data_1QNF # _model_server_result.job_id lljIIPpWwq7vODUPt5zXSQ _model_server_result.datetime_utc '2024-11-17 18:47:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":486}' # _entry.id 1QNF # _exptl.entry_id 1QNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.322 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QNF _cell.length_a 91.17 _cell.length_b 91.17 _cell.length_c 135.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H17 N3 O7' _chem_comp.formula_weight 363.322 _chem_comp.id HDF _chem_comp.mon_nstd_flag . _chem_comp.name 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HDF sing 220 n y N1 C10 HDF doub 221 n y C2 O2 HDF doub 222 n n C2 N3 HDF sing 223 n y N3 C4 HDF sing 224 n y N3 HN3 HDF sing 225 n n C4 O4 HDF doub 226 n n C4 C4A HDF sing 227 n y C4A C5 HDF doub 228 n y C4A C10 HDF sing 229 n y C5 C5A HDF sing 230 n y C5 H5 HDF sing 231 n n C5A C6 HDF doub 232 n y C5A C9A HDF sing 233 n y C6 C7 HDF sing 234 n y C6 H6 HDF sing 235 n n C7 C8 HDF doub 236 n y C7 H7 HDF sing 237 n n C8 O8 HDF sing 238 n n C8 C9 HDF sing 239 n y O8 HO8 HDF sing 240 n n C9 C9A HDF doub 241 n y C9 H9 HDF sing 242 n n C9A N10 HDF sing 243 n y N10 C10 HDF sing 244 n y N10 C1' HDF sing 245 n n C1' C2' HDF sing 246 n n C1' "H1'1" HDF sing 247 n n C1' "H1'2" HDF sing 248 n n C2' O2' HDF sing 249 n n C2' C3' HDF sing 250 n n C2' H2' HDF sing 251 n n O2' HO2' HDF sing 252 n n C3' O3' HDF sing 253 n n C3' C4' HDF sing 254 n n C3' H3' HDF sing 255 n n O3' HO3' HDF sing 256 n n C4' O4' HDF sing 257 n n C4' C5' HDF sing 258 n n C4' H4' HDF sing 259 n n O4' HO4' HDF sing 260 n n C5' O5' HDF sing 261 n n C5' "H5'1" HDF sing 262 n n C5' "H5'2" HDF sing 263 n n O5' HO5' HDF sing 264 n n # _atom_sites.entry_id 1QNF _atom_sites.fract_transf_matrix[1][1] 0.010969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 485 485 FAD FAD . C 3 HDF A 1 486 486 HDF HDF . D 4 HOH A 1 487 487 HOH HOH . D 4 HOH A 2 488 488 HOH HOH . D 4 HOH A 3 489 489 HOH HOH . D 4 HOH A 4 490 490 HOH HOH . D 4 HOH A 5 491 491 HOH HOH . D 4 HOH A 6 492 492 HOH HOH . D 4 HOH A 7 493 493 HOH HOH . D 4 HOH A 8 494 494 HOH HOH . D 4 HOH A 9 495 495 HOH HOH . D 4 HOH A 10 496 496 HOH HOH . D 4 HOH A 11 497 497 HOH HOH . D 4 HOH A 12 498 498 HOH HOH . D 4 HOH A 13 499 499 HOH HOH . D 4 HOH A 14 500 500 HOH HOH . D 4 HOH A 15 501 501 HOH HOH . D 4 HOH A 16 502 502 HOH HOH . D 4 HOH A 17 503 503 HOH HOH . D 4 HOH A 18 504 504 HOH HOH . D 4 HOH A 19 505 505 HOH HOH . D 4 HOH A 20 506 506 HOH HOH . D 4 HOH A 21 507 507 HOH HOH . D 4 HOH A 22 508 508 HOH HOH . D 4 HOH A 23 509 509 HOH HOH . D 4 HOH A 24 510 510 HOH HOH . D 4 HOH A 25 511 511 HOH HOH . D 4 HOH A 26 512 512 HOH HOH . D 4 HOH A 27 513 513 HOH HOH . D 4 HOH A 28 514 514 HOH HOH . D 4 HOH A 29 515 515 HOH HOH . D 4 HOH A 30 516 516 HOH HOH . D 4 HOH A 31 517 517 HOH HOH . D 4 HOH A 32 518 518 HOH HOH . D 4 HOH A 33 519 519 HOH HOH . D 4 HOH A 34 520 520 HOH HOH . D 4 HOH A 35 521 521 HOH HOH . D 4 HOH A 36 522 522 HOH HOH . D 4 HOH A 37 523 523 HOH HOH . D 4 HOH A 38 524 524 HOH HOH . D 4 HOH A 39 525 525 HOH HOH . D 4 HOH A 40 526 526 HOH HOH . D 4 HOH A 41 527 527 HOH HOH . D 4 HOH A 42 528 528 HOH HOH . D 4 HOH A 43 529 529 HOH HOH . D 4 HOH A 44 530 530 HOH HOH . D 4 HOH A 45 531 531 HOH HOH . D 4 HOH A 46 532 532 HOH HOH . D 4 HOH A 47 533 533 HOH HOH . D 4 HOH A 48 534 534 HOH HOH . D 4 HOH A 49 535 535 HOH HOH . D 4 HOH A 50 536 536 HOH HOH . D 4 HOH A 51 537 537 HOH HOH . D 4 HOH A 52 538 538 HOH HOH . D 4 HOH A 53 539 539 HOH HOH . D 4 HOH A 54 540 540 HOH HOH . D 4 HOH A 55 541 541 HOH HOH . D 4 HOH A 56 542 542 HOH HOH . D 4 HOH A 57 543 543 HOH HOH . D 4 HOH A 58 544 544 HOH HOH . D 4 HOH A 59 545 545 HOH HOH . D 4 HOH A 60 546 546 HOH HOH . D 4 HOH A 61 547 547 HOH HOH . D 4 HOH A 62 548 548 HOH HOH . D 4 HOH A 63 549 549 HOH HOH . D 4 HOH A 64 550 550 HOH HOH . D 4 HOH A 65 551 551 HOH HOH . D 4 HOH A 66 552 552 HOH HOH . D 4 HOH A 67 553 553 HOH HOH . D 4 HOH A 68 554 554 HOH HOH . D 4 HOH A 69 555 555 HOH HOH . D 4 HOH A 70 556 556 HOH HOH . D 4 HOH A 71 557 557 HOH HOH . D 4 HOH A 72 558 558 HOH HOH . D 4 HOH A 73 559 559 HOH HOH . D 4 HOH A 74 560 560 HOH HOH . D 4 HOH A 75 561 561 HOH HOH . D 4 HOH A 76 562 562 HOH HOH . D 4 HOH A 77 563 563 HOH HOH . D 4 HOH A 78 564 564 HOH HOH . D 4 HOH A 79 565 565 HOH HOH . D 4 HOH A 80 566 566 HOH HOH . D 4 HOH A 81 567 567 HOH HOH . D 4 HOH A 82 568 568 HOH HOH . D 4 HOH A 83 569 569 HOH HOH . D 4 HOH A 84 570 570 HOH HOH . D 4 HOH A 85 571 571 HOH HOH . D 4 HOH A 86 572 572 HOH HOH . D 4 HOH A 87 573 573 HOH HOH . D 4 HOH A 88 574 574 HOH HOH . D 4 HOH A 89 575 575 HOH HOH . D 4 HOH A 90 576 576 HOH HOH . D 4 HOH A 91 577 577 HOH HOH . D 4 HOH A 92 578 578 HOH HOH . D 4 HOH A 93 579 579 HOH HOH . D 4 HOH A 94 580 580 HOH HOH . D 4 HOH A 95 581 581 HOH HOH . D 4 HOH A 96 582 582 HOH HOH . D 4 HOH A 97 583 583 HOH HOH . D 4 HOH A 98 584 584 HOH HOH . D 4 HOH A 99 585 585 HOH HOH . D 4 HOH A 100 586 586 HOH HOH . D 4 HOH A 101 587 587 HOH HOH . D 4 HOH A 102 588 588 HOH HOH . D 4 HOH A 103 589 589 HOH HOH . D 4 HOH A 104 590 590 HOH HOH . D 4 HOH A 105 591 591 HOH HOH . D 4 HOH A 106 592 592 HOH HOH . D 4 HOH A 107 593 593 HOH HOH . D 4 HOH A 108 594 594 HOH HOH . D 4 HOH A 109 595 595 HOH HOH . D 4 HOH A 110 596 596 HOH HOH . D 4 HOH A 111 597 597 HOH HOH . D 4 HOH A 112 598 598 HOH HOH . D 4 HOH A 113 599 599 HOH HOH . D 4 HOH A 114 600 600 HOH HOH . D 4 HOH A 115 601 601 HOH HOH . D 4 HOH A 116 602 602 HOH HOH . D 4 HOH A 117 603 603 HOH HOH . D 4 HOH A 118 604 604 HOH HOH . D 4 HOH A 119 605 605 HOH HOH . D 4 HOH A 120 606 606 HOH HOH . D 4 HOH A 121 607 607 HOH HOH . D 4 HOH A 122 608 608 HOH HOH . D 4 HOH A 123 609 609 HOH HOH . D 4 HOH A 124 610 610 HOH HOH . D 4 HOH A 125 611 611 HOH HOH . D 4 HOH A 126 612 612 HOH HOH . D 4 HOH A 127 613 613 HOH HOH . D 4 HOH A 128 614 614 HOH HOH . D 4 HOH A 129 615 615 HOH HOH . D 4 HOH A 130 616 616 HOH HOH . D 4 HOH A 131 617 617 HOH HOH . D 4 HOH A 132 618 618 HOH HOH . D 4 HOH A 133 619 619 HOH HOH . D 4 HOH A 134 620 620 HOH HOH . D 4 HOH A 135 621 621 HOH HOH . D 4 HOH A 136 622 622 HOH HOH . D 4 HOH A 137 623 623 HOH HOH . D 4 HOH A 138 624 624 HOH HOH . D 4 HOH A 139 625 625 HOH HOH . D 4 HOH A 140 626 626 HOH HOH . D 4 HOH A 141 627 627 HOH HOH . D 4 HOH A 142 628 628 HOH HOH . D 4 HOH A 143 629 629 HOH HOH . D 4 HOH A 144 630 630 HOH HOH . D 4 HOH A 145 631 631 HOH HOH . D 4 HOH A 146 632 632 HOH HOH . D 4 HOH A 147 633 633 HOH HOH . D 4 HOH A 148 634 634 HOH HOH . D 4 HOH A 149 635 635 HOH HOH . D 4 HOH A 150 636 636 HOH HOH . D 4 HOH A 151 637 637 HOH HOH . D 4 HOH A 152 638 638 HOH HOH . D 4 HOH A 153 639 639 HOH HOH . D 4 HOH A 154 640 640 HOH HOH . D 4 HOH A 155 641 641 HOH HOH . D 4 HOH A 156 642 642 HOH HOH . D 4 HOH A 157 643 643 HOH HOH . D 4 HOH A 158 644 644 HOH HOH . D 4 HOH A 159 645 645 HOH HOH . D 4 HOH A 160 646 646 HOH HOH . D 4 HOH A 161 647 647 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HDF . . . C 3 42.229 7.131 65.323 1 11.36 ? N1 HDF 486 A 1 HETATM 2 C C2 HDF . . . C 3 41.672 6.087 66.016 1 13.28 ? C2 HDF 486 A 1 HETATM 3 O O2 HDF . . . C 3 41.134 5.13 65.475 1 15.62 ? O2 HDF 486 A 1 HETATM 4 N N3 HDF . . . C 3 41.698 6.218 67.371 1 13.4 ? N3 HDF 486 A 1 HETATM 5 C C4 HDF . . . C 3 42.24 7.281 68.066 1 15.14 ? C4 HDF 486 A 1 HETATM 6 O O4 HDF . . . C 3 42.199 7.259 69.289 1 10.61 ? O4 HDF 486 A 1 HETATM 7 C C4A HDF . . . C 3 42.826 8.283 67.228 1 14.45 ? C4A HDF 486 A 1 HETATM 8 C C5 HDF . . . C 3 43.448 9.297 67.879 1 13.74 ? C5 HDF 486 A 1 HETATM 9 C C5A HDF . . . C 3 44.102 10.243 67.173 1 13.29 ? C5A HDF 486 A 1 HETATM 10 C C6 HDF . . . C 3 44.714 11.229 67.832 1 15 ? C6 HDF 486 A 1 HETATM 11 C C7 HDF . . . C 3 45.406 12.161 67.151 1 13.08 ? C7 HDF 486 A 1 HETATM 12 C C8 HDF . . . C 3 45.468 12.069 65.791 1 11.73 ? C8 HDF 486 A 1 HETATM 13 O O8 HDF . . . C 3 46.291 12.914 65.102 1 10.94 ? O8 HDF 486 A 1 HETATM 14 C C9 HDF . . . C 3 44.843 11.078 65.126 1 13.59 ? C9 HDF 486 A 1 HETATM 15 C C9A HDF . . . C 3 44.144 10.16 65.808 1 13.86 ? C9A HDF 486 A 1 HETATM 16 N N10 HDF . . . C 3 43.504 9.182 65.096 1 14.08 ? N10 HDF 486 A 1 HETATM 17 C C10 HDF . . . C 3 42.864 8.245 65.839 1 13.15 ? C10 HDF 486 A 1 HETATM 18 C C1' HDF . . . C 3 43.085 9.374 63.837 1 12.24 ? C1' HDF 486 A 1 HETATM 19 C C2' HDF . . . C 3 43.839 8.753 62.655 1 16.1 ? C2' HDF 486 A 1 HETATM 20 O O2' HDF . . . C 3 44.993 9.51 62.339 1 15.74 ? O2' HDF 486 A 1 HETATM 21 C C3' HDF . . . C 3 43.946 7.219 62.413 1 14.84 ? C3' HDF 486 A 1 HETATM 22 O O3' HDF . . . C 3 43.594 6.39 63.497 1 15.63 ? O3' HDF 486 A 1 HETATM 23 C C4' HDF . . . C 3 45.097 6.506 61.724 1 17.86 ? C4' HDF 486 A 1 HETATM 24 O O4' HDF . . . C 3 44.785 6.182 60.38 1 17.3 ? O4' HDF 486 A 1 HETATM 25 C C5' HDF . . . C 3 46.522 6.928 61.88 1 20.51 ? C5' HDF 486 A 1 HETATM 26 O O5' HDF . . . C 3 47.386 5.977 61.252 1 19.78 ? O5' HDF 486 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 26 #