data_1QPG # _model_server_result.job_id d79s09WERuNO3BBC_my7nw _model_server_result.datetime_utc '2025-01-02 22:34:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":450}' # _entry.id 1QPG # _exptl.entry_id 1QPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "MAGNESIUM-5'-ADENYLY-IMIDO-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.2 _cell.angle_gamma 90 _cell.entry_id 1QPG _cell.length_a 96 _cell.length_b 70.1 _cell.length_c 82.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 Mg N6 O12 P3' _chem_comp.formula_weight 529.493 _chem_comp.id MAP _chem_comp.mon_nstd_flag . _chem_comp.name "MAGNESIUM-5'-ADENYLY-IMIDO-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MAP doub 235 n n PG O2G MAP sing 236 n n PG O3G MAP sing 237 n n PG N3B MAP sing 238 n n O2G HOG2 MAP sing 239 n n O3G HOG3 MAP sing 240 n n PB O1B MAP doub 241 n n PB O2B MAP sing 242 n n PB N3B MAP sing 243 n n PB O3A MAP sing 244 n n O2B HOB2 MAP sing 245 n n N3B HNB1 MAP sing 246 n n PA O1A MAP doub 247 n n PA O2A MAP sing 248 n n PA O3A MAP sing 249 n n PA O5' MAP sing 250 n n O2A MG MAP sing 251 n n O5' C5' MAP sing 252 n n C5' C4' MAP sing 253 n n C5' "H5'1" MAP sing 254 n n C5' "H5'2" MAP sing 255 n n C4' O4' MAP sing 256 n n C4' C3' MAP sing 257 n n C4' H4' MAP sing 258 n n O4' C1' MAP sing 259 n n C3' O3' MAP sing 260 n n C3' C2' MAP sing 261 n n C3' H3' MAP sing 262 n n O3' HO3' MAP sing 263 n n C2' O2' MAP sing 264 n n C2' C1' MAP sing 265 n n C2' H2' MAP sing 266 n n O2' HO2' MAP sing 267 n n C1' N9 MAP sing 268 n n C1' H1' MAP sing 269 n n N9 C8 MAP sing 270 n y N9 C4 MAP sing 271 n y C8 N7 MAP doub 272 n y C8 H8 MAP sing 273 n n N7 C5 MAP sing 274 n y C5 C6 MAP sing 275 n y C5 C4 MAP doub 276 n y C6 N6 MAP sing 277 n n C6 N1 MAP doub 278 n y N6 HN61 MAP sing 279 n n N6 HN62 MAP sing 280 n n N1 C2 MAP sing 281 n y C2 N3 MAP doub 282 n y C2 H2 MAP sing 283 n n N3 C4 MAP sing 284 n y # _atom_sites.entry_id 1QPG _atom_sites.fract_transf_matrix[1][1] 0.010417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MAP A 1 450 450 MAP MAP . C 3 3PG A 1 451 451 3PG 3PG . D 4 HOH A 1 500 500 HOH HOH . D 4 HOH A 2 501 501 HOH HOH . D 4 HOH A 3 502 502 HOH HOH . D 4 HOH A 4 503 503 HOH HOH . D 4 HOH A 5 504 504 HOH HOH . D 4 HOH A 6 505 505 HOH HOH . D 4 HOH A 7 506 506 HOH HOH . D 4 HOH A 8 507 507 HOH HOH . D 4 HOH A 9 508 508 HOH HOH . D 4 HOH A 10 509 509 HOH HOH . D 4 HOH A 11 510 510 HOH HOH . D 4 HOH A 12 511 511 HOH HOH . D 4 HOH A 13 512 512 HOH HOH . D 4 HOH A 14 513 513 HOH HOH . D 4 HOH A 15 514 514 HOH HOH . D 4 HOH A 16 515 515 HOH HOH . D 4 HOH A 17 516 516 HOH HOH . D 4 HOH A 18 517 517 HOH HOH . D 4 HOH A 19 518 518 HOH HOH . D 4 HOH A 20 519 519 HOH HOH . D 4 HOH A 21 520 520 HOH HOH . D 4 HOH A 22 521 521 HOH HOH . D 4 HOH A 23 522 522 HOH HOH . D 4 HOH A 24 523 523 HOH HOH . D 4 HOH A 25 524 524 HOH HOH . D 4 HOH A 26 525 525 HOH HOH . D 4 HOH A 27 526 526 HOH HOH . D 4 HOH A 28 527 527 HOH HOH . D 4 HOH A 29 528 528 HOH HOH . D 4 HOH A 30 529 529 HOH HOH . D 4 HOH A 31 530 530 HOH HOH . D 4 HOH A 32 531 531 HOH HOH . D 4 HOH A 33 532 532 HOH HOH . D 4 HOH A 34 533 533 HOH HOH . D 4 HOH A 35 534 534 HOH HOH . D 4 HOH A 36 535 535 HOH HOH . D 4 HOH A 37 536 536 HOH HOH . D 4 HOH A 38 537 537 HOH HOH . D 4 HOH A 39 538 538 HOH HOH . D 4 HOH A 40 539 539 HOH HOH . D 4 HOH A 41 540 540 HOH HOH . D 4 HOH A 42 541 541 HOH HOH . D 4 HOH A 43 542 542 HOH HOH . D 4 HOH A 44 543 543 HOH HOH . D 4 HOH A 45 544 544 HOH HOH . D 4 HOH A 46 545 545 HOH HOH . D 4 HOH A 47 546 546 HOH HOH . D 4 HOH A 48 547 547 HOH HOH . D 4 HOH A 49 548 548 HOH HOH . D 4 HOH A 50 549 549 HOH HOH . D 4 HOH A 51 550 550 HOH HOH . D 4 HOH A 52 551 551 HOH HOH . D 4 HOH A 53 552 552 HOH HOH . D 4 HOH A 54 553 553 HOH HOH . D 4 HOH A 55 554 554 HOH HOH . D 4 HOH A 56 555 555 HOH HOH . D 4 HOH A 57 556 556 HOH HOH . D 4 HOH A 58 557 557 HOH HOH . D 4 HOH A 59 558 558 HOH HOH . D 4 HOH A 60 559 559 HOH HOH . D 4 HOH A 61 560 560 HOH HOH . D 4 HOH A 62 561 561 HOH HOH . D 4 HOH A 63 562 562 HOH HOH . D 4 HOH A 64 563 563 HOH HOH . D 4 HOH A 65 564 564 HOH HOH . D 4 HOH A 66 565 565 HOH HOH . D 4 HOH A 67 566 566 HOH HOH . D 4 HOH A 68 567 567 HOH HOH . D 4 HOH A 69 568 568 HOH HOH . D 4 HOH A 70 569 569 HOH HOH . D 4 HOH A 71 570 570 HOH HOH . D 4 HOH A 72 571 571 HOH HOH . D 4 HOH A 73 572 572 HOH HOH . D 4 HOH A 74 573 573 HOH HOH . D 4 HOH A 75 574 574 HOH HOH . D 4 HOH A 76 575 575 HOH HOH . D 4 HOH A 77 576 576 HOH HOH . D 4 HOH A 78 577 577 HOH HOH . D 4 HOH A 79 578 578 HOH HOH . D 4 HOH A 80 579 579 HOH HOH . D 4 HOH A 81 580 580 HOH HOH . D 4 HOH A 82 581 581 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MAP . . . B 2 30.659 15.049 22.868 1 46.78 ? PG MAP 450 A 1 HETATM 2 O O1G MAP . . . B 2 29.468 15.145 23.764 1 44.5 ? O1G MAP 450 A 1 HETATM 3 O O2G MAP . . . B 2 30.356 15.539 21.485 1 53.17 ? O2G MAP 450 A 1 HETATM 4 O O3G MAP . . . B 2 31.154 13.639 22.837 1 53.12 ? O3G MAP 450 A 1 HETATM 5 P PB MAP . . . B 2 32.034 17.853 23.803 1 42.03 ? PB MAP 450 A 1 HETATM 6 O O1B MAP . . . B 2 30.771 18.327 23.149 1 43.62 ? O1B MAP 450 A 1 HETATM 7 O O2B MAP . . . B 2 33.184 18.528 23.135 1 31.53 ? O2B MAP 450 A 1 HETATM 8 N N3B MAP . . . B 2 32.105 16.108 23.444 1 44.84 ? N3B MAP 450 A 1 HETATM 9 P PA MAP . . . B 2 30.996 17.593 26.454 1 41.06 ? PA MAP 450 A 1 HETATM 10 O O1A MAP . . . B 2 31.266 16.456 27.352 1 35.52 ? O1A MAP 450 A 1 HETATM 11 O O2A MAP . . . B 2 29.538 17.681 26.185 1 46.75 ? O2A MAP 450 A 1 HETATM 12 O O3A MAP . . . B 2 31.992 17.955 25.328 1 36.54 ? O3A MAP 450 A 1 HETATM 13 O O5' MAP . . . B 2 31.117 18.821 27.479 1 42.69 ? O5' MAP 450 A 1 HETATM 14 C C5' MAP . . . B 2 31.472 20.186 27.263 1 38.99 ? C5' MAP 450 A 1 HETATM 15 C C4' MAP . . . B 2 30.762 20.916 28.404 1 43.5 ? C4' MAP 450 A 1 HETATM 16 O O4' MAP . . . B 2 31.399 20.459 29.603 1 46.59 ? O4' MAP 450 A 1 HETATM 17 C C3' MAP . . . B 2 30.914 22.424 28.454 1 54.81 ? C3' MAP 450 A 1 HETATM 18 O O3' MAP . . . B 2 30.048 23.083 29.445 1 64.62 ? O3' MAP 450 A 1 HETATM 19 C C2' MAP . . . B 2 32.337 22.453 29.01 1 53.56 ? C2' MAP 450 A 1 HETATM 20 O O2' MAP . . . B 2 32.637 23.828 29.312 1 63.05 ? O2' MAP 450 A 1 HETATM 21 C C1' MAP . . . B 2 31.924 21.651 30.226 1 47.23 ? C1' MAP 450 A 1 HETATM 22 N N9 MAP . . . B 2 33.079 21.407 31.151 1 45.16 ? N9 MAP 450 A 1 HETATM 23 C C8 MAP . . . B 2 34.442 21.482 30.937 1 37.43 ? C8 MAP 450 A 1 HETATM 24 N N7 MAP . . . B 2 35.145 21.515 32.031 1 32.32 ? N7 MAP 450 A 1 HETATM 25 C C5 MAP . . . B 2 34.184 21.448 33.03 1 34.67 ? C5 MAP 450 A 1 HETATM 26 C C6 MAP . . . B 2 34.282 21.485 34.428 1 37.46 ? C6 MAP 450 A 1 HETATM 27 N N6 MAP . . . B 2 35.445 21.66 35.055 1 36.26 ? N6 MAP 450 A 1 HETATM 28 N N1 MAP . . . B 2 33.145 21.366 35.133 1 41.75 ? N1 MAP 450 A 1 HETATM 29 C C2 MAP . . . B 2 31.985 21.28 34.469 1 43.89 ? C2 MAP 450 A 1 HETATM 30 N N3 MAP . . . B 2 31.763 21.268 33.164 1 39.31 ? N3 MAP 450 A 1 HETATM 31 C C4 MAP . . . B 2 32.932 21.351 32.504 1 32.84 ? C4 MAP 450 A 1 HETATM 32 MG MG MAP . . . B 2 28.734 17.403 24.165 1 40.47 ? MG MAP 450 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #