data_1QRD # _model_server_result.job_id sp-urQImqjl5sdRIfeplnA _model_server_result.datetime_utc '2024-10-19 17:32:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":274}' # _entry.id 1QRD # _exptl.entry_id 1QRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.6 _cell.angle_gamma 90 _cell.entry_id 1QRD _cell.length_a 72 _cell.length_b 107 _cell.length_c 88.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1,2 B,F,G,H,J 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 67.989912 0 88.308998 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 183 n n PA O2A FAD sing 184 n n PA O5B FAD sing 185 n n PA O3P FAD sing 186 n n O2A HOA2 FAD sing 187 n n O5B C5B FAD sing 188 n n C5B C4B FAD sing 189 n n C5B H51A FAD sing 190 n n C5B H52A FAD sing 191 n n C4B O4B FAD sing 192 n n C4B C3B FAD sing 193 n n C4B H4B FAD sing 194 n n O4B C1B FAD sing 195 n n C3B O3B FAD sing 196 n n C3B C2B FAD sing 197 n n C3B H3B FAD sing 198 n n O3B HO3A FAD sing 199 n n C2B O2B FAD sing 200 n n C2B C1B FAD sing 201 n n C2B H2B FAD sing 202 n n O2B HO2A FAD sing 203 n n C1B N9A FAD sing 204 n n C1B H1B FAD sing 205 n n N9A C8A FAD sing 206 n y N9A C4A FAD sing 207 n y C8A N7A FAD doub 208 n y C8A H8A FAD sing 209 n n N7A C5A FAD sing 210 n y C5A C6A FAD sing 211 n y C5A C4A FAD doub 212 n y C6A N6A FAD sing 213 n n C6A N1A FAD doub 214 n y N6A H61A FAD sing 215 n n N6A H62A FAD sing 216 n n N1A C2A FAD sing 217 n y C2A N3A FAD doub 218 n y C2A H2A FAD sing 219 n n N3A C4A FAD sing 220 n y N1 C2 FAD sing 221 n n N1 C10 FAD doub 222 n n C2 O2 FAD doub 223 n n C2 N3 FAD sing 224 n n N3 C4 FAD sing 225 n n N3 HN3 FAD sing 226 n n C4 O4 FAD doub 227 n n C4 C4X FAD sing 228 n n C4X N5 FAD doub 229 n n C4X C10 FAD sing 230 n n N5 C5X FAD sing 231 n n C5X C6 FAD doub 232 n y C5X C9A FAD sing 233 n y C6 C7 FAD sing 234 n y C6 H6 FAD sing 235 n n C7 C7M FAD sing 236 n n C7 C8 FAD doub 237 n y C7M HM71 FAD sing 238 n n C7M HM72 FAD sing 239 n n C7M HM73 FAD sing 240 n n C8 C8M FAD sing 241 n n C8 C9 FAD sing 242 n y C8M HM81 FAD sing 243 n n C8M HM82 FAD sing 244 n n C8M HM83 FAD sing 245 n n C9 C9A FAD doub 246 n y C9 H9 FAD sing 247 n n C9A N10 FAD sing 248 n n N10 C10 FAD sing 249 n n N10 C1' FAD sing 250 n n C1' C2' FAD sing 251 n n C1' "H1'1" FAD sing 252 n n C1' "H1'2" FAD sing 253 n n C2' O2' FAD sing 254 n n C2' C3' FAD sing 255 n n C2' H2' FAD sing 256 n n O2' HO2' FAD sing 257 n n C3' O3' FAD sing 258 n n C3' C4' FAD sing 259 n n C3' H3' FAD sing 260 n n O3' HO3' FAD sing 261 n n C4' O4' FAD sing 262 n n C4' C5' FAD sing 263 n n C4' H4' FAD sing 264 n n O4' HO4' FAD sing 265 n n C5' O5' FAD sing 266 n n C5' "H5'1" FAD sing 267 n n C5' "H5'2" FAD sing 268 n n O5' P FAD sing 269 n n P O1P FAD doub 270 n n P O2P FAD sing 271 n n P O3P FAD sing 272 n n O2P HOP2 FAD sing 273 n n # _atom_sites.entry_id 1QRD _atom_sites.fract_transf_matrix[1][1] 0.013889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000631 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 274 1 FAD FAD . D 3 CBD A 1 275 2 CBD CBD . E 4 DQN A 1 276 3 DQN DQN . F 2 FAD B 1 274 1 FAD FAD . G 3 CBD B 1 275 2 CBD CBD . H 4 DQN B 1 276 3 DQN DQN . I 5 HOH A 1 277 1 HOH HOH . I 5 HOH A 2 278 2 HOH HOH . I 5 HOH A 3 279 3 HOH HOH . I 5 HOH A 4 280 4 HOH HOH . I 5 HOH A 5 281 5 HOH HOH . I 5 HOH A 6 282 6 HOH HOH . I 5 HOH A 7 283 7 HOH HOH . I 5 HOH A 8 284 8 HOH HOH . I 5 HOH A 9 285 9 HOH HOH . I 5 HOH A 10 286 10 HOH HOH . I 5 HOH A 11 287 11 HOH HOH . I 5 HOH A 12 288 12 HOH HOH . I 5 HOH A 13 289 13 HOH HOH . I 5 HOH A 14 290 14 HOH HOH . I 5 HOH A 15 291 15 HOH HOH . I 5 HOH A 16 292 16 HOH HOH . I 5 HOH A 17 293 17 HOH HOH . I 5 HOH A 18 294 18 HOH HOH . I 5 HOH A 19 295 19 HOH HOH . I 5 HOH A 20 296 20 HOH HOH . I 5 HOH A 21 297 21 HOH HOH . I 5 HOH A 22 298 22 HOH HOH . I 5 HOH A 23 299 23 HOH HOH . I 5 HOH A 24 300 24 HOH HOH . I 5 HOH A 25 301 15 HOH HOH . J 5 HOH B 1 277 1 HOH HOH . J 5 HOH B 2 278 2 HOH HOH . J 5 HOH B 3 279 3 HOH HOH . J 5 HOH B 4 280 4 HOH HOH . J 5 HOH B 5 281 5 HOH HOH . J 5 HOH B 6 282 6 HOH HOH . J 5 HOH B 7 283 7 HOH HOH . J 5 HOH B 8 284 8 HOH HOH . J 5 HOH B 9 285 9 HOH HOH . J 5 HOH B 10 286 10 HOH HOH . J 5 HOH B 11 287 11 HOH HOH . J 5 HOH B 12 288 12 HOH HOH . J 5 HOH B 13 289 13 HOH HOH . J 5 HOH B 14 290 14 HOH HOH . J 5 HOH B 15 291 16 HOH HOH . J 5 HOH B 16 292 17 HOH HOH . J 5 HOH B 17 293 18 HOH HOH . J 5 HOH B 18 294 19 HOH HOH . J 5 HOH B 19 295 20 HOH HOH . J 5 HOH B 20 296 21 HOH HOH . J 5 HOH B 21 297 22 HOH HOH . J 5 HOH B 22 298 23 HOH HOH . J 5 HOH B 23 299 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 23.803 17.262 26.585 1 19.38 ? PA FAD 274 A 1 HETATM 2 O O1A FAD . . . C 2 23.009 18.478 26.784 1 19.03 ? O1A FAD 274 A 1 HETATM 3 O O2A FAD . . . C 2 25.216 17.325 26.184 1 19.98 ? O2A FAD 274 A 1 HETATM 4 O O5B FAD . . . C 2 23.155 16.342 25.413 1 20.33 ? O5B FAD 274 A 1 HETATM 5 C C5B FAD . . . C 2 21.951 15.57 25.538 1 20.46 ? C5B FAD 274 A 1 HETATM 6 C C4B FAD . . . C 2 21.146 15.61 24.248 1 20.96 ? C4B FAD 274 A 1 HETATM 7 O O4B FAD . . . C 2 19.777 15.734 24.698 1 21.43 ? O4B FAD 274 A 1 HETATM 8 C C3B FAD . . . C 2 21.407 16.885 23.474 1 21.59 ? C3B FAD 274 A 1 HETATM 9 O O3B FAD . . . C 2 21.421 16.656 22.08 1 21.84 ? O3B FAD 274 A 1 HETATM 10 C C2B FAD . . . C 2 20.263 17.84 23.787 1 22.33 ? C2B FAD 274 A 1 HETATM 11 O O2B FAD . . . C 2 19.975 18.636 22.61 1 23.01 ? O2B FAD 274 A 1 HETATM 12 C C1B FAD . . . C 2 19.173 16.846 24.042 1 21.09 ? C1B FAD 274 A 1 HETATM 13 N N9A FAD . . . C 2 18.036 17.412 24.767 1 20.96 ? N9A FAD 274 A 1 HETATM 14 C C8A FAD . . . C 2 18.018 18.309 25.771 1 20 ? C8A FAD 274 A 1 HETATM 15 N N7A FAD . . . C 2 16.759 18.461 26.239 1 19.96 ? N7A FAD 274 A 1 HETATM 16 C C5A FAD . . . C 2 16.031 17.658 25.489 1 19.71 ? C5A FAD 274 A 1 HETATM 17 C C6A FAD . . . C 2 14.696 17.392 25.68 1 20.39 ? C6A FAD 274 A 1 HETATM 18 N N6A FAD . . . C 2 13.938 18.15 26.463 1 20.13 ? N6A FAD 274 A 1 HETATM 19 N N1A FAD . . . C 2 14.173 16.408 24.92 1 21.32 ? N1A FAD 274 A 1 HETATM 20 C C2A FAD . . . C 2 14.894 15.747 24.003 1 21.35 ? C2A FAD 274 A 1 HETATM 21 N N3A FAD . . . C 2 16.185 16.033 23.816 1 21.33 ? N3A FAD 274 A 1 HETATM 22 C C4A FAD . . . C 2 16.789 16.978 24.566 1 20.87 ? C4A FAD 274 A 1 HETATM 23 N N1 FAD . . . C 2 31.008 10.005 30.582 1 17.72 ? N1 FAD 274 A 1 HETATM 24 C C2 FAD . . . C 2 31.11 8.686 31.026 1 17.09 ? C2 FAD 274 A 1 HETATM 25 O O2 FAD . . . C 2 30.425 7.778 30.543 1 16.86 ? O2 FAD 274 A 1 HETATM 26 N N3 FAD . . . C 2 32.069 8.515 32.035 1 17.14 ? N3 FAD 274 A 1 HETATM 27 C C4 FAD . . . C 2 32.801 9.554 32.672 1 16.75 ? C4 FAD 274 A 1 HETATM 28 O O4 FAD . . . C 2 33.432 9.282 33.689 1 15.95 ? O4 FAD 274 A 1 HETATM 29 C C4X FAD . . . C 2 32.651 10.851 32.071 1 16.38 ? C4X FAD 274 A 1 HETATM 30 N N5 FAD . . . C 2 33.487 11.796 32.576 1 16.14 ? N5 FAD 274 A 1 HETATM 31 C C5X FAD . . . C 2 33.352 13.09 32.097 1 16.99 ? C5X FAD 274 A 1 HETATM 32 C C6 FAD . . . C 2 34.135 14.091 32.668 1 15.87 ? C6 FAD 274 A 1 HETATM 33 C C7 FAD . . . C 2 33.831 15.414 32.404 1 15.63 ? C7 FAD 274 A 1 HETATM 34 C C7M FAD . . . C 2 34.293 16.527 33.354 1 15.04 ? C7M FAD 274 A 1 HETATM 35 C C8 FAD . . . C 2 32.906 15.729 31.385 1 16.79 ? C8 FAD 274 A 1 HETATM 36 C C8M FAD . . . C 2 32.606 17.22 30.948 1 15.75 ? C8M FAD 274 A 1 HETATM 37 C C9 FAD . . . C 2 32.21 14.724 30.741 1 16.24 ? C9 FAD 274 A 1 HETATM 38 C C9A FAD . . . C 2 32.379 13.414 31.129 1 16.99 ? C9A FAD 274 A 1 HETATM 39 N N10 FAD . . . C 2 31.53 12.435 30.611 1 17.37 ? N10 FAD 274 A 1 HETATM 40 C C10 FAD . . . C 2 31.714 11.14 31.054 1 17.39 ? C10 FAD 274 A 1 HETATM 41 C C1' FAD . . . C 2 30.607 12.725 29.672 1 16.62 ? C1' FAD 274 A 1 HETATM 42 C C2' FAD . . . C 2 29.132 12.557 30.066 1 16.8 ? C2' FAD 274 A 1 HETATM 43 O O2' FAD . . . C 2 28.785 12.249 31.435 1 16.21 ? O2' FAD 274 A 1 HETATM 44 C C3' FAD . . . C 2 28.158 13.506 29.386 1 16.49 ? C3' FAD 274 A 1 HETATM 45 O O3' FAD . . . C 2 28.653 14.585 28.643 1 16.21 ? O3' FAD 274 A 1 HETATM 46 C C4' FAD . . . C 2 26.652 13.311 29.473 1 17.02 ? C4' FAD 274 A 1 HETATM 47 O O4' FAD . . . C 2 26.254 13.091 30.813 1 17.19 ? O4' FAD 274 A 1 HETATM 48 C C5' FAD . . . C 2 25.795 14.407 28.758 1 16.97 ? C5' FAD 274 A 1 HETATM 49 O O5' FAD . . . C 2 24.596 14.809 29.46 1 16.6 ? O5' FAD 274 A 1 HETATM 50 P P FAD . . . C 2 24.139 16.372 29.424 1 16.02 ? P FAD 274 A 1 HETATM 51 O O1P FAD . . . C 2 23 16.475 30.372 1 15.33 ? O1P FAD 274 A 1 HETATM 52 O O2P FAD . . . C 2 25.306 17.225 29.652 1 15.39 ? O2P FAD 274 A 1 HETATM 53 O O3P FAD . . . C 2 23.61 16.427 27.94 1 17.43 ? O3P FAD 274 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #