data_1QQB # _model_server_result.job_id JGQF3M6nFJapnjNFAsMR-w _model_server_result.datetime_utc '2025-03-27 23:05:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":599}' # _entry.id 1QQB # _exptl.entry_id 1QQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.111 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HYPOXANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QQB _cell.length_a 176.62 _cell.length_b 95.61 _cell.length_c 80.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QQB _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DA 2 M DA 700 1_555 A N3 DT 17 M DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 2 M DA 700 1_555 A O4 DT 17 M DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 3 M DC 701 1_555 A N1 DG 16 M DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 3 M DC 701 1_555 A O6 DG 16 M DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 3 M DC 701 1_555 A N2 DG 16 M DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 4 M DG 702 1_555 A N3 DC 15 M DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 4 M DG 702 1_555 A O2 DC 15 M DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 4 M DG 702 1_555 A N4 DC 15 M DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 5 M DC 703 1_555 A N1 DG 14 M DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 5 M DC 703 1_555 A O6 DG 14 M DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 5 M DC 703 1_555 A N2 DG 14 M DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 6 M DA 704 1_555 A N3 DT 13 M DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 6 M DA 704 1_555 A O4 DT 13 M DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 7 M DA 705 1_555 A N3 DT 12 M DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 7 M DA 705 1_555 A O4 DT 12 M DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 8 M DT 706 1_555 A N1 DA 11 M DA 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 8 M DT 706 1_555 A N6 DA 11 M DA 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 9 M DC 707 1_555 A N1 DG 10 M DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 9 M DC 707 1_555 A O6 DG 10 M DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 9 M DC 707 1_555 A N2 DG 10 M DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DG 10 M DG 708 1_555 A N3 DC 9 M DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 DG 10 M DG 708 1_555 A O2 DC 9 M DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 DG 10 M DG 708 1_555 A N4 DC 9 M DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DA 11 M DA 709 1_555 A N3 DT 8 M DT 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N6 DA 11 M DA 709 1_555 A O4 DT 8 M DT 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DT 12 M DT 710 1_555 A N1 DA 7 M DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O4 DT 12 M DT 710 1_555 A N6 DA 7 M DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N3 DT 13 M DT 711 1_555 A N1 DA 6 M DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O4 DT 13 M DT 711 1_555 A N6 DA 6 M DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 14 M DG 712 1_555 A N3 DC 5 M DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 14 M DG 712 1_555 A O2 DC 5 M DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 14 M DG 712 1_555 A N4 DC 5 M DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 DC 15 M DC 713 1_555 A N1 DG 4 M DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N4 DC 15 M DC 713 1_555 A O6 DG 4 M DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O2 DC 15 M DC 713 1_555 A N2 DG 4 M DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DG 16 M DG 714 1_555 A N3 DC 3 M DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N2 DG 16 M DG 714 1_555 A O2 DC 3 M DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O6 DG 16 M DG 714 1_555 A N4 DC 3 M DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N3 DT 17 M DT 715 1_555 A N1 DA 2 M DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O4 DT 17 M DT 715 1_555 A N6 DA 2 M DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C5 H4 N4 O' _chem_comp.formula_weight 136.111 _chem_comp.id HPA _chem_comp.mon_nstd_flag . _chem_comp.name HYPOXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HPA sing 301 n y N1 C6 HPA sing 302 n y N1 HN1 HPA sing 303 n n C2 N3 HPA doub 304 n y C2 H2 HPA sing 305 n n N3 C4 HPA sing 306 n y C4 C5 HPA doub 307 n y C4 N9 HPA sing 308 n y C5 C6 HPA sing 309 n y C5 N7 HPA sing 310 n y C6 O6 HPA doub 311 n n N7 C8 HPA sing 312 n y N7 HN7 HPA sing 313 n n C8 N9 HPA doub 314 n y C8 H8 HPA sing 315 n n # _atom_sites.entry_id 1QQB _atom_sites.fract_transf_matrix[1][1] 0.005662 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HPA A 1 599 599 HPA HPA . D 4 HOH M 1 718 718 HOH HOH . D 4 HOH M 2 723 723 HOH HOH . D 4 HOH M 3 744 744 HOH HOH . D 4 HOH M 4 750 750 HOH HOH . D 4 HOH M 5 751 751 HOH HOH . D 4 HOH M 6 752 752 HOH HOH . D 4 HOH M 7 757 757 HOH HOH . D 4 HOH M 8 760 760 HOH HOH . D 4 HOH M 9 769 769 HOH HOH . D 4 HOH M 10 770 770 HOH HOH . D 4 HOH M 11 771 771 HOH HOH . E 4 HOH A 1 717 717 HOH HOH . E 4 HOH A 2 719 719 HOH HOH . E 4 HOH A 3 720 720 HOH HOH . E 4 HOH A 4 721 721 HOH HOH . E 4 HOH A 5 722 722 HOH HOH . E 4 HOH A 6 724 724 HOH HOH . E 4 HOH A 7 725 725 HOH HOH . E 4 HOH A 8 726 726 HOH HOH . E 4 HOH A 9 727 727 HOH HOH . E 4 HOH A 10 728 728 HOH HOH . E 4 HOH A 11 729 729 HOH HOH . E 4 HOH A 12 730 730 HOH HOH . E 4 HOH A 13 731 731 HOH HOH . E 4 HOH A 14 732 732 HOH HOH . E 4 HOH A 15 733 733 HOH HOH . E 4 HOH A 16 734 734 HOH HOH . E 4 HOH A 17 735 735 HOH HOH . E 4 HOH A 18 736 736 HOH HOH . E 4 HOH A 19 737 737 HOH HOH . E 4 HOH A 20 738 738 HOH HOH . E 4 HOH A 21 739 739 HOH HOH . E 4 HOH A 22 740 740 HOH HOH . E 4 HOH A 23 741 741 HOH HOH . E 4 HOH A 24 742 742 HOH HOH . E 4 HOH A 25 743 743 HOH HOH . E 4 HOH A 26 745 745 HOH HOH . E 4 HOH A 27 746 746 HOH HOH . E 4 HOH A 28 747 747 HOH HOH . E 4 HOH A 29 748 748 HOH HOH . E 4 HOH A 30 749 749 HOH HOH . E 4 HOH A 31 753 753 HOH HOH . E 4 HOH A 32 754 754 HOH HOH . E 4 HOH A 33 755 755 HOH HOH . E 4 HOH A 34 756 756 HOH HOH . E 4 HOH A 35 758 758 HOH HOH . E 4 HOH A 36 759 759 HOH HOH . E 4 HOH A 37 761 761 HOH HOH . E 4 HOH A 38 762 762 HOH HOH . E 4 HOH A 39 763 763 HOH HOH . E 4 HOH A 40 764 764 HOH HOH . E 4 HOH A 41 765 765 HOH HOH . E 4 HOH A 42 766 766 HOH HOH . E 4 HOH A 43 767 767 HOH HOH . E 4 HOH A 44 768 768 HOH HOH . E 4 HOH A 45 772 772 HOH HOH . E 4 HOH A 46 773 773 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HPA . . . C 3 57.196 2.654 -10.955 1 47.79 ? N1 HPA 599 A 1 HETATM 2 C C2 HPA . . . C 3 58.002 2.644 -9.841 1 50.52 ? C2 HPA 599 A 1 HETATM 3 N N3 HPA . . . C 3 58.662 3.692 -9.374 1 29.5 ? N3 HPA 599 A 1 HETATM 4 C C4 HPA . . . C 3 58.455 4.771 -10.166 1 36.76 ? C4 HPA 599 A 1 HETATM 5 C C5 HPA . . . C 3 57.662 4.89 -11.288 1 40.47 ? C5 HPA 599 A 1 HETATM 6 C C6 HPA . . . C 3 56.945 3.761 -11.753 1 30.19 ? C6 HPA 599 A 1 HETATM 7 O O6 HPA . . . C 3 56.162 3.649 -12.709 1 41.23 ? O6 HPA 599 A 1 HETATM 8 N N7 HPA . . . C 3 57.717 6.185 -11.788 1 34.66 ? N7 HPA 599 A 1 HETATM 9 C C8 HPA . . . C 3 58.539 6.807 -10.994 1 26.19 ? C8 HPA 599 A 1 HETATM 10 N N9 HPA . . . C 3 59 6.017 -9.967 1 22.73 ? N9 HPA 599 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #