data_1QRD # _model_server_result.job_id HR3cc36eYMvNQrWlJjGHMg _model_server_result.datetime_utc '2024-11-25 17:43:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":274}' # _entry.id 1QRD # _exptl.entry_id 1QRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.6 _cell.angle_gamma 90 _cell.entry_id 1QRD _cell.length_a 72 _cell.length_b 107 _cell.length_c 88.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1,2 B,F,G,H,J 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 67.989912 0 88.308998 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 183 n n PA O2A FAD sing 184 n n PA O5B FAD sing 185 n n PA O3P FAD sing 186 n n O2A HOA2 FAD sing 187 n n O5B C5B FAD sing 188 n n C5B C4B FAD sing 189 n n C5B H51A FAD sing 190 n n C5B H52A FAD sing 191 n n C4B O4B FAD sing 192 n n C4B C3B FAD sing 193 n n C4B H4B FAD sing 194 n n O4B C1B FAD sing 195 n n C3B O3B FAD sing 196 n n C3B C2B FAD sing 197 n n C3B H3B FAD sing 198 n n O3B HO3A FAD sing 199 n n C2B O2B FAD sing 200 n n C2B C1B FAD sing 201 n n C2B H2B FAD sing 202 n n O2B HO2A FAD sing 203 n n C1B N9A FAD sing 204 n n C1B H1B FAD sing 205 n n N9A C8A FAD sing 206 n y N9A C4A FAD sing 207 n y C8A N7A FAD doub 208 n y C8A H8A FAD sing 209 n n N7A C5A FAD sing 210 n y C5A C6A FAD sing 211 n y C5A C4A FAD doub 212 n y C6A N6A FAD sing 213 n n C6A N1A FAD doub 214 n y N6A H61A FAD sing 215 n n N6A H62A FAD sing 216 n n N1A C2A FAD sing 217 n y C2A N3A FAD doub 218 n y C2A H2A FAD sing 219 n n N3A C4A FAD sing 220 n y N1 C2 FAD sing 221 n n N1 C10 FAD doub 222 n n C2 O2 FAD doub 223 n n C2 N3 FAD sing 224 n n N3 C4 FAD sing 225 n n N3 HN3 FAD sing 226 n n C4 O4 FAD doub 227 n n C4 C4X FAD sing 228 n n C4X N5 FAD doub 229 n n C4X C10 FAD sing 230 n n N5 C5X FAD sing 231 n n C5X C6 FAD doub 232 n y C5X C9A FAD sing 233 n y C6 C7 FAD sing 234 n y C6 H6 FAD sing 235 n n C7 C7M FAD sing 236 n n C7 C8 FAD doub 237 n y C7M HM71 FAD sing 238 n n C7M HM72 FAD sing 239 n n C7M HM73 FAD sing 240 n n C8 C8M FAD sing 241 n n C8 C9 FAD sing 242 n y C8M HM81 FAD sing 243 n n C8M HM82 FAD sing 244 n n C8M HM83 FAD sing 245 n n C9 C9A FAD doub 246 n y C9 H9 FAD sing 247 n n C9A N10 FAD sing 248 n n N10 C10 FAD sing 249 n n N10 C1' FAD sing 250 n n C1' C2' FAD sing 251 n n C1' "H1'1" FAD sing 252 n n C1' "H1'2" FAD sing 253 n n C2' O2' FAD sing 254 n n C2' C3' FAD sing 255 n n C2' H2' FAD sing 256 n n O2' HO2' FAD sing 257 n n C3' O3' FAD sing 258 n n C3' C4' FAD sing 259 n n C3' H3' FAD sing 260 n n O3' HO3' FAD sing 261 n n C4' O4' FAD sing 262 n n C4' C5' FAD sing 263 n n C4' H4' FAD sing 264 n n O4' HO4' FAD sing 265 n n C5' O5' FAD sing 266 n n C5' "H5'1" FAD sing 267 n n C5' "H5'2" FAD sing 268 n n O5' P FAD sing 269 n n P O1P FAD doub 270 n n P O2P FAD sing 271 n n P O3P FAD sing 272 n n O2P HOP2 FAD sing 273 n n # _atom_sites.entry_id 1QRD _atom_sites.fract_transf_matrix[1][1] 0.013889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000631 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 274 1 FAD FAD . D 3 CBD A 1 275 2 CBD CBD . E 4 DQN A 1 276 3 DQN DQN . F 2 FAD B 1 274 1 FAD FAD . G 3 CBD B 1 275 2 CBD CBD . H 4 DQN B 1 276 3 DQN DQN . I 5 HOH A 1 277 1 HOH HOH . I 5 HOH A 2 278 2 HOH HOH . I 5 HOH A 3 279 3 HOH HOH . I 5 HOH A 4 280 4 HOH HOH . I 5 HOH A 5 281 5 HOH HOH . I 5 HOH A 6 282 6 HOH HOH . I 5 HOH A 7 283 7 HOH HOH . I 5 HOH A 8 284 8 HOH HOH . I 5 HOH A 9 285 9 HOH HOH . I 5 HOH A 10 286 10 HOH HOH . I 5 HOH A 11 287 11 HOH HOH . I 5 HOH A 12 288 12 HOH HOH . I 5 HOH A 13 289 13 HOH HOH . I 5 HOH A 14 290 14 HOH HOH . I 5 HOH A 15 291 15 HOH HOH . I 5 HOH A 16 292 16 HOH HOH . I 5 HOH A 17 293 17 HOH HOH . I 5 HOH A 18 294 18 HOH HOH . I 5 HOH A 19 295 19 HOH HOH . I 5 HOH A 20 296 20 HOH HOH . I 5 HOH A 21 297 21 HOH HOH . I 5 HOH A 22 298 22 HOH HOH . I 5 HOH A 23 299 23 HOH HOH . I 5 HOH A 24 300 24 HOH HOH . I 5 HOH A 25 301 15 HOH HOH . J 5 HOH B 1 277 1 HOH HOH . J 5 HOH B 2 278 2 HOH HOH . J 5 HOH B 3 279 3 HOH HOH . J 5 HOH B 4 280 4 HOH HOH . J 5 HOH B 5 281 5 HOH HOH . J 5 HOH B 6 282 6 HOH HOH . J 5 HOH B 7 283 7 HOH HOH . J 5 HOH B 8 284 8 HOH HOH . J 5 HOH B 9 285 9 HOH HOH . J 5 HOH B 10 286 10 HOH HOH . J 5 HOH B 11 287 11 HOH HOH . J 5 HOH B 12 288 12 HOH HOH . J 5 HOH B 13 289 13 HOH HOH . J 5 HOH B 14 290 14 HOH HOH . J 5 HOH B 15 291 16 HOH HOH . J 5 HOH B 16 292 17 HOH HOH . J 5 HOH B 17 293 18 HOH HOH . J 5 HOH B 18 294 19 HOH HOH . J 5 HOH B 19 295 20 HOH HOH . J 5 HOH B 20 296 21 HOH HOH . J 5 HOH B 21 297 22 HOH HOH . J 5 HOH B 22 298 23 HOH HOH . J 5 HOH B 23 299 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 2 14.376 -5.94 14.183 1 20.57 ? PA FAD 274 B 1 HETATM 2 O O1A FAD . . . F 2 13.817 -7.034 15.004 1 20.97 ? O1A FAD 274 B 1 HETATM 3 O O2A FAD . . . F 2 15.222 -6.237 13.015 1 20.56 ? O2A FAD 274 B 1 HETATM 4 O O5B FAD . . . F 2 15.301 -4.94 15.112 1 20.6 ? O5B FAD 274 B 1 HETATM 5 C C5B FAD . . . F 2 14.87 -4.315 16.319 1 19.79 ? C5B FAD 274 B 1 HETATM 6 C C4B FAD . . . F 2 15.939 -4.36 17.393 1 20.04 ? C4B FAD 274 B 1 HETATM 7 O O4B FAD . . . F 2 15.146 -4.523 18.577 1 20.78 ? O4B FAD 274 B 1 HETATM 8 C C3B FAD . . . F 2 16.757 -5.636 17.348 1 21 ? C3B FAD 274 B 1 HETATM 9 O O3B FAD . . . F 2 18.137 -5.363 17.532 1 21.83 ? O3B FAD 274 B 1 HETATM 10 C C2B FAD . . . F 2 16.316 -6.545 18.485 1 21.19 ? C2B FAD 274 B 1 HETATM 11 O O2B FAD . . . F 2 17.526 -7.135 19.002 1 22.16 ? O2B FAD 274 B 1 HETATM 12 C C1B FAD . . . F 2 15.718 -5.531 19.412 1 20.2 ? C1B FAD 274 B 1 HETATM 13 N N9A FAD . . . F 2 14.725 -6.057 20.357 1 18.84 ? N9A FAD 274 B 1 HETATM 14 C C8A FAD . . . F 2 13.706 -6.901 20.141 1 17.33 ? C8A FAD 274 B 1 HETATM 15 N N7A FAD . . . F 2 12.927 -6.984 21.235 1 16.74 ? N7A FAD 274 B 1 HETATM 16 C C5A FAD . . . F 2 13.514 -6.205 22.119 1 17.27 ? C5A FAD 274 B 1 HETATM 17 C C6A FAD . . . F 2 13.003 -5.898 23.364 1 17.97 ? C6A FAD 274 B 1 HETATM 18 N N6A FAD . . . F 2 12.152 -6.723 23.964 1 18.5 ? N6A FAD 274 B 1 HETATM 19 N N1A FAD . . . F 2 13.62 -4.902 24.035 1 17.89 ? N1A FAD 274 B 1 HETATM 20 C C2A FAD . . . F 2 14.7 -4.278 23.545 1 18.72 ? C2A FAD 274 B 1 HETATM 21 N N3A FAD . . . F 2 15.199 -4.601 22.346 1 18.8 ? N3A FAD 274 B 1 HETATM 22 C C4A FAD . . . F 2 14.614 -5.571 21.599 1 18.5 ? C4A FAD 274 B 1 HETATM 23 N N1 FAD . . . F 2 12.314 1.38 6.199 1 19.98 ? N1 FAD 274 B 1 HETATM 24 C C2 FAD . . . F 2 11.862 2.68 6 1 20.18 ? C2 FAD 274 B 1 HETATM 25 O O2 FAD . . . F 2 12.066 3.584 6.819 1 19.85 ? O2 FAD 274 B 1 HETATM 26 N N3 FAD . . . F 2 11.15 2.857 4.808 1 19.88 ? N3 FAD 274 B 1 HETATM 27 C C4 FAD . . . F 2 10.69 1.825 3.98 1 20 ? C4 FAD 274 B 1 HETATM 28 O O4 FAD . . . F 2 9.863 2.13 3.125 1 18.64 ? O4 FAD 274 B 1 HETATM 29 C C4X FAD . . . F 2 11.272 0.501 4.287 1 19.95 ? C4X FAD 274 B 1 HETATM 30 N N5 FAD . . . F 2 11.048 -0.473 3.348 1 19.59 ? N5 FAD 274 B 1 HETATM 31 C C5X FAD . . . F 2 11.519 -1.751 3.613 1 20.04 ? C5X FAD 274 B 1 HETATM 32 C C6 FAD . . . F 2 11.158 -2.752 2.748 1 19.82 ? C6 FAD 274 B 1 HETATM 33 C C7 FAD . . . F 2 11.389 -4.06 3.068 1 19.32 ? C7 FAD 274 B 1 HETATM 34 C C7M FAD . . . F 2 10.817 -5.144 2.172 1 19.44 ? C7M FAD 274 B 1 HETATM 35 C C8 FAD . . . F 2 12.095 -4.396 4.222 1 19.5 ? C8 FAD 274 B 1 HETATM 36 C C8M FAD . . . F 2 12.407 -5.868 4.569 1 18.28 ? C8M FAD 274 B 1 HETATM 37 C C9 FAD . . . F 2 12.528 -3.391 5.064 1 19.83 ? C9 FAD 274 B 1 HETATM 38 C C9A FAD . . . F 2 12.208 -2.065 4.794 1 20.14 ? C9A FAD 274 B 1 HETATM 39 N N10 FAD . . . F 2 12.435 -1.082 5.751 1 20.36 ? N10 FAD 274 B 1 HETATM 40 C C10 FAD . . . F 2 12.023 0.223 5.448 1 20.27 ? C10 FAD 274 B 1 HETATM 41 C C1' FAD . . . F 2 13.122 -1.375 6.883 1 19.17 ? C1' FAD 274 B 1 HETATM 42 C C2' FAD . . . F 2 12.41 -1.14 8.23 1 18.85 ? C2' FAD 274 B 1 HETATM 43 O O2' FAD . . . F 2 11.033 -0.81 8.317 1 17.44 ? O2' FAD 274 B 1 HETATM 44 C C3' FAD . . . F 2 12.806 -1.997 9.4 1 18.45 ? C3' FAD 274 B 1 HETATM 45 O O3' FAD . . . F 2 13.749 -3.01 9.177 1 19.33 ? O3' FAD 274 B 1 HETATM 46 C C4' FAD . . . F 2 12.264 -1.813 10.793 1 18.23 ? C4' FAD 274 B 1 HETATM 47 O O4' FAD . . . F 2 10.886 -1.452 10.853 1 17.87 ? O4' FAD 274 B 1 HETATM 48 C C5' FAD . . . F 2 12.664 -3.003 11.666 1 18.3 ? C5' FAD 274 B 1 HETATM 49 O O5' FAD . . . F 2 11.751 -3.379 12.696 1 17.67 ? O5' FAD 274 B 1 HETATM 50 P P FAD . . . F 2 11.74 -4.926 13.172 1 17.72 ? P FAD 274 B 1 HETATM 51 O O1P FAD . . . F 2 10.677 -5.063 14.192 1 16.39 ? O1P FAD 274 B 1 HETATM 52 O O2P FAD . . . F 2 11.735 -5.813 11.984 1 17.45 ? O2P FAD 274 B 1 HETATM 53 O O3P FAD . . . F 2 13.154 -4.951 13.853 1 18.63 ? O3P FAD 274 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #