_result.datetime_utc '2024-10-17 16:26:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qiv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":154}' # _entry.id 1QIV # _exptl.entry_id 1QIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 516.757 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(3,3,-DIPHENYLPROPYL)-N'-[1-R-(2 3,4-BIS-BUTOXYPHENYL)-ETHYL]-PROPYLENEDIAMINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QIV _cell.length_a 40.125 _cell.length_b 40.125 _cell.length_c 173.814 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc3 A OD2 ASP 22 A ASP 22 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.383 ? metalc ? metalc4 A OD1 ASP 24 A ASP 24 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 A O THR 26 A THR 26 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 A OE1 GLU 31 A GLU 31 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc7 A OE2 GLU 31 A GLU 31 1_555 B CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 A OD1 ASP 56 A ASP 56 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc9 A OD1 ASP 58 A ASP 58 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 A OD1 ASN 60 A ASN 60 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc11 A ND2 ASN 60 A ASN 60 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc12 A O THR 62 A THR 62 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc13 A OE1 GLU 67 A GLU 67 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc14 A OE2 GLU 67 A GLU 67 1_555 C CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc15 A OD1 ASP 93 A ASP 93 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc16 A OD1 ASP 95 A ASP 95 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc17 A OD2 ASP 95 A ASP 95 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc18 A OD1 ASN 97 A ASN 97 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc19 A O TYR 99 A TYR 99 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc20 A OE1 GLU 104 A GLU 104 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc21 A OE2 GLU 104 A GLU 104 1_555 D CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc22 A OD1 ASP 129 A ASP 129 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc23 A OD1 ASP 131 A ASP 131 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc24 A OD1 ASP 133 A ASP 133 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc25 A O GLN 135 A GLN 135 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc26 A OE2 GLU 140 A GLU 140 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc27 A OE1 GLU 140 A GLU 140 1_555 E CA CA . A CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C34 H48 N2 O2' _chem_comp.formula_weight 516.757 _chem_comp.id DPD _chem_comp.mon_nstd_flag . _chem_comp.name "N-(3,3,-DIPHENYLPROPYL)-N'-[1-R-(2 3,4-BIS-BUTOXYPHENYL)-ETHYL]-PROPYLENEDIAMINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 DPD doub 70 n y C11 C16 DPD sing 71 n y C11 C1 DPD sing 72 n n C12 C13 DPD sing 73 n y C12 H12 DPD sing 74 n n C13 C14 DPD doub 75 n y C13 H13 DPD sing 76 n n C14 C15 DPD sing 77 n y C14 H14 DPD sing 78 n n C15 C16 DPD doub 79 n y C15 H15 DPD sing 80 n n C16 H16 DPD sing 81 n n C21 C22 DPD doub 82 n y C21 C26 DPD sing 83 n y C21 C1 DPD sing 84 n n C22 C23 DPD sing 85 n y C22 H22 DPD sing 86 n n C23 C24 DPD doub 87 n y C23 H23 DPD sing 88 n n C24 C25 DPD sing 89 n y C24 H24 DPD sing 90 n n C25 C26 DPD doub 91 n y C25 H25 DPD sing 92 n n C26 H26 DPD sing 93 n n C1 C2 DPD sing 94 n n C1 H1 DPD sing 95 n n C2 C3 DPD sing 96 n n C2 H22A DPD sing 97 n n C2 H21 DPD sing 98 n n C3 N4 DPD sing 99 n n C3 H32A DPD sing 100 n n C3 H31 DPD sing 101 n n N4 C5 DPD sing 102 n n N4 H4 DPD sing 103 n n C5 C6 DPD sing 104 n n C5 H52 DPD sing 105 n n C5 H51 DPD sing 106 n n C6 C7 DPD sing 107 n n C6 H62 DPD sing 108 n n C6 H61 DPD sing 109 n n C7 N8 DPD sing 110 n n C7 H72 DPD sing 111 n n C7 H71 DPD sing 112 n n N8 C9 DPD sing 113 n n N8 H8 DPD sing 114 n n C9 C19 DPD sing 115 n n C9 C31 DPD sing 116 n n C9 H9 DPD sing 117 n n C19 H193 DPD sing 118 n n C19 H192 DPD sing 119 n n C19 H191 DPD sing 120 n n C31 C32 DPD doub 121 n y C31 C36 DPD sing 122 n y C32 C33 DPD sing 123 n y C32 H32 DPD sing 124 n n C33 C34 DPD doub 125 n y C33 O3 DPD sing 126 n n C34 C35 DPD sing 127 n y C34 O4 DPD sing 128 n n C35 C36 DPD doub 129 n y C35 H35 DPD sing 130 n n C36 H36 DPD sing 131 n n O3 C41 DPD sing 132 n n C41 C42 DPD sing 133 n n C41 H412 DPD sing 134 n n C41 H411 DPD sing 135 n n C42 C43 DPD sing 136 n n C42 H422 DPD sing 137 n n C42 H421 DPD sing 138 n n C43 C44 DPD sing 139 n n C43 H432 DPD sing 140 n n C43 H431 DPD sing 141 n n C44 H443 DPD sing 142 n n C44 H442 DPD sing 143 n n C44 H441 DPD sing 144 n n O4 C51 DPD sing 145 n n C51 C52 DPD sing 146 n n C51 H512 DPD sing 147 n n C51 H511 DPD sing 148 n n C52 C53 DPD sing 149 n n C52 H522 DPD sing 150 n n C52 H521 DPD sing 151 n n C53 C54 DPD sing 152 n n C53 H532 DPD sing 153 n n C53 H531 DPD sing 154 n n C54 H543 DPD sing 155 n n C54 H542 DPD sing 156 n n C54 H541 DPD sing 157 n n # _atom_sites.entry_id 1QIV _atom_sites.fract_transf_matrix[1][1] 0.024922 _atom_sites.fract_transf_matrix[1][2] 0.014389 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 149 149 CA CA . C 2 CA A 1 150 150 CA CA . D 2 CA A 1 151 151 CA CA . E 2 CA A 1 152 152 CA CA . F 3 DPD A 1 153 153 DPD DPD . G 3 DPD A 1 154 154 DPD DPD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 DPD . . . G 3 14.909 7.135 10.716 1 38.16 ? C11 DPD 154 A 1 HETATM 2 C C12 DPD . . . G 3 15.998 7.058 9.818 1 40.58 ? C12 DPD 154 A 1 HETATM 3 C C13 DPD . . . G 3 16.024 7.819 8.637 1 36.44 ? C13 DPD 154 A 1 HETATM 4 C C14 DPD . . . G 3 14.959 8.672 8.332 1 38.33 ? C14 DPD 154 A 1 HETATM 5 C C15 DPD . . . G 3 13.871 8.762 9.21 1 38.32 ? C15 DPD 154 A 1 HETATM 6 C C16 DPD . . . G 3 13.849 8 10.389 1 36.39 ? C16 DPD 154 A 1 HETATM 7 C C21 DPD . . . G 3 15.744 5.057 11.847 1 42.62 ? C21 DPD 154 A 1 HETATM 8 C C22 DPD . . . G 3 17.097 5.054 12.248 1 42.37 ? C22 DPD 154 A 1 HETATM 9 C C23 DPD . . . G 3 17.892 3.908 12.094 1 40.39 ? C23 DPD 154 A 1 HETATM 10 C C24 DPD . . . G 3 17.348 2.742 11.535 1 40.14 ? C24 DPD 154 A 1 HETATM 11 C C25 DPD . . . G 3 16.007 2.726 11.131 1 37.93 ? C25 DPD 154 A 1 HETATM 12 C C26 DPD . . . G 3 15.212 3.874 11.286 1 41.26 ? C26 DPD 154 A 1 HETATM 13 C C1 DPD . . . G 3 14.875 6.301 12.007 1 42.16 ? C1 DPD 154 A 1 HETATM 14 C C2 DPD . . . G 3 15.253 7.157 13.238 1 45.22 ? C2 DPD 154 A 1 HETATM 15 C C3 DPD . . . G 3 15.194 6.453 14.609 1 47.83 ? C3 DPD 154 A 1 HETATM 16 N N4 DPD . . . G 3 16.367 6.672 15.494 1 47.49 ? N4 DPD 154 A 1 HETATM 17 C C5 DPD . . . G 3 17.111 7.946 15.336 1 44.03 ? C5 DPD 154 A 1 HETATM 18 C C6 DPD . . . G 3 17.839 8.413 16.607 1 45.04 ? C6 DPD 154 A 1 HETATM 19 C C7 DPD . . . G 3 19.342 8.682 16.402 1 46.25 ? C7 DPD 154 A 1 HETATM 20 N N8 DPD . . . G 3 20.129 7.494 15.982 1 53.15 ? N8 DPD 154 A 1 HETATM 21 C C9 DPD . . . G 3 20.29 6.377 16.952 1 59.14 ? C9 DPD 154 A 1 HETATM 22 C C19 DPD . . . G 3 21.77 5.996 17.183 1 58.19 ? C19 DPD 154 A 1 HETATM 23 C C31 DPD . . . G 3 19.454 5.165 16.529 1 59.07 ? C31 DPD 154 A 1 HETATM 24 C C32 DPD . . . G 3 19.925 4.253 15.555 1 56.67 ? C32 DPD 154 A 1 HETATM 25 C C33 DPD . . . G 3 19.175 3.131 15.151 1 53.19 ? C33 DPD 154 A 1 HETATM 26 C C34 DPD . . . G 3 17.888 2.883 15.732 1 50.43 ? C34 DPD 154 A 1 HETATM 27 C C35 DPD . . . G 3 17.428 3.803 16.708 1 52.17 ? C35 DPD 154 A 1 HETATM 28 C C36 DPD . . . G 3 18.186 4.914 17.101 1 53.93 ? C36 DPD 154 A 1 HETATM 29 O O3 DPD . . . G 3 19.781 2.343 14.191 1 51.17 ? O3 DPD 154 A 1 HETATM 30 C C41 DPD . . . G 3 19.712 0.92 14.251 1 45.86 ? C41 DPD 154 A 1 HETATM 31 C C42 DPD . . . G 3 19.397 0.314 12.878 1 35.46 ? C42 DPD 154 A 1 HETATM 32 C C43 DPD . . . G 3 20.643 -0.165 12.131 1 29.38 ? C43 DPD 154 A 1 HETATM 33 C C44 DPD . . . G 3 20.324 -0.932 10.846 1 41.81 ? C44 DPD 154 A 1 HETATM 34 O O4 DPD . . . G 3 17.11 1.802 15.375 1 41.7 ? O4 DPD 154 A 1 HETATM 35 C C51 DPD . . . G 3 15.689 1.862 15.437 1 47.43 ? C51 DPD 154 A 1 HETATM 36 C C52 DPD . . . G 3 15.065 0.61 14.809 1 47.57 ? C52 DPD 154 A 1 HETATM 37 C C53 DPD . . . G 3 13.602 0.799 14.37 1 49.81 ? C53 DPD 154 A 1 HETATM 38 C C54 DPD . . . G 3 13.353 0.454 12.896 1 52.4 ? C54 DPD 154 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #