data_1QL8 # _model_server_result.job_id grcNSPI-fERG4A0BDm1SJA _model_server_result.datetime_utc '2024-10-16 10:31:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ql8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":999}' # _entry.id 1QL8 # _exptl.entry_id 1QL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QL8 _cell.length_a 125.81 _cell.length_b 125.81 _cell.length_c 125.81 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 B CA CA . A CA 480 1_555 A OE1 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 B CA CA . A CA 480 1_555 A O ASN 54 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc3 B CA CA . A CA 480 1_555 A OE1 GLU 59 A GLU 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc4 B CA CA . A CA 480 1_555 A O VAL 57 A VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc5 B CA CA . A CA 480 1_555 A OE2 GLU 62 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? # _chem_comp.formula 'C25 H27 Cl N4 O3 S' _chem_comp.formula_weight 499.025 _chem_comp.id ZEN _chem_comp.mon_nstd_flag . _chem_comp.name "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1QL8 _atom_sites.fract_transf_matrix[1][1] 0.007948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 480 480 CA CA . C 3 SO4 A 1 600 600 SO4 SO4 . D 4 ZEN A 1 999 999 ZEN ZEN . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ZEN . . . D 4 47.581 52.348 77.195 1 22.61 ? N1 ZEN 999 A 1 HETATM 2 C C2 ZEN . . . D 4 48.505 51.356 77.115 1 21.24 ? C2 ZEN 999 A 1 HETATM 3 C C3 ZEN . . . D 4 49.591 51.335 78.002 1 20.5 ? C3 ZEN 999 A 1 HETATM 4 C C5 ZEN . . . D 4 48.75 53.378 79.024 1 19.71 ? C5 ZEN 999 A 1 HETATM 5 C C6 ZEN . . . D 4 47.683 53.35 78.113 1 20.9 ? C6 ZEN 999 A 1 HETATM 6 C C4 ZEN . . . D 4 49.719 52.356 78.969 1 19.2 ? C4 ZEN 999 A 1 HETATM 7 N N7 ZEN . . . D 4 50.829 52.34 79.881 1 21.73 ? N7 ZEN 999 A 1 HETATM 8 C C8 ZEN . . . D 4 51.868 51.29 79.802 1 22.45 ? C8 ZEN 999 A 1 HETATM 9 C C9 ZEN . . . D 4 53.229 51.916 79.443 1 20.9 ? C9 ZEN 999 A 1 HETATM 10 C C11 ZEN . . . D 4 52.533 54.067 80.533 1 20.79 ? C11 ZEN 999 A 1 HETATM 11 C C12 ZEN . . . D 4 51.121 53.47 80.798 1 20.24 ? C12 ZEN 999 A 1 HETATM 12 C C10 ZEN . . . D 4 53.638 52.966 80.51 1 21.71 ? C10 ZEN 999 A 1 HETATM 13 C C13 ZEN . . . D 4 55.04 53.557 80.227 1 26.09 ? C13 ZEN 999 A 1 HETATM 14 O O23 ZEN . . . D 4 55.302 53.749 79.027 1 31.55 ? O23 ZEN 999 A 1 HETATM 15 N N14 ZEN . . . D 4 55.944 53.853 81.161 0 22.27 ? N14 ZEN 999 A 1 HETATM 16 C C15 ZEN . . . D 4 55.743 53.675 82.612 0 19.61 ? C15 ZEN 999 A 1 HETATM 17 C C16 ZEN . . . D 4 55.955 55.053 83.306 0 19.84 ? C16 ZEN 999 A 1 HETATM 18 C C18 ZEN . . . D 4 57.436 55.766 81.456 0 21.78 ? C18 ZEN 999 A 1 HETATM 19 C C19 ZEN . . . D 4 57.259 54.392 80.775 0 21.53 ? C19 ZEN 999 A 1 HETATM 20 N N17 ZEN . . . D 4 57.273 55.634 82.926 0 17.61 ? N17 ZEN 999 A 1 HETATM 21 S S20 ZEN . . . D 4 57.592 57.062 83.712 0 18.55 ? S20 ZEN 999 A 1 HETATM 22 O O21 ZEN . . . D 4 59.027 57.129 83.919 0 16.75 ? O21 ZEN 999 A 1 HETATM 23 O O22 ZEN . . . D 4 56.777 57.101 84.914 0 16.46 ? O22 ZEN 999 A 1 HETATM 24 C C24 ZEN . . . D 4 57.144 58.484 82.728 0 14.82 ? C24 ZEN 999 A 1 HETATM 25 C C25 ZEN . . . D 4 58.001 58.938 81.708 0 16.04 ? C25 ZEN 999 A 1 HETATM 26 C C33 ZEN . . . D 4 55.935 59.162 82.968 0 16.69 ? C33 ZEN 999 A 1 HETATM 27 C C34 ZEN . . . D 4 55.585 60.28 82.192 0 16.2 ? C34 ZEN 999 A 1 HETATM 28 C C26 ZEN . . . D 4 57.656 60.052 80.923 0 18.6 ? C26 ZEN 999 A 1 HETATM 29 C C27 ZEN . . . D 4 56.439 60.731 81.168 0 16.3 ? C27 ZEN 999 A 1 HETATM 30 C C28 ZEN . . . D 4 56.095 61.85 80.385 0 17.17 ? C28 ZEN 999 A 1 HETATM 31 C C30 ZEN . . . D 4 58.164 61.617 79.123 0 17.15 ? C30 ZEN 999 A 1 HETATM 32 C C31 ZEN . . . D 4 58.513 60.5 79.9 0 15.81 ? C31 ZEN 999 A 1 HETATM 33 C C29 ZEN . . . D 4 56.956 62.292 79.364 0 18.54 ? C29 ZEN 999 A 1 HETATM 34 CL CL32 ZEN . . . D 4 56.522 63.685 78.394 0 15.33 ? CL32 ZEN 999 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #