data_1QL7 # _model_server_result.job_id 6X8LzkXqVsfgjs3dDqsvXg _model_server_result.datetime_utc '2024-12-22 06:23:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ql7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":999}' # _entry.id 1QL7 # _exptl.entry_id 1QL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QL7 _cell.length_a 54.06 _cell.length_b 58.58 _cell.length_c 63.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc5 B CA CA . A CA 480 1_555 E O HOH . A HOH 2028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 B CA CA . A CA 480 1_555 E O HOH . A HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? # _chem_comp.formula 'C25 H27 Cl N4 O3 S' _chem_comp.formula_weight 499.025 _chem_comp.id ZEN _chem_comp.mon_nstd_flag . _chem_comp.name "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ZEN doub 380 n y N1 C6 ZEN sing 381 n y C2 C3 ZEN sing 382 n y C2 H2 ZEN sing 383 n n C3 C4 ZEN doub 384 n y C3 H3 ZEN sing 385 n n C5 C6 ZEN doub 386 n y C5 C4 ZEN sing 387 n y C5 H5 ZEN sing 388 n n C6 H6 ZEN sing 389 n n C4 N7 ZEN sing 390 n n N7 C8 ZEN sing 391 n n N7 C12 ZEN sing 392 n n C8 C9 ZEN sing 393 n n C8 H82 ZEN sing 394 n n C8 H81 ZEN sing 395 n n C9 C10 ZEN sing 396 n n C9 H92 ZEN sing 397 n n C9 H91 ZEN sing 398 n n C11 C12 ZEN sing 399 n n C11 C10 ZEN sing 400 n n C11 H112 ZEN sing 401 n n C11 H111 ZEN sing 402 n n C12 H122 ZEN sing 403 n n C12 H121 ZEN sing 404 n n C10 C13 ZEN sing 405 n n C10 H10 ZEN sing 406 n n C13 O23 ZEN doub 407 n n C13 N14 ZEN sing 408 n n N14 C15 ZEN sing 409 n n N14 C19 ZEN sing 410 n n C15 C16 ZEN sing 411 n n C15 H152 ZEN sing 412 n n C15 H151 ZEN sing 413 n n C16 N17 ZEN sing 414 n n C16 H162 ZEN sing 415 n n C16 H161 ZEN sing 416 n n C18 C19 ZEN sing 417 n n C18 N17 ZEN sing 418 n n C18 H182 ZEN sing 419 n n C18 H181 ZEN sing 420 n n C19 H192 ZEN sing 421 n n C19 H191 ZEN sing 422 n n N17 S20 ZEN sing 423 n n S20 O21 ZEN doub 424 n n S20 O22 ZEN doub 425 n n S20 C24 ZEN sing 426 n n C24 C25 ZEN doub 427 n y C24 C33 ZEN sing 428 n y C25 C26 ZEN sing 429 n y C25 H25 ZEN sing 430 n n C33 C34 ZEN doub 431 n y C33 H33 ZEN sing 432 n n C34 C27 ZEN sing 433 n y C34 H34 ZEN sing 434 n n C26 C27 ZEN doub 435 n y C26 C31 ZEN sing 436 n y C27 C28 ZEN sing 437 n y C28 C29 ZEN doub 438 n y C28 H28 ZEN sing 439 n n C30 C31 ZEN doub 440 n y C30 C29 ZEN sing 441 n y C30 H30 ZEN sing 442 n n C31 H31 ZEN sing 443 n n C29 CL32 ZEN sing 444 n n # _atom_sites.entry_id 1QL7 _atom_sites.fract_transf_matrix[1][1] 0.018498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 480 480 CA CA . C 3 SO4 A 1 600 600 SO4 SO4 . D 4 ZEN A 1 999 999 ZEN ZEN . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ZEN . . . D 4 18.523 7.548 11.01 1 40.46 ? N1 ZEN 999 A 1 HETATM 2 C C2 ZEN . . . D 4 19.126 6.332 11.081 1 41.42 ? C2 ZEN 999 A 1 HETATM 3 C C3 ZEN . . . D 4 20.368 6.197 11.726 1 39.08 ? C3 ZEN 999 A 1 HETATM 4 C C5 ZEN . . . D 4 20.314 8.576 12.217 1 36.09 ? C5 ZEN 999 A 1 HETATM 5 C C6 ZEN . . . D 4 19.08 8.657 11.557 1 36.1 ? C6 ZEN 999 A 1 HETATM 6 C C4 ZEN . . . D 4 20.966 7.333 12.303 1 37.82 ? C4 ZEN 999 A 1 HETATM 7 N N7 ZEN . . . D 4 22.221 7.221 12.964 1 38.07 ? N7 ZEN 999 A 1 HETATM 8 C C8 ZEN . . . D 4 22.703 5.901 13.396 1 35.54 ? C8 ZEN 999 A 1 HETATM 9 C C9 ZEN . . . D 4 24.25 5.886 13.333 1 32.14 ? C9 ZEN 999 A 1 HETATM 10 C C11 ZEN . . . D 4 24.185 8.425 13.812 1 29.22 ? C11 ZEN 999 A 1 HETATM 11 C C12 ZEN . . . D 4 22.652 8.288 13.879 1 35.2 ? C12 ZEN 999 A 1 HETATM 12 C C10 ZEN . . . D 4 24.915 7.077 14.123 1 29.07 ? C10 ZEN 999 A 1 HETATM 13 C C13 ZEN . . . D 4 26.362 7.226 13.702 1 26.85 ? C13 ZEN 999 A 1 HETATM 14 O O23 ZEN . . . D 4 26.547 7.177 12.483 1 30.93 ? O23 ZEN 999 A 1 HETATM 15 N N14 ZEN . . . D 4 27.369 7.41 14.524 1 18.54 ? N14 ZEN 999 A 1 HETATM 16 C C15 ZEN . . . D 4 27.248 7.471 15.993 1 20.44 ? C15 ZEN 999 A 1 HETATM 17 C C16 ZEN . . . D 4 27.991 8.734 16.508 1 22.01 ? C16 ZEN 999 A 1 HETATM 18 C C18 ZEN . . . D 4 29.33 8.84 14.479 1 20.74 ? C18 ZEN 999 A 1 HETATM 19 C C19 ZEN . . . D 4 28.722 7.529 13.977 1 19.04 ? C19 ZEN 999 A 1 HETATM 20 N N17 ZEN . . . D 4 29.355 8.787 15.938 1 20.62 ? N17 ZEN 999 A 1 HETATM 21 S S20 ZEN . . . D 4 30.234 10.018 16.554 1 20.16 ? S20 ZEN 999 A 1 HETATM 22 O O21 ZEN . . . D 4 31.461 10.116 15.785 1 26.29 ? O21 ZEN 999 A 1 HETATM 23 O O22 ZEN . . . D 4 30.361 9.775 17.968 1 23.29 ? O22 ZEN 999 A 1 HETATM 24 C C24 ZEN . . . D 4 29.352 11.523 16.346 1 17.53 ? C24 ZEN 999 A 1 HETATM 25 C C25 ZEN . . . D 4 29.477 12.239 15.163 1 10.71 ? C25 ZEN 999 A 1 HETATM 26 C C33 ZEN . . . D 4 28.48 11.965 17.35 1 16.41 ? C33 ZEN 999 A 1 HETATM 27 C C34 ZEN . . . D 4 27.754 13.14 17.181 1 14.64 ? C34 ZEN 999 A 1 HETATM 28 C C26 ZEN . . . D 4 28.755 13.412 14.981 1 11.42 ? C26 ZEN 999 A 1 HETATM 29 C C27 ZEN . . . D 4 27.889 13.868 16 1 12.89 ? C27 ZEN 999 A 1 HETATM 30 C C28 ZEN . . . D 4 27.165 15.034 15.817 1 14.4 ? C28 ZEN 999 A 1 HETATM 31 C C30 ZEN . . . D 4 28.158 15.309 13.622 1 16.23 ? C30 ZEN 999 A 1 HETATM 32 C C31 ZEN . . . D 4 28.886 14.139 13.799 1 9.85 ? C31 ZEN 999 A 1 HETATM 33 C C29 ZEN . . . D 4 27.301 15.752 14.632 1 13.99 ? C29 ZEN 999 A 1 HETATM 34 CL CL32 ZEN . . . D 4 26.382 17.189 14.405 1 15.93 ? CL32 ZEN 999 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 669 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #