data_1QP8 # _model_server_result.job_id 9XRDg4uS3b6oy2xT5obwpg _model_server_result.datetime_utc '2024-12-21 12:43:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":310}' # _entry.id 1QP8 # _exptl.entry_id 1QP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QP8 _cell.length_a 101.76 _cell.length_b 101.76 _cell.length_c 212.95 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C LYS 47 A LYS 47 1_555 A N MSE 48 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 48 A MSE 48 1_555 A N PRO 49 A PRO 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 A C LYS 107 A LYS 107 1_555 A N MSE 108 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 108 A MSE 108 1_555 A N LYS 109 A LYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C LEU 199 A LEU 199 1_555 A N MSE 200 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 200 A MSE 200 1_555 A N ALA 201 A ALA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C GLN 273 A GLN 273 1_555 A N MSE 274 A MSE 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C MSE 274 A MSE 274 1_555 A N VAL 275 A VAL 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 A C VAL 275 A VAL 275 1_555 A N MSE 276 A MSE 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C MSE 276 A MSE 276 1_555 A N GLU 277 A GLU 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 B C MSE 1 B MSE 1 1_555 B N GLU 2 B GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C LYS 47 B LYS 47 1_555 B N MSE 48 B MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 48 B MSE 48 1_555 B N PRO 49 B PRO 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale15 B C LYS 107 B LYS 107 1_555 B N MSE 108 B MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 B C MSE 108 B MSE 108 1_555 B N LYS 109 B LYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale17 B C LEU 199 B LEU 199 1_555 B N MSE 200 B MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 B C MSE 200 B MSE 200 1_555 B N ALA 201 B ALA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C GLN 273 B GLN 273 1_555 B N MSE 274 B MSE 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 B C MSE 274 B MSE 274 1_555 B N VAL 275 B VAL 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 B C VAL 275 B VAL 275 1_555 B N MSE 276 B MSE 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 B C MSE 276 B MSE 276 1_555 B N GLU 277 B GLU 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 1QP8 _atom_sites.fract_transf_matrix[1][1] 0.009827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 310 310 NDP NDP . D 3 HOH A 1 500 500 HOH HOH . D 3 HOH A 2 501 501 HOH HOH . D 3 HOH A 3 502 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 34.638 1.058 102.04 0.7 54.47 ? PA NDP 310 A 1 HETATM 2 O O1A NDP . . . C 2 35.86 0.789 102.86 0.7 54.47 ? O1A NDP 310 A 1 HETATM 3 O O2A NDP . . . C 2 34.958 2.498 102.148 0.7 54.47 ? O2A NDP 310 A 1 HETATM 4 O O5B NDP . . . C 2 35.189 -0.156 101.068 0.7 54.47 ? O5B NDP 310 A 1 HETATM 5 C C5B NDP . . . C 2 34.555 -1.451 101.424 0.7 54.47 ? C5B NDP 310 A 1 HETATM 6 C C4B NDP . . . C 2 34.194 -2.251 100.12 0.7 54.47 ? C4B NDP 310 A 1 HETATM 7 O O4B NDP . . . C 2 35.343 -2.927 99.476 0.7 54.47 ? O4B NDP 310 A 1 HETATM 8 C C3B NDP . . . C 2 33.21 -3.46 100.375 0.7 54.47 ? C3B NDP 310 A 1 HETATM 9 O O3B NDP . . . C 2 32.588 -3.839 99.16 0.7 54.47 ? O3B NDP 310 A 1 HETATM 10 C C2B NDP . . . C 2 34.227 -4.444 100.954 0.7 54.47 ? C2B NDP 310 A 1 HETATM 11 O O2B NDP . . . C 2 33.94 -5.766 101.23 0.7 54.47 ? O2B NDP 310 A 1 HETATM 12 C C1B NDP . . . C 2 35.339 -4.278 100.004 0.7 54.47 ? C1B NDP 310 A 1 HETATM 13 N N9A NDP . . . C 2 36.572 -4.797 100.499 0.7 54.47 ? N9A NDP 310 A 1 HETATM 14 C C8A NDP . . . C 2 37.379 -4.4 101.532 0.7 54.47 ? C8A NDP 310 A 1 HETATM 15 N N7A NDP . . . C 2 38.47 -5.159 101.642 0.7 54.47 ? N7A NDP 310 A 1 HETATM 16 C C5A NDP . . . C 2 38.331 -6.073 100.627 0.7 54.47 ? C5A NDP 310 A 1 HETATM 17 C C6A NDP . . . C 2 39.159 -7.178 100.205 0.7 54.47 ? C6A NDP 310 A 1 HETATM 18 N N6A NDP . . . C 2 40.301 -7.451 100.865 0.7 54.47 ? N6A NDP 310 A 1 HETATM 19 N N1A NDP . . . C 2 38.72 -7.931 99.122 0.7 54.47 ? N1A NDP 310 A 1 HETATM 20 C C2A NDP . . . C 2 37.523 -7.589 98.506 0.7 54.47 ? C2A NDP 310 A 1 HETATM 21 N N3A NDP . . . C 2 36.709 -6.601 98.834 0.7 54.47 ? N3A NDP 310 A 1 HETATM 22 C C4A NDP . . . C 2 37.192 -5.867 99.904 0.7 54.47 ? C4A NDP 310 A 1 HETATM 23 O O3 NDP . . . C 2 34.457 1.608 100.582 0.7 54.47 ? O3 NDP 310 A 1 HETATM 24 P PN NDP . . . C 2 34.922 2.775 99.525 0.7 54.47 ? PN NDP 310 A 1 HETATM 25 O O1N NDP . . . C 2 34.229 2.623 98.225 0.7 54.47 ? O1N NDP 310 A 1 HETATM 26 O O2N NDP . . . C 2 34.728 4.151 100.086 0.7 54.47 ? O2N NDP 310 A 1 HETATM 27 O O5D NDP . . . C 2 36.557 2.557 99.317 0.7 54.47 ? O5D NDP 310 A 1 HETATM 28 C C5D NDP . . . C 2 37.449 3.108 100.315 0.7 54.47 ? C5D NDP 310 A 1 HETATM 29 C C4D NDP . . . C 2 38.877 2.86 99.8 0.7 54.47 ? C4D NDP 310 A 1 HETATM 30 O O4D NDP . . . C 2 39.069 3.595 98.567 0.7 54.47 ? O4D NDP 310 A 1 HETATM 31 C C3D NDP . . . C 2 39.913 3.39 100.79 0.7 54.47 ? C3D NDP 310 A 1 HETATM 32 O O3D NDP . . . C 2 40.215 2.367 101.725 0.7 54.47 ? O3D NDP 310 A 1 HETATM 33 C C2D NDP . . . C 2 41.072 3.805 99.845 0.7 54.47 ? C2D NDP 310 A 1 HETATM 34 O O2D NDP . . . C 2 42.016 2.738 99.663 0.7 54.47 ? O2D NDP 310 A 1 HETATM 35 C C1D NDP . . . C 2 40.359 4.254 98.548 0.7 54.47 ? C1D NDP 310 A 1 HETATM 36 N N1N NDP . . . C 2 40.191 5.781 98.444 0.7 54.47 ? N1N NDP 310 A 1 HETATM 37 C C2N NDP . . . C 2 40.837 6.405 97.322 0.7 54.47 ? C2N NDP 310 A 1 HETATM 38 C C3N NDP . . . C 2 40.689 7.81 97.214 0.7 54.47 ? C3N NDP 310 A 1 HETATM 39 C C7N NDP . . . C 2 41.386 8.526 95.992 0.7 54.47 ? C7N NDP 310 A 1 HETATM 40 O O7N NDP . . . C 2 41.11 9.694 95.791 0.7 54.47 ? O7N NDP 310 A 1 HETATM 41 N N7N NDP . . . C 2 42.249 7.789 95.241 0.7 54.47 ? N7N NDP 310 A 1 HETATM 42 C C4N NDP . . . C 2 39.944 8.639 98.138 0.7 54.47 ? C4N NDP 310 A 1 HETATM 43 C C5N NDP . . . C 2 39.353 7.874 99.207 0.7 54.47 ? C5N NDP 310 A 1 HETATM 44 C C6N NDP . . . C 2 39.444 6.527 99.386 0.7 54.47 ? C6N NDP 310 A 1 HETATM 45 P P2B NDP . . . C 2 33.512 -6.061 102.848 0.7 54.47 ? P2B NDP 310 A 1 HETATM 46 O O1X NDP . . . C 2 33.342 -7.552 102.688 0.7 54.47 ? O1X NDP 310 A 1 HETATM 47 O O2X NDP . . . C 2 34.717 -5.618 103.599 0.7 54.47 ? O2X NDP 310 A 1 HETATM 48 O O3X NDP . . . C 2 32.316 -5.268 103.076 0.7 54.47 ? O3X NDP 310 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #