data_1QO4 # _model_server_result.job_id Dr7d1VXT9MomgvxJg9F1Ig _model_server_result.datetime_utc '2024-12-22 06:49:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qo4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":374}' # _entry.id 1QO4 # _exptl.entry_id 1QO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QO4 _cell.length_a 46.29 _cell.length_b 74.848 _cell.length_c 80.794 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 11 1_555 A SG CYS 92 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 45 A CYS 44 1_555 A SG CYS 50 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 98 A CYS 97 1_555 A SG CYS 300 A CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 177 A CYS 176 1_555 A SG CYS 209 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A O ASP 44 A ASP 43 1_555 C CA CA . A CA 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 A OD1 ASP 44 A ASP 43 1_555 C CA CA . A CA 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc3 A O VAL 47 A VAL 46 1_555 C CA CA . A CA 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A O GLY 49 A GLY 48 1_555 C CA CA . A CA 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? metalc ? metalc5 A OD1 ASP 51 A ASP 50 1_555 C CA CA . A CA 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc6 A OG SER 53 A SER 52 1_555 C CA CA . A CA 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc7 A NE2 HIS 170 A HIS 169 1_555 B FE HEM . A HEM 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc8 A OG1 THR 171 A THR 170 1_555 D CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc9 A O THR 171 A THR 170 1_555 D CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc10 A OD2 ASP 222 A ASP 221 1_555 D CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc11 A O THR 225 A THR 224 1_555 D CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 A OG1 THR 225 A THR 224 1_555 D CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc13 A O ALA 228 A ALA 227 1_555 D CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc14 A OD1 ASP 230 A ASP 229 1_555 D CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1QO4 _atom_sites.fract_transf_matrix[1][1] 0.021603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 374 374 HEM HEM . C 3 CA A 1 375 375 CA CA . D 3 CA A 1 376 376 CA CA . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . E 4 HOH A 57 2057 2057 HOH HOH . E 4 HOH A 58 2058 2058 HOH HOH . E 4 HOH A 59 2059 2059 HOH HOH . E 4 HOH A 60 2060 2060 HOH HOH . E 4 HOH A 61 2061 2061 HOH HOH . E 4 HOH A 62 2062 2062 HOH HOH . E 4 HOH A 63 2063 2063 HOH HOH . E 4 HOH A 64 2064 2064 HOH HOH . E 4 HOH A 65 2065 2065 HOH HOH . E 4 HOH A 66 2066 2066 HOH HOH . E 4 HOH A 67 2067 2067 HOH HOH . E 4 HOH A 68 2068 2068 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 0.386 -0.377 5.816 1 15 ? CHA HEM 374 A 1 HETATM 2 C CHB HEM . . . B 2 1.499 3.287 8.765 1 15 ? CHB HEM 374 A 1 HETATM 3 C CHC HEM . . . B 2 2.191 6.085 4.869 1 15 ? CHC HEM 374 A 1 HETATM 4 C CHD HEM . . . B 2 1.628 2.277 1.981 1 15 ? CHD HEM 374 A 1 HETATM 5 C C1A HEM . . . B 2 0.718 0.343 6.948 1 15 ? C1A HEM 374 A 1 HETATM 6 C C2A HEM . . . B 2 0.698 -0.159 8.317 1 15 ? C2A HEM 374 A 1 HETATM 7 C C3A HEM . . . B 2 1.028 0.87 9.14 1 15 ? C3A HEM 374 A 1 HETATM 8 C C4A HEM . . . B 2 1.245 2.016 8.285 1 15 ? C4A HEM 374 A 1 HETATM 9 C CMA HEM . . . B 2 1.172 0.783 10.665 1 15 ? CMA HEM 374 A 1 HETATM 10 C CAA HEM . . . B 2 0.361 -1.53 8.856 1 15 ? CAA HEM 374 A 1 HETATM 11 C CBA HEM . . . B 2 1.563 -2.425 9.02 1 15 ? CBA HEM 374 A 1 HETATM 12 C CGA HEM . . . B 2 1.261 -3.638 9.863 1 15 ? CGA HEM 374 A 1 HETATM 13 O O1A HEM . . . B 2 2.032 -4.619 9.799 1 15 ? O1A HEM 374 A 1 HETATM 14 O O2A HEM . . . B 2 0.258 -3.609 10.603 1 15 ? O2A HEM 374 A 1 HETATM 15 C C1B HEM . . . B 2 1.675 4.411 7.978 1 15 ? C1B HEM 374 A 1 HETATM 16 C C2B HEM . . . B 2 1.808 5.743 8.484 1 15 ? C2B HEM 374 A 1 HETATM 17 C C3B HEM . . . B 2 1.994 6.565 7.412 1 15 ? C3B HEM 374 A 1 HETATM 18 C C4B HEM . . . B 2 1.932 5.705 6.212 1 15 ? C4B HEM 374 A 1 HETATM 19 C CMB HEM . . . B 2 1.699 6.149 9.941 1 15 ? CMB HEM 374 A 1 HETATM 20 C CAB HEM . . . B 2 2.322 7.916 7.503 1 15 ? CAB HEM 374 A 1 HETATM 21 C CBB HEM . . . B 2 1.879 8.985 6.624 1 15 ? CBB HEM 374 A 1 HETATM 22 C C1C HEM . . . B 2 2.236 5.259 3.744 1 15 ? C1C HEM 374 A 1 HETATM 23 C C2C HEM . . . B 2 2.662 5.631 2.436 1 15 ? C2C HEM 374 A 1 HETATM 24 C C3C HEM . . . B 2 2.541 4.564 1.596 1 15 ? C3C HEM 374 A 1 HETATM 25 C C4C HEM . . . B 2 2.035 3.527 2.435 1 15 ? C4C HEM 374 A 1 HETATM 26 C CMC HEM . . . B 2 3.239 6.987 2.116 1 15 ? CMC HEM 374 A 1 HETATM 27 C CAC HEM . . . B 2 2.921 4.402 0.262 1 15 ? CAC HEM 374 A 1 HETATM 28 C CBC HEM . . . B 2 2.931 5.396 -0.79 1 15 ? CBC HEM 374 A 1 HETATM 29 C C1D HEM . . . B 2 1.099 1.262 2.786 1 15 ? C1D HEM 374 A 1 HETATM 30 C C2D HEM . . . B 2 0.44 0.104 2.26 1 15 ? C2D HEM 374 A 1 HETATM 31 C C3D HEM . . . B 2 0.114 -0.659 3.337 1 15 ? C3D HEM 374 A 1 HETATM 32 C C4D HEM . . . B 2 0.486 0.084 4.525 1 15 ? C4D HEM 374 A 1 HETATM 33 C CMD HEM . . . B 2 0.039 -0.115 0.808 1 15 ? CMD HEM 374 A 1 HETATM 34 C CAD HEM . . . B 2 -0.447 -2.068 3.286 1 15 ? CAD HEM 374 A 1 HETATM 35 C CBD HEM . . . B 2 0.71 -3.033 3.176 1 15 ? CBD HEM 374 A 1 HETATM 36 C CGD HEM . . . B 2 0.277 -4.467 3.341 1 15 ? CGD HEM 374 A 1 HETATM 37 O O1D HEM . . . B 2 1.159 -5.348 3.403 1 15 ? O1D HEM 374 A 1 HETATM 38 O O2D HEM . . . B 2 -0.947 -4.714 3.408 1 15 ? O2D HEM 374 A 1 HETATM 39 N NA HEM . . . B 2 1.087 1.686 6.939 1 15 ? NA HEM 374 A 1 HETATM 40 N NB HEM . . . B 2 1.687 4.385 6.582 1 15 ? NB HEM 374 A 1 HETATM 41 N NC HEM . . . B 2 1.896 3.939 3.765 1 15 ? NC HEM 374 A 1 HETATM 42 N ND HEM . . . B 2 1.005 1.304 4.184 1 15 ? ND HEM 374 A 1 HETATM 43 FE FE HEM . . . B 2 1.377 2.852 5.379 1 15 ? FE HEM 374 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 43 #