data_1QOT # _model_server_result.job_id FZx7LAtp455Ghed4Ld6ADA _model_server_result.datetime_utc '2024-12-25 04:15:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":304}' # _entry.id 1QOT # _exptl.entry_id 1QOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QOT _cell.length_a 104.77 _cell.length_b 104.77 _cell.length_c 175.19 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 M N N ? 5 P N N ? 5 S N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC GAL C1 O1 . O2 HO2 . sing 2 ? 3 2 1 GAL GLC C1 O1 . O4 HO4 . sing 3 ? 3 3 2 FUC GAL C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E GAL 1 E 1 GAL A 502 GAL 2 n E FUC 2 E 2 FUC A 501 FUC 2 n F GAL 1 F 1 GAL B 502 GAL 2 n F FUC 2 F 2 FUC B 501 FUC 3 n G GLC 1 G 1 GLC C 503 GLC 3 n G GAL 2 G 2 GAL C 502 GAL 3 n G FUC 3 G 3 FUC C 501 FUC 2 n H GAL 1 H 1 GAL D 502 GAL 2 n H FUC 2 H 2 FUC D 501 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 184 A CYS 184 1_555 C SG CYS 184 C CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 184 B CYS 184 1_555 D SG CYS 184 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A OG SER 112 A SER 112 1_555 K C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale2 B OG SER 112 B SER 112 1_555 N C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 C OG SER 112 C SER 112 1_555 Q C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 D OG SER 112 D SER 112 1_555 T C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale5 E O2 GAL . E GAL 1 1_555 E C1 FUC . E FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale6 F O2 GAL . F GAL 1 1_555 F C1 FUC . F FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale7 G O4 GLC . G GLC 1 1_555 G C1 GAL . G GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale8 G O2 GAL . G GAL 2 1_555 G C1 FUC . G FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale9 H O2 GAL . H GAL 1 1_555 H C1 FUC . H FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? metalc ? metalc1 A OE2 GLU 126 A GLU 126 1_555 I MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 A OD2 ASP 128 A ASP 128 1_555 I MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A OD1 ASP 128 A ASP 128 1_555 J CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc4 A OD2 ASP 128 A ASP 128 1_555 J CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc5 A O TYR 130 A TYR 130 1_555 J CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc6 A OD1 ASN 136 A ASN 136 1_555 J CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc7 A OD1 ASP 139 A ASP 139 1_555 I MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? metalc ? metalc8 A OD2 ASP 139 A ASP 139 1_555 J CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc9 A NE2 HIS 144 A HIS 144 1_555 I MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc10 B OE2 GLU 126 B GLU 126 1_555 L MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc11 B OD2 ASP 128 B ASP 128 1_555 L MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc12 B OD2 ASP 128 B ASP 128 1_555 M CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc13 B OD1 ASP 128 B ASP 128 1_555 M CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc14 B O TYR 130 B TYR 130 1_555 M CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc15 B OD1 ASN 136 B ASN 136 1_555 M CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc16 B OD1 ASP 139 B ASP 139 1_555 L MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc17 B OD2 ASP 139 B ASP 139 1_555 M CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc18 B NE2 HIS 144 B HIS 144 1_555 L MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc19 C OE2 GLU 126 C GLU 126 1_555 O MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc20 C OD2 ASP 128 C ASP 128 1_555 O MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc21 C OD2 ASP 128 C ASP 128 1_555 P CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc22 C OD1 ASP 128 C ASP 128 1_555 P CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc23 C O TYR 130 C TYR 130 1_555 P CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc24 C OD1 ASN 136 C ASN 136 1_555 P CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc25 C OD1 ASP 139 C ASP 139 1_555 O MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc26 C OD2 ASP 139 C ASP 139 1_555 P CA CA . C CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc27 C NE2 HIS 144 C HIS 144 1_555 O MN MN . C MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc28 D OE2 GLU 126 D GLU 126 1_555 R MN MN . D MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc29 D OD2 ASP 128 D ASP 128 1_555 R MN MN . D MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc30 D OD1 ASP 128 D ASP 128 1_555 S CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc31 D OD2 ASP 128 D ASP 128 1_555 S CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc32 D O TYR 130 D TYR 130 1_555 S CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc33 D OD1 ASN 136 D ASN 136 1_555 S CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc34 D OD1 ASP 139 D ASP 139 1_555 R MN MN . D MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc35 D OD2 ASP 139 D ASP 139 1_555 S CA CA . D CA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc36 D NE2 HIS 144 D HIS 144 1_555 R MN MN . D MN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1QOT _atom_sites.fract_transf_matrix[1][1] 0.009545 _atom_sites.fract_transf_matrix[1][2] 0.005511 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 MN A 1 301 301 MN MN . J 5 CA A 1 302 302 CA CA . K 6 NAG A 1 401 401 NAG NAG . L 4 MN B 1 303 303 MN MN . M 5 CA B 1 304 304 CA CA . N 6 NAG B 1 401 401 NAG NAG . O 4 MN C 1 305 305 MN MN . P 5 CA C 1 306 306 CA CA . Q 6 NAG C 1 401 401 NAG NAG . R 4 MN D 1 307 307 MN MN . S 5 CA D 1 308 308 CA CA . T 6 NAG D 1 401 401 NAG NAG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 5 _atom_site.Cartn_x 78.458 _atom_site.Cartn_y -8.283 _atom_site.Cartn_z 108.874 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #