data_1QPU
#
_model_server_result.job_id            EeBI4R3MqYgaQ9nhBw4SxQ 
_model_server_result.datetime_utc      '2025-02-18 23:50:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qpu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":107}' 
#
_entry.id    1QPU 
#
_exptl.entry_id    1QPU 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1QPU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QPU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SD MET 7 A MET 7 1_555 B FE HEM . A HEM 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc2 A NE2 HIS 102 A HIS 102 1_555 B FE HEM . A HEM 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     1QPU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           HEM 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      107 
_pdbx_nonpoly_scheme.auth_seq_num     107 
_pdbx_nonpoly_scheme.pdb_mon_id       HEM 
_pdbx_nonpoly_scheme.auth_mon_id      HEM 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 2.314 -8.973 8.107 1 1 ? CHA HEM 107 A 1 
HETATM 2 C CHB HEM . . . B 2 -0.757 -6.058 5.779 1 1 ? CHB HEM 107 A 1 
HETATM 3 C CHC HEM . . . B 2 2.335 -6.11 1.965 1 1 ? CHC HEM 107 A 1 
HETATM 4 C CHD HEM . . . B 2 5.465 -8.968 4.422 1 1 ? CHD HEM 107 A 1 
HETATM 5 C C1A HEM . . . B 2 1.226 -8.25 7.755 1 1 ? C1A HEM 107 A 1 
HETATM 6 C C2A HEM . . . B 2 0.107 -8.117 8.63 1 1 ? C2A HEM 107 A 1 
HETATM 7 C C3A HEM . . . B 2 -0.757 -7.265 8.011 1 1 ? C3A HEM 107 A 1 
HETATM 8 C C4A HEM . . . B 2 -0.191 -6.899 6.728 1 1 ? C4A HEM 107 A 1 
HETATM 9 C CMA HEM . . . B 2 -2.005 -6.837 8.669 1 1 ? CMA HEM 107 A 1 
HETATM 10 C CAA HEM . . . B 2 0.025 -8.751 10.003 1 1 ? CAA HEM 107 A 1 
HETATM 11 C CBA HEM . . . B 2 -0.643 -8.068 11.217 1 1 ? CBA HEM 107 A 1 
HETATM 12 C CGA HEM . . . B 2 -0.866 -9.024 12.375 1 1 ? CGA HEM 107 A 1 
HETATM 13 O O1A HEM . . . B 2 -0.739 -8.55 13.523 1 1 ? O1A HEM 107 A 1 
HETATM 14 O O2A HEM . . . B 2 -1.21 -10.192 12.089 1 1 ? O2A HEM 107 A 1 
HETATM 15 C C1B HEM . . . B 2 -0.156 -5.832 4.532 1 1 ? C1B HEM 107 A 1 
HETATM 16 C C2B HEM . . . B 2 -0.669 -4.922 3.536 1 1 ? C2B HEM 107 A 1 
HETATM 17 C C3B HEM . . . B 2 0.206 -4.945 2.47 1 1 ? C3B HEM 107 A 1 
HETATM 18 C C4B HEM . . . B 2 1.26 -5.86 2.806 1 1 ? C4B HEM 107 A 1 
HETATM 19 C CMB HEM . . . B 2 -1.853 -4.028 3.762 1 1 ? CMB HEM 107 A 1 
HETATM 20 C CAB HEM . . . B 2 0.182 -4.178 1.173 1 1 ? CAB HEM 107 A 1 
HETATM 21 C CBB HEM . . . B 2 -1.055 -3.366 0.836 1 1 ? CBB HEM 107 A 1 
HETATM 22 C C1C HEM . . . B 2 3.427 -6.904 2.311 1 1 ? C1C HEM 107 A 1 
HETATM 23 C C2C HEM . . . B 2 4.529 -7.184 1.431 1 1 ? C2C HEM 107 A 1 
HETATM 24 C C3C HEM . . . B 2 5.431 -7.971 2.114 1 1 ? C3C HEM 107 A 1 
HETATM 25 C C4C HEM . . . B 2 4.86 -8.208 3.42 1 1 ? C4C HEM 107 A 1 
HETATM 26 C CMC HEM . . . B 2 4.516 -6.824 -0.022 1 1 ? CMC HEM 107 A 1 
HETATM 27 C CAC HEM . . . B 2 6.755 -8.516 1.615 1 1 ? CAC HEM 107 A 1 
HETATM 28 C CBC HEM . . . B 2 7.42 -7.741 0.48 1 1 ? CBC HEM 107 A 1 
HETATM 29 C C1D HEM . . . B 2 4.87 -9.139 5.664 1 1 ? C1D HEM 107 A 1 
HETATM 30 C C2D HEM . . . B 2 5.437 -9.871 6.774 1 1 ? C2D HEM 107 A 1 
HETATM 31 C C3D HEM . . . B 2 4.524 -9.875 7.778 1 1 ? C3D HEM 107 A 1 
HETATM 32 C C4D HEM . . . B 2 3.412 -9.117 7.329 1 1 ? C4D HEM 107 A 1 
HETATM 33 C CMD HEM . . . B 2 6.738 -10.558 6.92 1 1 ? CMD HEM 107 A 1 
HETATM 34 C CAD HEM . . . B 2 4.537 -10.691 9.042 1 1 ? CAD HEM 107 A 1 
HETATM 35 C CBD HEM . . . B 2 5.019 -9.893 10.237 1 1 ? CBD HEM 107 A 1 
HETATM 36 C CGD HEM . . . B 2 4.08 -10.031 11.412 1 1 ? CGD HEM 107 A 1 
HETATM 37 O O1D HEM . . . B 2 3.575 -8.969 11.83 1 1 ? O1D HEM 107 A 1 
HETATM 38 O O2D HEM . . . B 2 3.845 -11.19 11.812 1 1 ? O2D HEM 107 A 1 
HETATM 39 N NA HEM . . . B 2 1.007 -7.536 6.637 1 1 ? NA HEM 107 A 1 
HETATM 40 N NB HEM . . . B 2 1.002 -6.365 4.033 1 1 ? NB HEM 107 A 1 
HETATM 41 N NC HEM . . . B 2 3.649 -7.553 3.467 1 1 ? NC HEM 107 A 1 
HETATM 42 N ND HEM . . . B 2 3.652 -8.675 6.086 1 1 ? ND HEM 107 A 1 
HETATM 43 FE FE HEM . . . B 2 2.258 -7.553 5.013 1 1 ? FE HEM 107 A 1 
HETATM 44 H HHB HEM . . . B 2 -1.686 -5.569 6.019 1 1 ? HHB HEM 107 A 1 
HETATM 45 H HHC HEM . . . B 2 2.316 -5.623 1.005 1 1 ? HHC HEM 107 A 1 
HETATM 46 H HHD HEM . . . B 2 6.418 -9.439 4.239 1 1 ? HHD HEM 107 A 1 
HETATM 47 H HAB HEM . . . B 2 0.456 -4.822 0.331 1 1 ? HAB HEM 107 A 1 
HETATM 48 H HAC HEM . . . B 2 7.464 -8.578 2.44 1 1 ? HAC HEM 107 A 1 
HETATM 49 H HHA HEM . . . B 2 2.334 -9.411 9.085 1 1 ? HHA HEM 107 A 1 
HETATM 50 H HMA1 HEM . . . B 2 -1.677 -6.14 9.44 1 1 ? HMA1 HEM 107 A 1 
HETATM 51 H HMA2 HEM . . . B 2 -2.746 -6.429 7.988 1 1 ? HMA2 HEM 107 A 1 
HETATM 52 H HMA3 HEM . . . B 2 -2.345 -7.759 9.139 1 1 ? HMA3 HEM 107 A 1 
HETATM 53 H HAA1 HEM . . . B 2 0.999 -8.495 10.306 1 1 ? HAA1 HEM 107 A 1 
HETATM 54 H HAA2 HEM . . . B 2 0.074 -9.856 9.977 1 1 ? HAA2 HEM 107 A 1 
HETATM 55 H HBA1 HEM . . . B 2 -1.591 -7.597 11.021 1 1 ? HBA1 HEM 107 A 1 
HETATM 56 H HBA2 HEM . . . B 2 0.034 -7.278 11.56 1 1 ? HBA2 HEM 107 A 1 
HETATM 57 H HMB1 HEM . . . B 2 -1.732 -3.646 4.768 1 1 ? HMB1 HEM 107 A 1 
HETATM 58 H HMB2 HEM . . . B 2 -1.898 -3.178 3.088 1 1 ? HMB2 HEM 107 A 1 
HETATM 59 H HMB3 HEM . . . B 2 -2.776 -4.598 3.706 1 1 ? HMB3 HEM 107 A 1 
HETATM 60 H HBB1 HEM . . . B 2 -1.958 -3.953 0.983 1 1 ? HBB1 HEM 107 A 1 
HETATM 61 H HBB2 HEM . . . B 2 -0.961 -3.086 -0.205 1 1 ? HBB2 HEM 107 A 1 
HETATM 62 H HMC1 HEM . . . B 2 4.603 -5.747 -0.139 1 1 ? HMC1 HEM 107 A 1 
HETATM 63 H HMC2 HEM . . . B 2 5.288 -7.325 -0.593 1 1 ? HMC2 HEM 107 A 1 
HETATM 64 H HMC3 HEM . . . B 2 3.54 -7.158 -0.366 1 1 ? HMC3 HEM 107 A 1 
HETATM 65 H HBC1 HEM . . . B 2 7.525 -6.692 0.758 1 1 ? HBC1 HEM 107 A 1 
HETATM 66 H HBC2 HEM . . . B 2 8.402 -8.17 0.276 1 1 ? HBC2 HEM 107 A 1 
HETATM 67 H HMD1 HEM . . . B 2 7.47 -9.817 7.227 1 1 ? HMD1 HEM 107 A 1 
HETATM 68 H HMD2 HEM . . . B 2 6.536 -11.273 7.724 1 1 ? HMD2 HEM 107 A 1 
HETATM 69 H HMD3 HEM . . . B 2 7.033 -11.061 6.01 1 1 ? HMD3 HEM 107 A 1 
HETATM 70 H HAD1 HEM . . . B 2 4.91 -11.691 9.02 1 1 ? HAD1 HEM 107 A 1 
HETATM 71 H HAD2 HEM . . . B 2 3.545 -11.02 9.192 1 1 ? HAD2 HEM 107 A 1 
HETATM 72 H HBD1 HEM . . . B 2 4.974 -8.851 9.953 1 1 ? HBD1 HEM 107 A 1 
HETATM 73 H HBD2 HEM . . . B 2 6.036 -10.179 10.508 1 1 ? HBD2 HEM 107 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           73 
#