data_1QKI
#
_model_server_result.job_id            6BcqzxahbEa57WfFLxvzRA 
_model_server_result.datetime_utc      '2024-12-02 16:07:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":900}' 
#
_entry.id    1QKI 
#
_exptl.entry_id    1QKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.051 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLYCOLIC ACID' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1QKI 
_cell.length_a            128.9 
_cell.length_b            208.7 
_cell.length_c            214.3 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS tetrameric 4 software_defined_assembly 1 
PQS tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,DA,EA,FA,GA 1 1 
E,F,G,H,T,U,V,W,X,Y,Z,AA,BA,CA,HA,IA,JA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 P N N 
? 3 S N N 
? 3 U N N 
? 3 X N N 
? 3 Z N N 
? 3 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 12 C CYS 13 1_555 C SG CYS 445 C CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 D SG CYS 12 D CYS 13 1_555 D SG CYS 445 D CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 E SG CYS 12 E CYS 13 1_555 E SG CYS 445 E CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 F SG CYS 12 F CYS 13 1_555 F SG CYS 445 F CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 H SG CYS 12 H CYS 13 1_555 H SG CYS 445 H CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C2 H4 O3' 
_chem_comp.formula_weight    76.051 
_chem_comp.id                GOA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GLYCOLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYDROXYACETIC ACID;HYDROXYETHANOIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C CA GOA sing 129 n n 
C O GOA doub 130 n n 
C OXT GOA sing 131 n n 
CA O2 GOA sing 132 n n 
CA H22 GOA sing 133 n n 
CA H21 GOA sing 134 n n 
OXT HXT GOA sing 135 n n 
O2 H20 GOA sing 136 n n 
#
_atom_sites.entry_id                     1QKI 
_atom_sites.fract_transf_matrix[1][1]    0.007758 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004792 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004666 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NAP A 1 800 800 NAP NAP . 
J 3 GOA A 1 900 900 GOA GOA . 
K 2 NAP B 1 800 800 NAP NAP . 
L 3 GOA B 1 900 900 GOA GOA . 
M 4 GOL B 1 1101 1101 GOL GOL . 
N 4 GOL B 1 1102 1102 GOL GOL . 
O 2 NAP C 1 800 800 NAP NAP . 
P 3 GOA C 1 900 900 GOA GOA . 
Q 4 GOL C 1 1103 1103 GOL GOL . 
R 2 NAP D 1 800 800 NAP NAP . 
S 3 GOA D 1 900 900 GOA GOA . 
T 2 NAP E 1 800 800 NAP NAP . 
U 3 GOA E 1 900 900 GOA GOA . 
V 4 GOL E 1 1105 1105 GOL GOL . 
W 2 NAP F 1 800 800 NAP NAP . 
X 3 GOA F 1 900 900 GOA GOA . 
Y 2 NAP G 1 800 800 NAP NAP . 
Z 3 GOA G 1 900 900 GOA GOA . 
AA 4 GOL G 1 1104 1104 GOL GOL . 
BA 2 NAP H 1 800 800 NAP NAP . 
CA 3 GOA H 1 900 900 GOA GOA . 
DA 5 HOH A 1 2001 2001 HOH HOH . 
DA 5 HOH A 2 2002 2002 HOH HOH . 
DA 5 HOH A 3 2003 2003 HOH HOH . 
DA 5 HOH A 4 2004 2004 HOH HOH . 
DA 5 HOH A 5 2005 2005 HOH HOH . 
DA 5 HOH A 6 2006 2006 HOH HOH . 
DA 5 HOH A 7 2007 2007 HOH HOH . 
DA 5 HOH A 8 2008 2008 HOH HOH . 
DA 5 HOH A 9 2009 2009 HOH HOH . 
DA 5 HOH A 10 2010 2010 HOH HOH . 
DA 5 HOH A 11 2011 2011 HOH HOH . 
DA 5 HOH A 12 2012 2012 HOH HOH . 
DA 5 HOH A 13 2013 2013 HOH HOH . 
EA 5 HOH B 1 2001 2001 HOH HOH . 
EA 5 HOH B 2 2002 2002 HOH HOH . 
EA 5 HOH B 3 2003 2003 HOH HOH . 
EA 5 HOH B 4 2004 2004 HOH HOH . 
EA 5 HOH B 5 2005 2005 HOH HOH . 
EA 5 HOH B 6 2006 2006 HOH HOH . 
EA 5 HOH B 7 2007 2007 HOH HOH . 
EA 5 HOH B 8 2008 2008 HOH HOH . 
EA 5 HOH B 9 2009 2009 HOH HOH . 
FA 5 HOH C 1 2001 2001 HOH HOH . 
FA 5 HOH C 2 2002 2002 HOH HOH . 
FA 5 HOH C 3 2003 2003 HOH HOH . 
GA 5 HOH D 1 2001 2001 HOH HOH . 
GA 5 HOH D 2 2002 2002 HOH HOH . 
GA 5 HOH D 3 2003 2003 HOH HOH . 
GA 5 HOH D 4 2004 2004 HOH HOH . 
GA 5 HOH D 5 2005 2005 HOH HOH . 
GA 5 HOH D 6 2006 2006 HOH HOH . 
GA 5 HOH D 7 2007 2007 HOH HOH . 
GA 5 HOH D 8 2008 2008 HOH HOH . 
HA 5 HOH E 1 2001 2001 HOH HOH . 
HA 5 HOH E 2 2002 2002 HOH HOH . 
HA 5 HOH E 3 2003 2003 HOH HOH . 
HA 5 HOH E 4 2004 2004 HOH HOH . 
HA 5 HOH E 5 2005 2005 HOH HOH . 
HA 5 HOH E 6 2006 2006 HOH HOH . 
HA 5 HOH E 7 2007 2007 HOH HOH . 
HA 5 HOH E 8 2008 2008 HOH HOH . 
HA 5 HOH E 9 2009 2009 HOH HOH . 
HA 5 HOH E 10 2010 2010 HOH HOH . 
HA 5 HOH E 11 2011 2011 HOH HOH . 
IA 5 HOH F 1 2001 2001 HOH HOH . 
IA 5 HOH F 2 2002 2002 HOH HOH . 
IA 5 HOH F 3 2003 2003 HOH HOH . 
JA 5 HOH H 1 2001 2001 HOH HOH . 
JA 5 HOH H 2 2002 2002 HOH HOH . 
JA 5 HOH H 3 2003 2003 HOH HOH . 
JA 5 HOH H 4 2004 2004 HOH HOH . 
JA 5 HOH H 5 2005 2005 HOH HOH . 
JA 5 HOH H 6 2006 2006 HOH HOH . 
JA 5 HOH H 7 2007 2007 HOH HOH . 
JA 5 HOH H 8 2008 2008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C GOA . . . X 3 5.013 163.4 138.218 1 49.71 ? C GOA 900 F 1 
HETATM 2 C CA GOA . . . X 3 5.544 162.918 136.869 1 48.63 ? CA GOA 900 F 1 
HETATM 3 O O GOA . . . X 3 5.221 162.918 139.341 1 46.36 ? O GOA 900 F 1 
HETATM 4 O OXT GOA . . . X 3 4.222 164.487 138.175 1 43.11 ? OXT GOA 900 F 1 
HETATM 5 O O2 GOA . . . X 3 6.914 162.993 136.664 1 48.72 ? O2 GOA 900 F 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           5 
#