data_1QMF # _model_server_result.job_id Dz_jRF-bB4BRClhZnMf0nQ _model_server_result.datetime_utc '2024-10-14 07:30:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 1QMF # _exptl.entry_id 1QMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.385 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CEFUROXIME (OCT-3-ENE FORM)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QMF _cell.length_a 129.91 _cell.length_b 129.91 _cell.length_c 139.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 289 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 337 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id CES _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CES _struct_conn.ptnr2_auth_seq_id 800 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.411 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H16 N4 O8 S' _chem_comp.formula_weight 424.385 _chem_comp.id KEF _chem_comp.mon_nstd_flag . _chem_comp.name 'CEFUROXIME (OCT-3-ENE FORM)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(6R,7R)-3-CARBAMOYLOXYMETHYL-7-[2-(2-FURYL)-2-(METHOXYIMINO)ACETAMIDO]-8-OXO-5-THIA-1-AZABICYCLO[4.2.0]OCT-3-ENE-2-CARB OXYLIC ACID;(6R,7R)-3-CARBAMOYLOXYMETHYL-7-[2-(2-FURYL)-2-(METHOXYIMINO)ACETAMIDO] CEPH-3-EM-4-CARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 O15 KEF sing 204 n y C14 C19 KEF doub 205 n y C14 C13 KEF sing 206 n n O15 C16 KEF sing 207 n y C16 C17 KEF doub 208 n y C16 H16 KEF sing 209 n n C17 C19 KEF sing 210 n y C17 H17 KEF sing 211 n n C19 H19 KEF sing 212 n n C18 O17 KEF sing 213 n n C18 H183 KEF sing 214 n n C18 H182 KEF sing 215 n n C18 H181 KEF sing 216 n n O17 N16 KEF sing 217 n n N16 C13 KEF doub 218 e n C4' C4 KEF sing 219 n n C4' O4A KEF sing 220 n n C4' O4B KEF doub 221 n n C3' C3 KEF sing 222 n n C3' O3' KEF sing 223 n n C3' "H3'2" KEF sing 224 n n C3' "H3'1" KEF sing 225 n n C11 C13 KEF sing 226 n n C11 N10 KEF sing 227 n n C11 O12 KEF doub 228 n n C2 C3 KEF doub 229 n n C2 S1 KEF sing 230 n n C2 H2 KEF sing 231 n n C3 C4 KEF sing 232 n n C4 N5 KEF sing 233 n n C4 H4 KEF sing 234 n n C6 C7 KEF sing 235 n n C6 N5 KEF sing 236 n n C6 S1 KEF sing 237 n n C6 H6 KEF sing 238 n n C7 C8 KEF sing 239 n n C7 N10 KEF sing 240 n n C7 H7 KEF sing 241 n n C8 N5 KEF sing 242 n n C8 O9 KEF doub 243 n n N10 H10 KEF sing 244 n n O4A H4O KEF sing 245 n n O3' C31 KEF sing 246 n n C31 O31 KEF doub 247 n n C31 N31 KEF sing 248 n n N31 HN31 KEF sing 249 n n N31 HN32 KEF sing 250 n n # _atom_sites.entry_id 1QMF _atom_sites.fract_transf_matrix[1][1] 0.007698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CES A 1 800 800 CES CES . C 3 KEF A 1 900 900 KEF KEF . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 KEF . . . C 3 106.428 58.529 50.856 0.5 53.51 ? C14 KEF 900 A 1 HETATM 2 O O15 KEF . . . C 3 105.536 58.702 51.977 0.5 54.82 ? O15 KEF 900 A 1 HETATM 3 C C16 KEF . . . C 3 105.303 57.385 52.275 0.5 57.38 ? C16 KEF 900 A 1 HETATM 4 C C17 KEF . . . C 3 105.91 56.38 51.517 0.5 63.02 ? C17 KEF 900 A 1 HETATM 5 C C19 KEF . . . C 3 106.573 57.18 50.683 0.5 62.42 ? C19 KEF 900 A 1 HETATM 6 C C18 KEF . . . C 3 110.251 61.054 49.85 0.5 57.89 ? C18 KEF 900 A 1 HETATM 7 O O17 KEF . . . C 3 109.122 60.418 49.261 0.5 58.86 ? O17 KEF 900 A 1 HETATM 8 N N16 KEF . . . C 3 108.238 59.974 50.356 0.5 54.75 ? N16 KEF 900 A 1 HETATM 9 C C4' KEF . . . C 3 102.229 65.467 48.189 0.5 28.07 ? C4' KEF 900 A 1 HETATM 10 C C3' KEF . . . C 3 99.576 63.891 48.835 0.5 31.3 ? C3' KEF 900 A 1 HETATM 11 C C11 KEF . . . C 3 106.344 60.094 48.816 0.5 49.31 ? C11 KEF 900 A 1 HETATM 12 C C13 KEF . . . C 3 107.09 59.572 50.017 0.5 50.48 ? C13 KEF 900 A 1 HETATM 13 C C2 KEF . . . C 3 100.947 61.744 49.049 0.5 31.44 ? C2 KEF 900 A 1 HETATM 14 C C3 KEF . . . C 3 100.97 63.284 48.753 0.5 30.87 ? C3 KEF 900 A 1 HETATM 15 C C4 KEF . . . C 3 102.102 63.957 48.413 0.5 30.83 ? C4 KEF 900 A 1 HETATM 16 C C6 KEF . . . C 3 103.334 61.724 48.031 0.5 39.86 ? C6 KEF 900 A 1 HETATM 17 C C7 KEF . . . C 3 104.951 61.917 47.958 0.5 43.3 ? C7 KEF 900 A 1 HETATM 18 C C8 KEF . . . C 3 104.631 63.415 48.29 0.5 41.39 ? C8 KEF 900 A 1 HETATM 19 N N10 KEF . . . C 3 105.697 61.274 49 0.5 46.01 ? N10 KEF 900 A 1 HETATM 20 N N5 KEF . . . C 3 103.301 63.222 48.187 0.5 35.4 ? N5 KEF 900 A 1 HETATM 21 O O4A KEF . . . C 3 102.651 65.903 47.096 0.5 29.24 ? O4A KEF 900 A 1 HETATM 22 O O4B KEF . . . C 3 101.911 66.235 49.103 0.5 29.81 ? O4B KEF 900 A 1 HETATM 23 O O12 KEF . . . C 3 106.346 59.473 47.757 0.5 49.51 ? O12 KEF 900 A 1 HETATM 24 O O9 KEF . . . C 3 105.324 64.359 48.588 0.5 45.57 ? O9 KEF 900 A 1 HETATM 25 S S1 KEF . . . C 3 102.557 60.973 49.458 0.5 37.53 ? S1 KEF 900 A 1 HETATM 26 O O3' KEF . . . C 3 99.361 64.039 50.262 0.5 40.25 ? O3' KEF 900 A 1 HETATM 27 C C31 KEF . . . C 3 98.218 64.734 50.696 0.5 44.07 ? C31 KEF 900 A 1 HETATM 28 O O31 KEF . . . C 3 97.401 65.056 49.922 0.5 48.74 ? O31 KEF 900 A 1 HETATM 29 N N31 KEF . . . C 3 98.196 64.817 52.221 0.5 41.12 ? N31 KEF 900 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #