data_1QOO # _model_server_result.job_id wjgvXMdagizv87CIZJm-nQ _model_server_result.datetime_utc '2024-12-25 05:44:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qoo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 1QOO # _exptl.entry_id 1QOO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QOO _cell.length_a 104.48 _cell.length_b 104.48 _cell.length_c 175.35 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 K N N ? 4 N N N ? 4 O N N ? 4 R N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 184 A CYS 184 1_555 C SG CYS 184 C CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 B SG CYS 184 B CYS 184 1_555 D SG CYS 184 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? covale ? covale1 A OG SER 112 A SER 112 1_555 G C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale2 B OG SER 112 B SER 112 1_555 K C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale3 C OG SER 112 C SER 112 1_555 N C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale4 D OG SER 112 D SER 112 1_555 R C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? metalc ? metalc1 A OE2 GLU 126 A GLU 126 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 A OD2 ASP 128 A ASP 128 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc3 A OD1 ASP 128 A ASP 128 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 A OD2 ASP 128 A ASP 128 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc5 A O TYR 130 A TYR 130 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc6 A OD1 ASN 136 A ASN 136 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc7 A OD1 ASP 139 A ASP 139 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 A OD2 ASP 139 A ASP 139 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc9 A NE2 HIS 144 A HIS 144 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc10 B OE2 GLU 126 B GLU 126 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc11 B OD2 ASP 128 B ASP 128 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc12 B OD2 ASP 128 B ASP 128 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc13 B OD1 ASP 128 B ASP 128 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc14 B O TYR 130 B TYR 130 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc15 B OD1 ASN 136 B ASN 136 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc16 B OD1 ASP 139 B ASP 139 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc17 B OD2 ASP 139 B ASP 139 1_555 J CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc18 B NE2 HIS 144 B HIS 144 1_555 I MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc19 C OE2 GLU 126 C GLU 126 1_555 L MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc20 C OD2 ASP 128 C ASP 128 1_555 L MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc21 C OD2 ASP 128 C ASP 128 1_555 M CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc22 C OD1 ASP 128 C ASP 128 1_555 M CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc23 C O TYR 130 C TYR 130 1_555 M CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc24 C OD1 ASN 136 C ASN 136 1_555 M CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc25 C OD1 ASP 139 C ASP 139 1_555 L MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc26 C OD2 ASP 139 C ASP 139 1_555 M CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc27 C NE2 HIS 144 C HIS 144 1_555 L MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc28 D OE2 GLU 126 D GLU 126 1_555 P MN MN . D MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc29 D OD2 ASP 128 D ASP 128 1_555 P MN MN . D MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc30 D OD2 ASP 128 D ASP 128 1_555 Q CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc31 D OD1 ASP 128 D ASP 128 1_555 Q CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc32 D O TYR 130 D TYR 130 1_555 Q CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc33 D OD1 ASN 136 D ASN 136 1_555 Q CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc34 D OD1 ASP 139 D ASP 139 1_555 P MN MN . D MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc35 D OD2 ASP 139 D ASP 139 1_555 Q CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc36 D NE2 HIS 144 D HIS 144 1_555 P MN MN . D MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1QOO _atom_sites.fract_transf_matrix[1][1] 0.009571 _atom_sites.fract_transf_matrix[1][2] 0.005526 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 301 301 MN MN . F 3 CA A 1 302 302 CA CA . G 4 NAG A 1 401 401 NAG NAG . H 4 NAG A 1 501 501 NAG NAG . I 2 MN B 1 303 303 MN MN . J 3 CA B 1 304 304 CA CA . K 4 NAG B 1 401 401 NAG NAG . L 2 MN C 1 305 305 MN MN . M 3 CA C 1 306 306 CA CA . N 4 NAG C 1 401 401 NAG NAG . O 4 NAG C 1 501 501 NAG NAG . P 2 MN D 1 307 307 MN MN . Q 3 CA D 1 308 308 CA CA . R 4 NAG D 1 401 401 NAG NAG . S 4 NAG D 1 501 501 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 78.79 39.116 86.023 1 60.33 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . G 4 78.834 40.125 87.181 1 65.24 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . G 4 80.112 39.893 87.98 1 63.53 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . G 4 80.021 38.499 88.561 1 64.75 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . G 4 79.848 37.46 87.433 1 63.07 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . G 4 79.532 36.102 88.021 1 62.53 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . G 4 78.041 42.364 87.45 1 73.24 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . G 4 77.981 43.795 86.96 1 74.64 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . G 4 78.754 41.499 86.733 1 71.92 ? N2 NAG 401 A 1 HETATM 10 O O3 NAG . . . G 4 80.238 40.852 89.024 1 60.18 ? O3 NAG 401 A 1 HETATM 11 O O4 NAG . . . G 4 81.185 38.217 89.329 1 57.48 ? O4 NAG 401 A 1 HETATM 12 O O5 NAG . . . G 4 78.725 37.791 86.569 1 64.64 ? O5 NAG 401 A 1 HETATM 13 O O6 NAG . . . G 4 78.249 36.107 88.639 1 51.67 ? O6 NAG 401 A 1 HETATM 14 O O7 NAG . . . G 4 77.434 42.043 88.475 1 74.26 ? O7 NAG 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #