data_1QQ3 # _model_server_result.job_id 0hFdtGHts1EQMboT8DVQQw _model_server_result.datetime_utc '2024-11-12 20:58:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":107}' # _entry.id 1QQ3 # _exptl.entry_id 1QQ3 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME B/C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QQ3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 98 A CYS 98 1_555 B CAB HEB . A HEB 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc1 A SD MET 7 A MET 7 1_555 B FE HEB . A HEB 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 A NE2 HIS 102 A HIS 102 1_555 B FE HEB . A HEB 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEB _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME B/C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEB sing 129 n n FE NB HEB sing 130 n n FE NC HEB sing 131 n n FE ND HEB sing 132 n n CHA C1A HEB doub 133 n n CHA C4D HEB sing 134 n n CHA HHA HEB sing 135 n n CHB C4A HEB doub 136 n n CHB C1B HEB sing 137 n n CHB HHB HEB sing 138 n n CHC C4B HEB doub 139 n n CHC C1C HEB sing 140 n n CHC HHC HEB sing 141 n n CHD C4C HEB sing 142 n n CHD C1D HEB doub 143 n n CHD HHD HEB sing 144 n n NA C1A HEB sing 145 n n NA C4A HEB sing 146 n n C1A C2A HEB sing 147 n n C2A C3A HEB doub 148 n n C2A CAA HEB sing 149 n n C3A C4A HEB sing 150 n n C3A CMA HEB sing 151 n n CMA HMA1 HEB sing 152 n n CMA HMA2 HEB sing 153 n n CMA HMA3 HEB sing 154 n n CAA CBA HEB sing 155 n n CAA HAA1 HEB sing 156 n n CAA HAA2 HEB sing 157 n n CBA CGA HEB sing 158 n n CBA HBA1 HEB sing 159 n n CBA HBA2 HEB sing 160 n n CGA O1A HEB doub 161 n n CGA O2A HEB sing 162 n n O2A H2A HEB sing 163 n n NB C1B HEB doub 164 n n NB C4B HEB sing 165 n n C1B C2B HEB sing 166 n n C2B C3B HEB doub 167 n n C2B CMB HEB sing 168 n n C3B C4B HEB sing 169 n n C3B CAB HEB sing 170 n n CMB HMB1 HEB sing 171 n n CMB HMB2 HEB sing 172 n n CMB HMB3 HEB sing 173 n n CAB CBB HEB sing 174 n n CAB HAB HEB sing 175 n n CAB HAB2 HEB sing 176 n n CBB HBB1 HEB sing 177 n n CBB HBB2 HEB sing 178 n n CBB HBB3 HEB sing 179 n n NC C1C HEB sing 180 n y NC C4C HEB sing 181 n y C1C C2C HEB doub 182 n y C2C C3C HEB sing 183 n y C2C CMC HEB sing 184 n n C3C C4C HEB doub 185 n y C3C CAC HEB sing 186 n n CMC HMC1 HEB sing 187 n n CMC HMC2 HEB sing 188 n n CMC HMC3 HEB sing 189 n n CAC CBC HEB doub 190 n n CAC HAC HEB sing 191 n n CBC HBC1 HEB sing 192 n n CBC HBC2 HEB sing 193 n n ND C1D HEB sing 194 n n ND C4D HEB doub 195 n n C1D C2D HEB sing 196 n n C2D C3D HEB doub 197 n n C2D CMD HEB sing 198 n n C3D C4D HEB sing 199 n n C3D CAD HEB sing 200 n n CMD HMD1 HEB sing 201 n n CMD HMD2 HEB sing 202 n n CMD HMD3 HEB sing 203 n n CAD CBD HEB sing 204 n n CAD HAD1 HEB sing 205 n n CAD HAD2 HEB sing 206 n n CBD CGD HEB sing 207 n n CBD HBD1 HEB sing 208 n n CBD HBD2 HEB sing 209 n n CGD O1D HEB doub 210 n n CGD O2D HEB sing 211 n n O2D H2D HEB sing 212 n n # _atom_sites.entry_id 1QQ3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEB _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 107 _pdbx_nonpoly_scheme.auth_seq_num 107 _pdbx_nonpoly_scheme.pdb_mon_id HEB _pdbx_nonpoly_scheme.auth_mon_id HEM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEB . . . B 2 -6.471 7.011 2.161 1 0 ? FE HEB 107 A 1 HETATM 2 C CHA HEB . . . B 2 -9.567 7.713 3.487 1 0 ? CHA HEB 107 A 1 HETATM 3 C CHB HEB . . . B 2 -5.834 4.834 4.767 1 0 ? CHB HEB 107 A 1 HETATM 4 C CHC HEB . . . B 2 -3.429 6.418 0.822 1 0 ? CHC HEB 107 A 1 HETATM 5 C CHD HEB . . . B 2 -7.214 9.142 -0.576 1 0 ? CHD HEB 107 A 1 HETATM 6 N NA HEB . . . B 2 -7.504 6.41 3.848 1 0 ? NA HEB 107 A 1 HETATM 7 C C1A HEB . . . B 2 -8.732 6.861 4.191 1 0 ? C1A HEB 107 A 1 HETATM 8 C C2A HEB . . . B 2 -9.087 6.256 5.449 1 0 ? C2A HEB 107 A 1 HETATM 9 C C3A HEB . . . B 2 -8.074 5.38 5.782 1 0 ? C3A HEB 107 A 1 HETATM 10 C C4A HEB . . . B 2 -7.053 5.51 4.768 1 0 ? C4A HEB 107 A 1 HETATM 11 C CMA HEB . . . B 2 -8.051 4.405 6.934 1 0 ? CMA HEB 107 A 1 HETATM 12 C CAA HEB . . . B 2 -10.322 6.609 6.244 1 0 ? CAA HEB 107 A 1 HETATM 13 C CBA HEB . . . B 2 -11.667 6.389 5.527 1 0 ? CBA HEB 107 A 1 HETATM 14 C CGA HEB . . . B 2 -12.506 7.661 5.532 1 0 ? CGA HEB 107 A 1 HETATM 15 O O1A HEB . . . B 2 -12.517 8.341 6.581 1 0 ? O1A HEB 107 A 1 HETATM 16 O O2A HEB . . . B 2 -13.081 7.951 4.466 1 0 ? O2A HEB 107 A 1 HETATM 17 N NB HEB . . . B 2 -4.893 5.907 2.731 1 0 ? NB HEB 107 A 1 HETATM 18 C C1B HEB . . . B 2 -4.846 5.067 3.807 1 0 ? C1B HEB 107 A 1 HETATM 19 C C2B HEB . . . B 2 -3.564 4.408 3.778 1 0 ? C2B HEB 107 A 1 HETATM 20 C C3B HEB . . . B 2 -2.878 4.903 2.689 1 0 ? C3B HEB 107 A 1 HETATM 21 C C4B HEB . . . B 2 -3.759 5.804 2.01 1 0 ? C4B HEB 107 A 1 HETATM 22 C CMB HEB . . . B 2 -3.115 3.339 4.739 1 0 ? CMB HEB 107 A 1 HETATM 23 C CAB HEB . . . B 2 -1.46 4.635 2.259 1 0 ? CAB HEB 107 A 1 HETATM 24 C CBB HEB . . . B 2 -1.261 3.283 1.606 1 0 ? CBB HEB 107 A 1 HETATM 25 N NC HEB . . . B 2 -5.508 7.652 0.444 1 0 ? NC HEB 107 A 1 HETATM 26 C C1C HEB . . . B 2 -4.244 7.279 0.147 1 0 ? C1C HEB 107 A 1 HETATM 27 C C2C HEB . . . B 2 -3.816 7.94 -1.047 1 0 ? C2C HEB 107 A 1 HETATM 28 C C3C HEB . . . B 2 -4.875 8.72 -1.44 1 0 ? C3C HEB 107 A 1 HETATM 29 C C4C HEB . . . B 2 -5.963 8.532 -0.507 1 0 ? C4C HEB 107 A 1 HETATM 30 C CMC HEB . . . B 2 -2.465 7.744 -1.682 1 0 ? CMC HEB 107 A 1 HETATM 31 C CAC HEB . . . B 2 -4.868 9.678 -2.609 1 0 ? CAC HEB 107 A 1 HETATM 32 C CBC HEB . . . B 2 -4.904 9.203 -3.871 1 0 ? CBC HEB 107 A 1 HETATM 33 N ND HEB . . . B 2 -8.114 8.165 1.538 1 0 ? ND HEB 107 A 1 HETATM 34 C C1D HEB . . . B 2 -8.201 8.921 0.393 1 0 ? C1D HEB 107 A 1 HETATM 35 C C2D HEB . . . B 2 -9.534 9.483 0.362 1 0 ? C2D HEB 107 A 1 HETATM 36 C C3D HEB . . . B 2 -10.179 9.09 1.512 1 0 ? C3D HEB 107 A 1 HETATM 37 C C4D HEB . . . B 2 -9.267 8.259 2.249 1 0 ? C4D HEB 107 A 1 HETATM 38 C CMD HEB . . . B 2 -10.121 10.366 -0.705 1 0 ? CMD HEB 107 A 1 HETATM 39 C CAD HEB . . . B 2 -11.573 9.487 1.948 1 0 ? CAD HEB 107 A 1 HETATM 40 C CBD HEB . . . B 2 -12.657 8.578 1.374 1 0 ? CBD HEB 107 A 1 HETATM 41 C CGD HEB . . . B 2 -14.054 9.166 1.513 1 0 ? CGD HEB 107 A 1 HETATM 42 O O1D HEB . . . B 2 -14.143 10.365 1.858 1 0 ? O1D HEB 107 A 1 HETATM 43 O O2D HEB . . . B 2 -15.007 8.429 1.185 1 0 ? O2D HEB 107 A 1 HETATM 44 H HHA HEB . . . B 2 -10.527 7.936 3.906 1 0 ? HHA HEB 107 A 1 HETATM 45 H HHB HEB . . . B 2 -5.63 4.139 5.562 1 0 ? HHB HEB 107 A 1 HETATM 46 H HHC HEB . . . B 2 -2.486 6.213 0.361 1 0 ? HHC HEB 107 A 1 HETATM 47 H HHD HEB . . . B 2 -7.419 9.802 -1.404 1 0 ? HHD HEB 107 A 1 HETATM 48 H HMA1 HEB . . . B 2 -9.047 4.276 7.355 1 0 ? HMA1 HEB 107 A 1 HETATM 49 H HMA2 HEB . . . B 2 -7.711 3.433 6.574 1 0 ? HMA2 HEB 107 A 1 HETATM 50 H HMA3 HEB . . . B 2 -7.37 4.763 7.705 1 0 ? HMA3 HEB 107 A 1 HETATM 51 H HAA1 HEB . . . B 2 -10.346 6.1 7.206 1 0 ? HAA1 HEB 107 A 1 HETATM 52 H HAA2 HEB . . . B 2 -10.223 7.676 6.436 1 0 ? HAA2 HEB 107 A 1 HETATM 53 H HBA1 HEB . . . B 2 -12.244 5.635 6.038 1 0 ? HBA1 HEB 107 A 1 HETATM 54 H HBA2 HEB . . . B 2 -11.528 6.031 4.504 1 0 ? HBA2 HEB 107 A 1 HETATM 55 H HMB1 HEB . . . B 2 -2.23 2.838 4.362 1 0 ? HMB1 HEB 107 A 1 HETATM 56 H HMB2 HEB . . . B 2 -2.893 3.786 5.708 1 0 ? HMB2 HEB 107 A 1 HETATM 57 H HMB3 HEB . . . B 2 -3.908 2.604 4.853 1 0 ? HMB3 HEB 107 A 1 HETATM 58 H HAB HEB . . . B 2 -1.112 5.353 1.531 1 0 ? HAB HEB 107 A 1 HETATM 59 H HBB1 HEB . . . B 2 -0.205 3.148 1.373 1 0 ? HBB1 HEB 107 A 1 HETATM 60 H HBB2 HEB . . . B 2 -1.616 2.477 2.242 1 0 ? HBB2 HEB 107 A 1 HETATM 61 H HBB3 HEB . . . B 2 -1.839 3.322 0.683 1 0 ? HBB3 HEB 107 A 1 HETATM 62 H HMC1 HEB . . . B 2 -2.25 6.671 -1.771 1 0 ? HMC1 HEB 107 A 1 HETATM 63 H HMC2 HEB . . . B 2 -2.435 8.217 -2.654 1 0 ? HMC2 HEB 107 A 1 HETATM 64 H HMC3 HEB . . . B 2 -1.705 8.188 -1.04 1 0 ? HMC3 HEB 107 A 1 HETATM 65 H HAC HEB . . . B 2 -5.156 10.703 -2.436 1 0 ? HAC HEB 107 A 1 HETATM 66 H HBC1 HEB . . . B 2 -4.489 8.237 -4.112 1 0 ? HBC1 HEB 107 A 1 HETATM 67 H HBC2 HEB . . . B 2 -5.291 9.82 -4.664 1 0 ? HBC2 HEB 107 A 1 HETATM 68 H HMD1 HEB . . . B 2 -9.963 11.405 -0.428 1 0 ? HMD1 HEB 107 A 1 HETATM 69 H HMD2 HEB . . . B 2 -9.668 10.168 -1.675 1 0 ? HMD2 HEB 107 A 1 HETATM 70 H HMD3 HEB . . . B 2 -11.191 10.183 -0.766 1 0 ? HMD3 HEB 107 A 1 HETATM 71 H HAD1 HEB . . . B 2 -11.685 9.456 3.037 1 0 ? HAD1 HEB 107 A 1 HETATM 72 H HAD2 HEB . . . B 2 -11.744 10.512 1.619 1 0 ? HAD2 HEB 107 A 1 HETATM 73 H HBD1 HEB . . . B 2 -12.487 8.446 0.316 1 0 ? HBD1 HEB 107 A 1 HETATM 74 H HBD2 HEB . . . B 2 -12.61 7.614 1.886 1 0 ? HBD2 HEB 107 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 74 #