data_1QPF # _model_server_result.job_id lNeSA00IcmrCJwOADxNU2A _model_server_result.datetime_utc '2024-11-24 16:38:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":109}' # _entry.id 1QPF # _exptl.entry_id 1QPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QPF _cell.length_a 74.26 _cell.length_b 74.26 _cell.length_c 236.45 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 PQS dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,C,D,F 2 1,2 B,E,G 2 3,4 A,C,D,F 3 1,2 B,E,G 4 1,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 37.13 64.311046 197.041667 3 'crystal symmetry operation' 5_564 y,-x+y+1,z-1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 -37.13 64.311046 -39.408333 4 'crystal symmetry operation' 8_566 x-y,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 -37.13 64.311046 236.45 5 'crystal symmetry operation' 12_566 x,x-y+1,-z+7/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -37.13 64.311046 275.858333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 220 n n C5 C4 B7G sing 221 n n C5 C6 B7G sing 222 n n C5 H5 B7G sing 223 n n O5 C1 B7G sing 224 n n C1 C2 B7G sing 225 n n C1 O1 B7G sing 226 n n C1 H1 B7G sing 227 n n C2 C3 B7G sing 228 n n C2 O2 B7G sing 229 n n C2 H2 B7G sing 230 n n C3 C4 B7G sing 231 n n C3 O3 B7G sing 232 n n C3 H3 B7G sing 233 n n C4 O4 B7G sing 234 n n C4 H4 B7G sing 235 n n C6 O6 B7G sing 236 n n C6 H61 B7G sing 237 n n C6 H62 B7G sing 238 n n O1 C7 B7G sing 239 n n C7 C8 B7G sing 240 n n C7 H71 B7G sing 241 n n C7 H72 B7G sing 242 n n C8 C9 B7G sing 243 n n C8 H81 B7G sing 244 n n C8 H82 B7G sing 245 n n C9 C10 B7G sing 246 n n C9 H91 B7G sing 247 n n C9 H92 B7G sing 248 n n C10 C11 B7G sing 249 n n C10 H101 B7G sing 250 n n C10 H102 B7G sing 251 n n C11 C12 B7G sing 252 n n C11 H111 B7G sing 253 n n C11 H112 B7G sing 254 n n C12 C13 B7G sing 255 n n C12 H121 B7G sing 256 n n C12 H122 B7G sing 257 n n O2 HO2 B7G sing 258 n n O3 HO3 B7G sing 259 n n O4 HO4 B7G sing 260 n n O6 HO6 B7G sing 261 n n C13 H131 B7G sing 262 n n C13 H132 B7G sing 263 n n C13 H133 B7G sing 264 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1QPF _atom_sites.fract_transf_matrix[1][1] 0.013466 _atom_sites.fract_transf_matrix[1][2] 0.007775 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 858 A 1 108 108 858 858 . D 3 B7G A 1 109 109 B7G B7G . E 2 858 D 1 308 308 858 858 . F 4 HOH A 1 401 401 HOH HOH . F 4 HOH A 2 402 402 HOH HOH . F 4 HOH A 3 403 403 HOH HOH . F 4 HOH A 4 404 404 HOH HOH . F 4 HOH A 5 410 410 HOH HOH . F 4 HOH A 6 411 411 HOH HOH . F 4 HOH A 7 412 412 HOH HOH . F 4 HOH A 8 413 413 HOH HOH . F 4 HOH A 9 414 414 HOH HOH . F 4 HOH A 10 415 415 HOH HOH . F 4 HOH A 11 416 416 HOH HOH . F 4 HOH A 12 417 417 HOH HOH . F 4 HOH A 13 418 418 HOH HOH . F 4 HOH A 14 421 421 HOH HOH . F 4 HOH A 15 425 425 HOH HOH . F 4 HOH A 16 426 426 HOH HOH . F 4 HOH A 17 428 428 HOH HOH . F 4 HOH A 18 430 430 HOH HOH . F 4 HOH A 19 431 431 HOH HOH . F 4 HOH A 20 432 432 HOH HOH . F 4 HOH A 21 437 437 HOH HOH . F 4 HOH A 22 438 438 HOH HOH . F 4 HOH A 23 439 439 HOH HOH . F 4 HOH A 24 441 441 HOH HOH . F 4 HOH A 25 442 442 HOH HOH . F 4 HOH A 26 445 445 HOH HOH . F 4 HOH A 27 449 449 HOH HOH . F 4 HOH A 28 451 451 HOH HOH . F 4 HOH A 29 452 452 HOH HOH . F 4 HOH A 30 454 454 HOH HOH . F 4 HOH A 31 455 455 HOH HOH . G 4 HOH D 1 405 405 HOH HOH . G 4 HOH D 2 406 406 HOH HOH . G 4 HOH D 3 407 407 HOH HOH . G 4 HOH D 4 408 408 HOH HOH . G 4 HOH D 5 409 409 HOH HOH . G 4 HOH D 6 419 419 HOH HOH . G 4 HOH D 7 420 420 HOH HOH . G 4 HOH D 8 422 422 HOH HOH . G 4 HOH D 9 423 423 HOH HOH . G 4 HOH D 10 424 424 HOH HOH . G 4 HOH D 11 427 427 HOH HOH . G 4 HOH D 12 429 429 HOH HOH . G 4 HOH D 13 433 433 HOH HOH . G 4 HOH D 14 434 434 HOH HOH . G 4 HOH D 15 435 435 HOH HOH . G 4 HOH D 16 436 436 HOH HOH . G 4 HOH D 17 440 440 HOH HOH . G 4 HOH D 18 443 443 HOH HOH . G 4 HOH D 19 444 444 HOH HOH . G 4 HOH D 20 446 446 HOH HOH . G 4 HOH D 21 447 447 HOH HOH . G 4 HOH D 22 448 448 HOH HOH . G 4 HOH D 23 450 450 HOH HOH . G 4 HOH D 24 453 453 HOH HOH . G 4 HOH D 25 456 456 HOH HOH . G 4 HOH D 26 457 457 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . D 3 -6.48 42.335 109.483 1 12.4 ? C5 B7G 109 A 1 HETATM 2 O O5 B7G . . . D 3 -6.238 42.141 108.077 1 12.4 ? O5 B7G 109 A 1 HETATM 3 C C1 B7G . . . D 3 -7.216 42.697 107.192 1 12.4 ? C1 B7G 109 A 1 HETATM 4 C C2 B7G . . . D 3 -8.619 42.127 107.483 1 12.4 ? C2 B7G 109 A 1 HETATM 5 C C3 B7G . . . D 3 -8.953 42.531 108.919 1 12.4 ? C3 B7G 109 A 1 HETATM 6 C C4 B7G . . . D 3 -7.94 41.902 109.861 1 12.4 ? C4 B7G 109 A 1 HETATM 7 C C6 B7G . . . D 3 -5.416 41.482 110.214 1 12.4 ? C6 B7G 109 A 1 HETATM 8 O O1 B7G . . . D 3 -6.798 42.506 105.814 1 12.4 ? O1 B7G 109 A 1 HETATM 9 C C7 B7G . . . D 3 -5.498 43.052 105.553 1 12.4 ? C7 B7G 109 A 1 HETATM 10 C C8 B7G . . . D 3 -4.969 42.734 104.14 1 12.4 ? C8 B7G 109 A 1 HETATM 11 C C9 B7G . . . D 3 -3.465 43.052 103.932 1 12.4 ? C9 B7G 109 A 1 HETATM 12 C C10 B7G . . . D 3 -2.404 42.159 104.625 1 12.4 ? C10 B7G 109 A 1 HETATM 13 C C11 B7G . . . D 3 -2.147 40.791 103.956 1 12.4 ? C11 B7G 109 A 1 HETATM 14 C C12 B7G . . . D 3 -1.276 39.817 104.781 1 12.4 ? C12 B7G 109 A 1 HETATM 15 O O2 B7G . . . D 3 -9.541 42.623 106.54 1 12.4 ? O2 B7G 109 A 1 HETATM 16 O O3 B7G . . . D 3 -10.252 42.167 109.332 1 12.4 ? O3 B7G 109 A 1 HETATM 17 O O4 B7G . . . D 3 -8.258 42.306 111.183 1 12.4 ? O4 B7G 109 A 1 HETATM 18 O O6 B7G . . . D 3 -5.028 40.338 109.429 1 12.4 ? O6 B7G 109 A 1 HETATM 19 C C13 B7G . . . D 3 -0.913 38.521 104.023 1 12.4 ? C13 B7G 109 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 508 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 19 #