data_1QR7 # _model_server_result.job_id XdkT5zl1Fw8LwWEnULethg _model_server_result.datetime_utc '2024-11-12 21:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2352}' # _entry.id 1QR7 # _exptl.entry_id 1QR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.042 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOENOLPYRUVATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.43 _cell.angle_gamma 90 _cell.entry_id 1QR7 _cell.length_a 211.731 _cell.length_b 51.326 _cell.length_c 148.099 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QR7 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 E PB PB . A PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.224 ? metalc ? metalc2 A NE2 HIS 268 A HIS 268 1_555 E PB PB . A PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc3 A OE1 GLU 302 A GLU 302 1_555 E PB PB . A PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.447 ? metalc ? metalc4 A OE2 GLU 302 A GLU 302 1_555 E PB PB . A PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc5 A OD2 ASP 326 A ASP 326 1_555 E PB PB . A PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc6 B SG CYS 61 B CYS 61 1_555 H PB PB . B PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.273 ? metalc ? metalc7 B NE2 HIS 268 B HIS 268 1_555 H PB PB . B PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc8 B OE1 GLU 302 B GLU 302 1_555 H PB PB . B PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.394 ? metalc ? metalc9 B OE2 GLU 302 B GLU 302 1_555 H PB PB . B PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc10 B OD2 ASP 326 B ASP 326 1_555 H PB PB . B PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc11 C SG CYS 61 C CYS 61 1_555 K PB PB . C PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.305 ? metalc ? metalc12 C NE2 HIS 268 C HIS 268 1_555 K PB PB . C PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc13 C OE1 GLU 302 C GLU 302 1_555 K PB PB . C PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.465 ? metalc ? metalc14 C OE2 GLU 302 C GLU 302 1_555 K PB PB . C PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc15 C OD2 ASP 326 C ASP 326 1_555 K PB PB . C PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc16 D SG CYS 61 D CYS 61 1_555 N PB PB . D PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc17 D NE2 HIS 268 D HIS 268 1_555 N PB PB . D PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc18 D OE2 GLU 302 D GLU 302 1_555 N PB PB . D PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc19 D OE1 GLU 302 D GLU 302 1_555 N PB PB . D PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.44 ? metalc ? metalc20 D OD2 ASP 326 D ASP 326 1_555 N PB PB . D PB 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? # _chem_comp.formula 'C3 H5 O6 P' _chem_comp.formula_weight 168.042 _chem_comp.id PEP _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOENOLPYRUVATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEP doub 237 n n C1 O2' PEP sing 238 n n C1 C2 PEP sing 239 n n O2' HO2 PEP sing 240 n n C2 C3 PEP doub 241 n n C2 O2 PEP sing 242 n n C3 H31 PEP sing 243 n n C3 H32 PEP sing 244 n n O2 P PEP sing 245 n n P O1P PEP doub 246 n n P O2P PEP sing 247 n n P O3P PEP sing 248 n n O2P HOP2 PEP sing 249 n n O3P HOP3 PEP sing 250 n n # _atom_sites.entry_id 1QR7 _atom_sites.fract_transf_matrix[1][1] 0.004723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002348 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PB A 1 351 351 PB PB . F 3 SO4 A 1 1353 353 SO4 SO4 . G 4 PEP A 1 1352 352 PEP PEP . H 2 PB B 1 351 351 PB PB . I 3 SO4 B 1 2353 353 SO4 SO4 . J 4 PEP B 1 2352 352 PEP PEP . K 2 PB C 1 351 351 PB PB . L 3 SO4 C 1 3353 353 SO4 SO4 . M 4 PEP C 1 3352 352 PEP PEP . N 2 PB D 1 351 351 PB PB . O 3 SO4 D 1 4353 353 SO4 SO4 . P 4 PEP D 1 4352 352 PEP PEP . Q 5 HOH A 1 401 401 HOH HOH . R 5 HOH B 1 402 402 HOH HOH . S 5 HOH C 1 403 403 HOH HOH . T 5 HOH D 1 404 404 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEP . . . J 4 31.495 15.031 52.762 1 37.05 ? C1 PEP 2352 B 1 HETATM 2 O O1 PEP . . . J 4 32.489 15.839 52.904 1 39.22 ? O1 PEP 2352 B 1 HETATM 3 O O2' PEP . . . J 4 31.413 13.97 53.349 1 29.95 ? O2' PEP 2352 B 1 HETATM 4 C C2 PEP . . . J 4 30.457 15.545 51.802 1 28.89 ? C2 PEP 2352 B 1 HETATM 5 C C3 PEP . . . J 4 30.442 16.698 51.094 1 30.02 ? C3 PEP 2352 B 1 HETATM 6 O O2 PEP . . . J 4 29.363 14.714 51.627 1 32.8 ? O2 PEP 2352 B 1 HETATM 7 P P PEP . . . J 4 29.004 13.887 50.333 1 28.74 ? P PEP 2352 B 1 HETATM 8 O O1P PEP . . . J 4 30.34 13.72 49.555 1 29.35 ? O1P PEP 2352 B 1 HETATM 9 O O2P PEP . . . J 4 27.985 14.752 49.641 1 32.39 ? O2P PEP 2352 B 1 HETATM 10 O O3P PEP . . . J 4 28.536 12.541 50.751 1 13.86 ? O3P PEP 2352 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 10 #