data_1QMO # _model_server_result.job_id Tk6e2nAoe4NKIKuF3_KKRg _model_server_result.datetime_utc '2025-04-23 10:01:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":302}' # _entry.id 1QMO # _exptl.entry_id 1QMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QMO _cell.length_a 151.36 _cell.length_b 151.36 _cell.length_c 309.88 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 N N N ? 5 Q N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I CA CA . A CA 300 1_555 E OD2 ASP 9 E ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc2 I CA CA . A CA 300 1_555 E OD1 ASP 9 E ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc3 I CA CA . A CA 300 1_555 E O TYR 11 E TYR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc4 I CA CA . A CA 300 1_555 E OD1 ASN 13 E ASN 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc5 I CA CA . A CA 300 1_555 E OD2 ASP 18 E ASP 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc6 J MN MN . A MN 301 1_555 E OD1 ASP 18 E ASP 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc7 L CA CA . B CA 300 1_555 F OD2 ASP 9 F ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc8 L CA CA . B CA 300 1_555 F OD1 ASP 9 F ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc9 L CA CA . B CA 300 1_555 F O TYR 11 F TYR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc10 L CA CA . B CA 300 1_555 F OD1 ASN 13 F ASN 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc11 L CA CA . B CA 300 1_555 F OD2 ASP 18 F ASP 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc12 M MN MN . B MN 301 1_555 F OD1 ASP 18 F ASP 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc13 O CA CA . C CA 300 1_555 G OD2 ASP 9 G ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc14 O CA CA . C CA 300 1_555 G OD1 ASP 9 G ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc15 O CA CA . C CA 300 1_555 G O TYR 11 G TYR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc16 O CA CA . C CA 300 1_555 G OD1 ASN 13 G ASN 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc17 O CA CA . C CA 300 1_555 G OD2 ASP 18 G ASP 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc18 P MN MN . C MN 301 1_555 G OD1 ASP 18 G ASP 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc19 R CA CA . D CA 300 1_555 H OD1 ASP 9 H ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc20 R CA CA . D CA 300 1_555 H OD2 ASP 9 H ASP 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc21 R CA CA . D CA 300 1_555 H O TYR 11 H TYR 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc22 R CA CA . D CA 300 1_555 H OD1 ASN 13 H ASN 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc23 R CA CA . D CA 300 1_555 H OD2 ASP 18 H ASP 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc24 S MN MN . D MN 301 1_555 H OD1 ASP 18 H ASP 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 203 n n C1 O1 MAN sing 204 n n C1 O5 MAN sing 205 n n C1 H1 MAN sing 206 n n C2 C3 MAN sing 207 n n C2 O2 MAN sing 208 n n C2 H2 MAN sing 209 n n C3 C4 MAN sing 210 n n C3 O3 MAN sing 211 n n C3 H3 MAN sing 212 n n C4 C5 MAN sing 213 n n C4 O4 MAN sing 214 n n C4 H4 MAN sing 215 n n C5 C6 MAN sing 216 n n C5 O5 MAN sing 217 n n C5 H5 MAN sing 218 n n C6 O6 MAN sing 219 n n C6 H61 MAN sing 220 n n C6 H62 MAN sing 221 n n O1 HO1 MAN sing 222 n n O2 HO2 MAN sing 223 n n O3 HO3 MAN sing 224 n n O4 HO4 MAN sing 225 n n O6 HO6 MAN sing 226 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1QMO _atom_sites.fract_transf_matrix[1][1] 0.006607 _atom_sites.fract_transf_matrix[1][2] 0.003814 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 CA A 1 300 300 CA CA . J 4 MN A 1 301 301 MN MN . K 5 MAN A 1 302 302 MAN MAN . L 3 CA B 1 300 300 CA CA . M 4 MN B 1 301 301 MN MN . N 5 MAN B 1 302 302 MAN MAN . O 3 CA C 1 300 300 CA CA . P 4 MN C 1 301 301 MN MN . Q 5 MAN C 1 302 302 MAN MAN . R 3 CA D 1 300 300 CA CA . S 4 MN D 1 301 301 MN MN . T 5 MAN D 1 302 302 MAN MAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . Q 5 102.27 -22.979 10.471 1 57.05 ? C1 MAN 302 C 1 HETATM 2 C C2 MAN . . . Q 5 102.497 -22.978 11.985 1 52.91 ? C2 MAN 302 C 1 HETATM 3 C C3 MAN . . . Q 5 101.215 -23.393 12.705 1 48.09 ? C3 MAN 302 C 1 HETATM 4 C C4 MAN . . . Q 5 100.022 -22.543 12.255 1 44.24 ? C4 MAN 302 C 1 HETATM 5 C C5 MAN . . . Q 5 99.917 -22.487 10.731 1 45.78 ? C5 MAN 302 C 1 HETATM 6 C C6 MAN . . . Q 5 98.894 -21.466 10.275 1 46.47 ? C6 MAN 302 C 1 HETATM 7 O O1 MAN . . . Q 5 102.093 -24.298 9.992 1 60.51 ? O1 MAN 302 C 1 HETATM 8 O O2 MAN . . . Q 5 102.885 -21.679 12.412 1 45.58 ? O2 MAN 302 C 1 HETATM 9 O O3 MAN . . . Q 5 101.397 -23.256 14.106 1 48.06 ? O3 MAN 302 C 1 HETATM 10 O O4 MAN . . . Q 5 98.828 -23.11 12.769 1 43.38 ? O4 MAN 302 C 1 HETATM 11 O O5 MAN . . . Q 5 101.183 -22.11 10.15 1 51.16 ? O5 MAN 302 C 1 HETATM 12 O O6 MAN . . . Q 5 99.398 -20.654 9.225 1 47.26 ? O6 MAN 302 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #