data_1QL9 # _model_server_result.job_id -GXNJtRYCkjjBe1ZcTh-lw _model_server_result.datetime_utc '2024-11-30 10:33:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ql9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":999}' # _entry.id 1QL9 # _exptl.entry_id 1QL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QL9 _cell.length_a 124.14 _cell.length_b 124.14 _cell.length_c 124.14 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 A OE1 GLU 59 A GLU 77 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc6 B CA CA . A CA 480 1_555 E O HOH . A HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? # _chem_comp.formula 'C25 H27 Cl N4 O3 S' _chem_comp.formula_weight 499.025 _chem_comp.id ZEN _chem_comp.mon_nstd_flag . _chem_comp.name "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ZEN doub 380 n y N1 C6 ZEN sing 381 n y C2 C3 ZEN sing 382 n y C2 H2 ZEN sing 383 n n C3 C4 ZEN doub 384 n y C3 H3 ZEN sing 385 n n C5 C6 ZEN doub 386 n y C5 C4 ZEN sing 387 n y C5 H5 ZEN sing 388 n n C6 H6 ZEN sing 389 n n C4 N7 ZEN sing 390 n n N7 C8 ZEN sing 391 n n N7 C12 ZEN sing 392 n n C8 C9 ZEN sing 393 n n C8 H82 ZEN sing 394 n n C8 H81 ZEN sing 395 n n C9 C10 ZEN sing 396 n n C9 H92 ZEN sing 397 n n C9 H91 ZEN sing 398 n n C11 C12 ZEN sing 399 n n C11 C10 ZEN sing 400 n n C11 H112 ZEN sing 401 n n C11 H111 ZEN sing 402 n n C12 H122 ZEN sing 403 n n C12 H121 ZEN sing 404 n n C10 C13 ZEN sing 405 n n C10 H10 ZEN sing 406 n n C13 O23 ZEN doub 407 n n C13 N14 ZEN sing 408 n n N14 C15 ZEN sing 409 n n N14 C19 ZEN sing 410 n n C15 C16 ZEN sing 411 n n C15 H152 ZEN sing 412 n n C15 H151 ZEN sing 413 n n C16 N17 ZEN sing 414 n n C16 H162 ZEN sing 415 n n C16 H161 ZEN sing 416 n n C18 C19 ZEN sing 417 n n C18 N17 ZEN sing 418 n n C18 H182 ZEN sing 419 n n C18 H181 ZEN sing 420 n n C19 H192 ZEN sing 421 n n C19 H191 ZEN sing 422 n n N17 S20 ZEN sing 423 n n S20 O21 ZEN doub 424 n n S20 O22 ZEN doub 425 n n S20 C24 ZEN sing 426 n n C24 C25 ZEN doub 427 n y C24 C33 ZEN sing 428 n y C25 C26 ZEN sing 429 n y C25 H25 ZEN sing 430 n n C33 C34 ZEN doub 431 n y C33 H33 ZEN sing 432 n n C34 C27 ZEN sing 433 n y C34 H34 ZEN sing 434 n n C26 C27 ZEN doub 435 n y C26 C31 ZEN sing 436 n y C27 C28 ZEN sing 437 n y C28 C29 ZEN doub 438 n y C28 H28 ZEN sing 439 n n C30 C31 ZEN doub 440 n y C30 C29 ZEN sing 441 n y C30 H30 ZEN sing 442 n n C31 H31 ZEN sing 443 n n C29 CL32 ZEN sing 444 n n # _atom_sites.entry_id 1QL9 _atom_sites.fract_transf_matrix[1][1] 0.008055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 480 480 CA CA . C 3 SO4 A 1 600 600 SO4 SO4 . D 4 ZEN A 1 999 999 ZEN ZEN . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ZEN . . . D 4 18.223 50.565 59.912 1 39.36 ? N1 ZEN 999 A 1 HETATM 2 C C2 ZEN . . . D 4 17.942 51.001 61.164 1 42.09 ? C2 ZEN 999 A 1 HETATM 3 C C3 ZEN . . . D 4 16.787 50.559 61.824 1 43.69 ? C3 ZEN 999 A 1 HETATM 4 C C5 ZEN . . . D 4 16.251 49.219 59.874 1 43.39 ? C5 ZEN 999 A 1 HETATM 5 C C6 ZEN . . . D 4 17.417 49.695 59.264 1 42.93 ? C6 ZEN 999 A 1 HETATM 6 C C4 ZEN . . . D 4 15.928 49.658 61.167 1 48.25 ? C4 ZEN 999 A 1 HETATM 7 N N7 ZEN . . . D 4 14.75 49.182 61.813 1 53.37 ? N7 ZEN 999 A 1 HETATM 8 C C8 ZEN . . . D 4 14.429 49.532 63.223 1 53.16 ? C8 ZEN 999 A 1 HETATM 9 C C9 ZEN . . . D 4 13.027 50.203 63.321 1 48.77 ? C9 ZEN 999 A 1 HETATM 10 C C11 ZEN . . . D 4 12.377 49.122 61.13 1 49.82 ? C11 ZEN 999 A 1 HETATM 11 C C12 ZEN . . . D 4 13.735 48.393 61.084 1 51.05 ? C12 ZEN 999 A 1 HETATM 12 C C10 ZEN . . . D 4 11.929 49.353 62.609 1 45.17 ? C10 ZEN 999 A 1 HETATM 13 C C13 ZEN . . . D 4 10.566 50.033 62.613 1 39.91 ? C13 ZEN 999 A 1 HETATM 14 O O23 ZEN . . . D 4 10.577 51.238 62.86 1 45.23 ? O23 ZEN 999 A 1 HETATM 15 N N14 ZEN . . . D 4 9.442 49.41 62.337 1 32.68 ? N14 ZEN 999 A 1 HETATM 16 C C15 ZEN . . . D 4 9.366 47.951 62.036 1 31.58 ? C15 ZEN 999 A 1 HETATM 17 C C16 ZEN . . . D 4 8.564 47.732 60.73 1 23.64 ? C16 ZEN 999 A 1 HETATM 18 C C18 ZEN . . . D 4 7.454 49.904 60.988 1 25.98 ? C18 ZEN 999 A 1 HETATM 19 C C19 ZEN . . . D 4 8.166 50.157 62.343 1 29.66 ? C19 ZEN 999 A 1 HETATM 20 N N17 ZEN . . . D 4 7.272 48.443 60.841 1 28.77 ? N17 ZEN 999 A 1 HETATM 21 S S20 ZEN . . . D 4 6.22 48.03 59.648 1 22.86 ? S20 ZEN 999 A 1 HETATM 22 O O21 ZEN . . . D 4 5.068 48.916 59.732 1 19.31 ? O21 ZEN 999 A 1 HETATM 23 O O22 ZEN . . . D 4 5.952 46.627 59.826 1 26.8 ? O22 ZEN 999 A 1 HETATM 24 C C24 ZEN . . . D 4 6.958 48.255 58.038 1 23.7 ? C24 ZEN 999 A 1 HETATM 25 C C25 ZEN . . . D 4 6.953 49.525 57.427 1 21.24 ? C25 ZEN 999 A 1 HETATM 26 C C33 ZEN . . . D 4 7.566 47.169 57.38 1 21.54 ? C33 ZEN 999 A 1 HETATM 27 C C34 ZEN . . . D 4 8.15 47.342 56.116 1 15.48 ? C34 ZEN 999 A 1 HETATM 28 C C26 ZEN . . . D 4 7.535 49.709 56.158 1 16.2 ? C26 ZEN 999 A 1 HETATM 29 C C27 ZEN . . . D 4 8.135 48.606 55.5 1 19.2 ? C27 ZEN 999 A 1 HETATM 30 C C28 ZEN . . . D 4 8.714 48.782 54.247 1 18.54 ? C28 ZEN 999 A 1 HETATM 31 C C30 ZEN . . . D 4 8.104 51.139 54.276 1 18.09 ? C30 ZEN 999 A 1 HETATM 32 C C31 ZEN . . . D 4 7.519 50.972 55.536 1 12.97 ? C31 ZEN 999 A 1 HETATM 33 C C29 ZEN . . . D 4 8.704 50.039 53.635 1 23.06 ? C29 ZEN 999 A 1 HETATM 34 CL CL32 ZEN . . . D 4 9.45 50.228 52.069 1 27.94 ? CL32 ZEN 999 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #