data_1QPD # _model_server_result.job_id lIdgyUP2FXQJA96tS1Sf3g _model_server_result.datetime_utc '2025-01-12 15:01:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 1QPD # _exptl.entry_id 1QPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QPD _cell.length_a 42.2 _cell.length_b 73.8 _cell.length_c 91.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 163 A GLU 393 1_555 A N PTR 164 A PTR 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C PTR 164 A PTR 394 1_555 A N THR 165 A THR 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 323 n n O4 C21 STU sing 324 n n C25 C24 STU sing 325 n n C25 N3 STU sing 326 n n C25 H25 STU sing 327 n n C24 C23 STU sing 328 n n C24 H241 STU sing 329 n n C24 H242 STU sing 330 n n C23 C22 STU sing 331 n n C23 N4 STU sing 332 n n C23 H23 STU sing 333 n n C22 C21 STU sing 334 n n C22 O6 STU sing 335 n n C22 H22 STU sing 336 n n C21 C26 STU sing 337 n n C21 N2 STU sing 338 n n C26 H261 STU sing 339 n n C26 H262 STU sing 340 n n C26 H263 STU sing 341 n n N2 C18 STU sing 342 n y N2 C17 STU sing 343 n y C18 C19 STU doub 344 n y C18 C11 STU sing 345 n y C19 C6 STU sing 346 n y C19 N3 STU sing 347 n y C6 C7 STU doub 348 n y C6 C5 STU sing 349 n y C7 C10 STU sing 350 n y C7 C8 STU sing 351 n n C10 C11 STU doub 352 n y C10 C9 STU sing 353 n n C11 C12 STU sing 354 n y C12 C17 STU doub 355 n y C12 C13 STU sing 356 n y C17 C16 STU sing 357 n y C16 C15 STU doub 358 n y C16 H16 STU sing 359 n n C15 C14 STU sing 360 n y C15 H15 STU sing 361 n n C14 C13 STU doub 362 n y C14 H14 STU sing 363 n n C13 H13 STU sing 364 n n C9 N1 STU sing 365 n n C9 H91 STU sing 366 n n C9 H92 STU sing 367 n n N1 C8 STU sing 368 n n N1 HN1 STU sing 369 n n C8 O5 STU doub 370 n n C5 C20 STU doub 371 n y C5 C4 STU sing 372 n y C20 C1 STU sing 373 n y C20 N3 STU sing 374 n y C1 C2 STU doub 375 n y C1 H1 STU sing 376 n n C2 C3 STU sing 377 n y C2 H2 STU sing 378 n n C3 C4 STU doub 379 n y C3 H3 STU sing 380 n n C4 H4 STU sing 381 n n O6 C27 STU sing 382 n n C27 H271 STU sing 383 n n C27 H272 STU sing 384 n n C27 H273 STU sing 385 n n N4 C28 STU sing 386 n n N4 HN4 STU sing 387 n n C28 H281 STU sing 388 n n C28 H282 STU sing 389 n n C28 H283 STU sing 390 n n # _atom_sites.entry_id 1QPD _atom_sites.fract_transf_matrix[1][1] 0.023697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 901 SO4 SO4 . C 3 STU A 1 902 1 STU STU . D 4 HOH A 1 1 1 HOH TIP . D 4 HOH A 2 2 2 HOH TIP . D 4 HOH A 3 3 3 HOH TIP . D 4 HOH A 4 4 4 HOH TIP . D 4 HOH A 5 5 5 HOH TIP . D 4 HOH A 6 6 6 HOH TIP . D 4 HOH A 7 7 7 HOH TIP . D 4 HOH A 8 8 8 HOH TIP . D 4 HOH A 9 9 9 HOH TIP . D 4 HOH A 10 10 10 HOH TIP . D 4 HOH A 11 11 11 HOH TIP . D 4 HOH A 12 12 12 HOH TIP . D 4 HOH A 13 13 13 HOH TIP . D 4 HOH A 14 14 14 HOH TIP . D 4 HOH A 15 15 15 HOH TIP . D 4 HOH A 16 16 16 HOH TIP . D 4 HOH A 17 17 17 HOH TIP . D 4 HOH A 18 18 18 HOH TIP . D 4 HOH A 19 19 19 HOH TIP . D 4 HOH A 20 20 20 HOH TIP . D 4 HOH A 21 21 21 HOH TIP . D 4 HOH A 22 22 22 HOH TIP . D 4 HOH A 23 23 23 HOH TIP . D 4 HOH A 24 24 24 HOH TIP . D 4 HOH A 25 25 25 HOH TIP . D 4 HOH A 26 26 26 HOH TIP . D 4 HOH A 27 27 27 HOH TIP . D 4 HOH A 28 28 28 HOH TIP . D 4 HOH A 29 29 29 HOH TIP . D 4 HOH A 30 30 30 HOH TIP . D 4 HOH A 31 31 31 HOH TIP . D 4 HOH A 32 32 32 HOH TIP . D 4 HOH A 33 33 33 HOH TIP . D 4 HOH A 34 34 34 HOH TIP . D 4 HOH A 35 35 35 HOH TIP . D 4 HOH A 36 36 36 HOH TIP . D 4 HOH A 37 37 37 HOH TIP . D 4 HOH A 38 38 38 HOH TIP . D 4 HOH A 39 39 39 HOH TIP . D 4 HOH A 40 40 40 HOH TIP . D 4 HOH A 41 41 41 HOH TIP . D 4 HOH A 42 42 42 HOH TIP . D 4 HOH A 43 43 43 HOH TIP . D 4 HOH A 44 44 44 HOH TIP . D 4 HOH A 45 45 45 HOH TIP . D 4 HOH A 46 46 46 HOH TIP . D 4 HOH A 47 47 47 HOH TIP . D 4 HOH A 48 48 48 HOH TIP . D 4 HOH A 49 49 49 HOH TIP . D 4 HOH A 50 50 50 HOH TIP . D 4 HOH A 51 51 51 HOH TIP . D 4 HOH A 52 52 52 HOH TIP . D 4 HOH A 53 53 53 HOH TIP . D 4 HOH A 54 54 54 HOH TIP . D 4 HOH A 55 55 55 HOH TIP . D 4 HOH A 56 56 56 HOH TIP . D 4 HOH A 57 57 57 HOH TIP . D 4 HOH A 58 58 58 HOH TIP . D 4 HOH A 59 59 59 HOH TIP . D 4 HOH A 60 60 60 HOH TIP . D 4 HOH A 61 61 61 HOH TIP . D 4 HOH A 62 62 62 HOH TIP . D 4 HOH A 63 63 63 HOH TIP . D 4 HOH A 64 64 64 HOH TIP . D 4 HOH A 65 65 65 HOH TIP . D 4 HOH A 66 66 66 HOH TIP . D 4 HOH A 67 67 67 HOH TIP . D 4 HOH A 68 68 68 HOH TIP . D 4 HOH A 69 69 69 HOH TIP . D 4 HOH A 70 70 70 HOH TIP . D 4 HOH A 71 71 71 HOH TIP . D 4 HOH A 72 72 72 HOH TIP . D 4 HOH A 73 73 73 HOH TIP . D 4 HOH A 74 74 74 HOH TIP . D 4 HOH A 75 75 75 HOH TIP . D 4 HOH A 76 76 76 HOH TIP . D 4 HOH A 77 77 77 HOH TIP . D 4 HOH A 78 78 78 HOH TIP . D 4 HOH A 79 79 79 HOH TIP . D 4 HOH A 80 80 80 HOH TIP . D 4 HOH A 81 81 81 HOH TIP . D 4 HOH A 82 82 82 HOH TIP . D 4 HOH A 83 83 83 HOH TIP . D 4 HOH A 84 84 84 HOH TIP . D 4 HOH A 85 85 85 HOH TIP . D 4 HOH A 86 86 86 HOH TIP . D 4 HOH A 87 87 87 HOH TIP . D 4 HOH A 88 88 88 HOH TIP . D 4 HOH A 89 89 89 HOH TIP . D 4 HOH A 90 90 90 HOH TIP . D 4 HOH A 91 91 91 HOH TIP . D 4 HOH A 92 92 92 HOH TIP . D 4 HOH A 93 93 93 HOH TIP . D 4 HOH A 94 94 94 HOH TIP . D 4 HOH A 95 95 95 HOH TIP . D 4 HOH A 96 96 96 HOH TIP . D 4 HOH A 97 97 97 HOH TIP . D 4 HOH A 98 98 98 HOH TIP . D 4 HOH A 99 99 99 HOH TIP . D 4 HOH A 100 100 100 HOH TIP . D 4 HOH A 101 101 101 HOH TIP . D 4 HOH A 102 102 102 HOH TIP . D 4 HOH A 103 103 103 HOH TIP . D 4 HOH A 104 104 104 HOH TIP . D 4 HOH A 105 105 105 HOH TIP . D 4 HOH A 106 106 106 HOH TIP . D 4 HOH A 107 107 107 HOH TIP . D 4 HOH A 108 108 108 HOH TIP . D 4 HOH A 109 109 109 HOH TIP . D 4 HOH A 110 110 110 HOH TIP . D 4 HOH A 111 111 111 HOH TIP . D 4 HOH A 112 112 112 HOH TIP . D 4 HOH A 113 113 113 HOH TIP . D 4 HOH A 114 114 114 HOH TIP . D 4 HOH A 115 115 115 HOH TIP . D 4 HOH A 116 116 116 HOH TIP . D 4 HOH A 117 117 117 HOH TIP . D 4 HOH A 118 118 118 HOH TIP . D 4 HOH A 119 119 119 HOH TIP . D 4 HOH A 120 120 120 HOH TIP . D 4 HOH A 121 121 121 HOH TIP . D 4 HOH A 122 122 122 HOH TIP . D 4 HOH A 123 123 123 HOH TIP . D 4 HOH A 124 124 124 HOH TIP . D 4 HOH A 125 125 125 HOH TIP . D 4 HOH A 126 126 126 HOH TIP . D 4 HOH A 127 127 127 HOH TIP . D 4 HOH A 128 128 128 HOH TIP . D 4 HOH A 129 129 129 HOH TIP . D 4 HOH A 130 130 130 HOH TIP . D 4 HOH A 131 131 131 HOH TIP . D 4 HOH A 132 132 132 HOH TIP . D 4 HOH A 133 133 133 HOH TIP . D 4 HOH A 134 134 134 HOH TIP . D 4 HOH A 135 135 135 HOH TIP . D 4 HOH A 136 136 136 HOH TIP . D 4 HOH A 137 137 137 HOH TIP . D 4 HOH A 138 138 138 HOH TIP . D 4 HOH A 139 139 139 HOH TIP . D 4 HOH A 140 140 140 HOH TIP . D 4 HOH A 141 141 141 HOH TIP . D 4 HOH A 142 142 142 HOH TIP . D 4 HOH A 143 143 143 HOH TIP . D 4 HOH A 144 144 144 HOH TIP . D 4 HOH A 145 145 145 HOH TIP . D 4 HOH A 146 146 146 HOH TIP . D 4 HOH A 147 147 147 HOH TIP . D 4 HOH A 148 148 148 HOH TIP . D 4 HOH A 149 149 149 HOH TIP . D 4 HOH A 150 150 150 HOH TIP . D 4 HOH A 151 151 151 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . C 3 26.535 40.495 85.876 1 11.24 ? O4 STU 902 A 1 HETATM 2 C C25 STU . . . C 3 27.502 40.339 84.84 1 9.72 ? C25 STU 902 A 1 HETATM 3 C C24 STU . . . C 3 27.822 41.685 84.136 1 10.96 ? C24 STU 902 A 1 HETATM 4 C C23 STU . . . C 3 26.945 42.806 84.728 1 12.11 ? C23 STU 902 A 1 HETATM 5 C C22 STU . . . C 3 25.446 42.387 84.626 1 12.2 ? C22 STU 902 A 1 HETATM 6 C C21 STU . . . C 3 25.305 41.21 85.651 1 11.74 ? C21 STU 902 A 1 HETATM 7 C C26 STU . . . C 3 24.993 41.81 86.999 1 10.18 ? C26 STU 902 A 1 HETATM 8 N N2 STU . . . C 3 24.278 40.197 85.248 1 8.64 ? N2 STU 902 A 1 HETATM 9 C C18 STU . . . C 3 24.601 39.145 84.402 1 7.31 ? C18 STU 902 A 1 HETATM 10 C C19 STU . . . C 3 25.764 38.773 83.853 1 8.67 ? C19 STU 902 A 1 HETATM 11 C C6 STU . . . C 3 25.858 37.605 82.996 1 6.68 ? C6 STU 902 A 1 HETATM 12 C C7 STU . . . C 3 24.603 36.902 82.801 1 5.78 ? C7 STU 902 A 1 HETATM 13 C C10 STU . . . C 3 23.475 37.277 83.341 1 5.78 ? C10 STU 902 A 1 HETATM 14 C C11 STU . . . C 3 23.38 38.427 84.169 1 7.21 ? C11 STU 902 A 1 HETATM 15 C C12 STU . . . C 3 22.339 39.076 84.853 1 8.03 ? C12 STU 902 A 1 HETATM 16 C C17 STU . . . C 3 22.898 40.224 85.534 1 7.47 ? C17 STU 902 A 1 HETATM 17 C C16 STU . . . C 3 22.083 41.046 86.257 1 10.26 ? C16 STU 902 A 1 HETATM 18 C C15 STU . . . C 3 20.716 40.769 86.371 1 7.2 ? C15 STU 902 A 1 HETATM 19 C C14 STU . . . C 3 20.171 39.651 85.714 1 8.16 ? C14 STU 902 A 1 HETATM 20 C C13 STU . . . C 3 20.985 38.816 84.968 1 7.93 ? C13 STU 902 A 1 HETATM 21 C C9 STU . . . C 3 22.33 36.321 82.954 1 6.61 ? C9 STU 902 A 1 HETATM 22 N N1 STU . . . C 3 23.082 35.431 82.089 1 7.37 ? N1 STU 902 A 1 HETATM 23 C C8 STU . . . C 3 24.394 35.657 81.967 1 6.69 ? C8 STU 902 A 1 HETATM 24 O O5 STU . . . C 3 25.212 35.024 81.341 1 9.35 ? O5 STU 902 A 1 HETATM 25 C C5 STU . . . C 3 27.22 37.488 82.579 1 8.25 ? C5 STU 902 A 1 HETATM 26 C C20 STU . . . C 3 27.911 38.565 83.172 1 8.48 ? C20 STU 902 A 1 HETATM 27 C C1 STU . . . C 3 29.291 38.755 82.956 1 10.31 ? C1 STU 902 A 1 HETATM 28 C C2 STU . . . C 3 29.958 37.837 82.165 1 7.16 ? C2 STU 902 A 1 HETATM 29 C C3 STU . . . C 3 29.269 36.771 81.567 1 6.36 ? C3 STU 902 A 1 HETATM 30 C C4 STU . . . C 3 27.892 36.595 81.781 1 6.7 ? C4 STU 902 A 1 HETATM 31 N N3 STU . . . C 3 27.065 39.299 83.909 1 11.36 ? N3 STU 902 A 1 HETATM 32 O O6 STU . . . C 3 25.269 41.898 83.285 1 15.68 ? O6 STU 902 A 1 HETATM 33 C C27 STU . . . C 3 24.06 42.366 82.717 1 16.9 ? C27 STU 902 A 1 HETATM 34 N N4 STU . . . C 3 27.204 44.135 83.925 1 14.54 ? N4 STU 902 A 1 HETATM 35 C C28 STU . . . C 3 28.684 44.317 83.715 1 18.14 ? C28 STU 902 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #