data_1QRD # _model_server_result.job_id tNwLwE1fgIHXmIZMbMV_ww _model_server_result.datetime_utc '2025-02-18 06:30:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":275}' # _entry.id 1QRD # _exptl.entry_id 1QRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 774.157 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CIBACRON BLUE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.6 _cell.angle_gamma 90 _cell.entry_id 1QRD _cell.length_a 72 _cell.length_b 107 _cell.length_c 88.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1,2 B,F,G,H,J 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 67.989912 0 88.308998 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C29 H20 Cl N7 O11 S3' _chem_comp.formula_weight 774.157 _chem_comp.id CBD _chem_comp.mon_nstd_flag . _chem_comp.name 'CIBACRON BLUE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 SA CBD sing 70 n n C1 C2 CBD doub 71 n y C1 C14 CBD sing 72 n y SA O1A CBD doub 73 n n SA O2A CBD doub 74 n n SA O3A CBD sing 75 n n O3A HOA3 CBD sing 76 n n C2 N2 CBD sing 77 n n C2 C3 CBD sing 78 n y N2 HN21 CBD sing 79 n n N2 HN22 CBD sing 80 n n C3 C4 CBD sing 81 n n C3 C12 CBD doub 82 n y C4 O4 CBD doub 83 n n C4 C5 CBD sing 84 n n C5 C6 CBD doub 85 n y C5 C10 CBD sing 86 n y C6 C7 CBD sing 87 n y C6 H6 CBD sing 88 n n C7 C8 CBD doub 89 n y C7 H7 CBD sing 90 n n C8 C9 CBD sing 91 n y C8 H8 CBD sing 92 n n C9 C10 CBD doub 93 n y C9 H9 CBD sing 94 n n C10 C11 CBD sing 95 n n C11 O11 CBD doub 96 n n C11 C12 CBD sing 97 n n C12 C13 CBD sing 98 n y C13 C14 CBD doub 99 n y C13 NB CBD sing 100 n n C14 H14 CBD sing 101 n n NB CB5 CBD sing 102 n n NB HNB CBD sing 103 n n CB1 SB CBD sing 104 n n CB1 CB2 CBD doub 105 n y CB1 CB6 CBD sing 106 n y SB O1B CBD doub 107 n n SB O2B CBD doub 108 n n SB O3B CBD sing 109 n n O3B HOB3 CBD sing 110 n n CB2 CB3 CBD sing 111 n y CB2 NC CBD sing 112 n n CB3 CB4 CBD doub 113 n y CB3 HB3 CBD sing 114 n n CB4 CB5 CBD sing 115 n y CB4 HB4 CBD sing 116 n n CB5 CB6 CBD doub 117 n y CB6 HB6 CBD sing 118 n n NC CC6 CBD sing 119 n n NC HNC CBD sing 120 n n NC1 CC2 CBD doub 121 n y NC1 CC6 CBD sing 122 n y CC2 CL CBD sing 123 n n CC2 NC3 CBD sing 124 n y NC3 CC4 CBD doub 125 n y CC4 NC5 CBD sing 126 n y CC4 ND CBD sing 127 n n NC5 CC6 CBD doub 128 n y ND CD2 CBD sing 129 n n ND HND CBD sing 130 n n CD1 SD CBD sing 131 n n CD1 CD2 CBD doub 132 n y CD1 CD6 CBD sing 133 n y SD O1D CBD doub 134 n n SD O2D CBD doub 135 n n SD O3D CBD sing 136 n n O3D HOD3 CBD sing 137 n n CD2 CD3 CBD sing 138 n y CD3 CD4 CBD doub 139 n y CD3 HD3 CBD sing 140 n n CD4 CD5 CBD sing 141 n y CD4 HD4 CBD sing 142 n n CD5 CD6 CBD doub 143 n y CD5 HD5 CBD sing 144 n n CD6 HD6 CBD sing 145 n n # _atom_sites.entry_id 1QRD _atom_sites.fract_transf_matrix[1][1] 0.013889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000631 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 274 1 FAD FAD . D 3 CBD A 1 275 2 CBD CBD . E 4 DQN A 1 276 3 DQN DQN . F 2 FAD B 1 274 1 FAD FAD . G 3 CBD B 1 275 2 CBD CBD . H 4 DQN B 1 276 3 DQN DQN . I 5 HOH A 1 277 1 HOH HOH . I 5 HOH A 2 278 2 HOH HOH . I 5 HOH A 3 279 3 HOH HOH . I 5 HOH A 4 280 4 HOH HOH . I 5 HOH A 5 281 5 HOH HOH . I 5 HOH A 6 282 6 HOH HOH . I 5 HOH A 7 283 7 HOH HOH . I 5 HOH A 8 284 8 HOH HOH . I 5 HOH A 9 285 9 HOH HOH . I 5 HOH A 10 286 10 HOH HOH . I 5 HOH A 11 287 11 HOH HOH . I 5 HOH A 12 288 12 HOH HOH . I 5 HOH A 13 289 13 HOH HOH . I 5 HOH A 14 290 14 HOH HOH . I 5 HOH A 15 291 15 HOH HOH . I 5 HOH A 16 292 16 HOH HOH . I 5 HOH A 17 293 17 HOH HOH . I 5 HOH A 18 294 18 HOH HOH . I 5 HOH A 19 295 19 HOH HOH . I 5 HOH A 20 296 20 HOH HOH . I 5 HOH A 21 297 21 HOH HOH . I 5 HOH A 22 298 22 HOH HOH . I 5 HOH A 23 299 23 HOH HOH . I 5 HOH A 24 300 24 HOH HOH . I 5 HOH A 25 301 15 HOH HOH . J 5 HOH B 1 277 1 HOH HOH . J 5 HOH B 2 278 2 HOH HOH . J 5 HOH B 3 279 3 HOH HOH . J 5 HOH B 4 280 4 HOH HOH . J 5 HOH B 5 281 5 HOH HOH . J 5 HOH B 6 282 6 HOH HOH . J 5 HOH B 7 283 7 HOH HOH . J 5 HOH B 8 284 8 HOH HOH . J 5 HOH B 9 285 9 HOH HOH . J 5 HOH B 10 286 10 HOH HOH . J 5 HOH B 11 287 11 HOH HOH . J 5 HOH B 12 288 12 HOH HOH . J 5 HOH B 13 289 13 HOH HOH . J 5 HOH B 14 290 14 HOH HOH . J 5 HOH B 15 291 16 HOH HOH . J 5 HOH B 16 292 17 HOH HOH . J 5 HOH B 17 293 18 HOH HOH . J 5 HOH B 18 294 19 HOH HOH . J 5 HOH B 19 295 20 HOH HOH . J 5 HOH B 20 296 21 HOH HOH . J 5 HOH B 21 297 22 HOH HOH . J 5 HOH B 22 298 23 HOH HOH . J 5 HOH B 23 299 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CBD . . . D 3 35.419 2.715 16.736 1 26.87 ? C1 CBD 275 A 1 HETATM 2 S SA CBD . . . D 3 33.878 2.573 15.924 1 27.83 ? SA CBD 275 A 1 HETATM 3 O O1A CBD . . . D 3 33.146 1.347 16.384 1 27.75 ? O1A CBD 275 A 1 HETATM 4 O O2A CBD . . . D 3 34.301 2.502 14.52 1 27.34 ? O2A CBD 275 A 1 HETATM 5 O O3A CBD . . . D 3 33.138 3.753 16.453 1 27.31 ? O3A CBD 275 A 1 HETATM 6 C C2 CBD . . . D 3 36.522 1.953 16.298 1 26.47 ? C2 CBD 275 A 1 HETATM 7 N N2 CBD . . . D 3 36.394 1.156 15.002 1 27.39 ? N2 CBD 275 A 1 HETATM 8 C C3 CBD . . . D 3 37.612 1.815 17.164 1 26.55 ? C3 CBD 275 A 1 HETATM 9 C C4 CBD . . . D 3 38.76 0.981 16.851 1 27.32 ? C4 CBD 275 A 1 HETATM 10 O O4 CBD . . . D 3 38.631 0.25 15.865 1 27.62 ? O4 CBD 275 A 1 HETATM 11 C C5 CBD . . . D 3 40.035 0.955 17.572 1 27.33 ? C5 CBD 275 A 1 HETATM 12 C C6 CBD . . . D 3 41.154 0.181 17.175 1 27.06 ? C6 CBD 275 A 1 HETATM 13 C C7 CBD . . . D 3 42.296 0.191 17.977 1 27.5 ? C7 CBD 275 A 1 HETATM 14 C C8 CBD . . . D 3 42.348 0.942 19.148 1 27.4 ? C8 CBD 275 A 1 HETATM 15 C C9 CBD . . . D 3 41.255 1.705 19.547 1 27.09 ? C9 CBD 275 A 1 HETATM 16 C C10 CBD . . . D 3 40.09 1.7 18.764 1 26.77 ? C10 CBD 275 A 1 HETATM 17 C C11 CBD . . . D 3 38.947 2.526 19.058 1 26.56 ? C11 CBD 275 A 1 HETATM 18 O O11 CBD . . . D 3 38.936 3.073 20.146 1 26.29 ? O11 CBD 275 A 1 HETATM 19 C C12 CBD . . . D 3 37.685 2.617 18.324 1 26.41 ? C12 CBD 275 A 1 HETATM 20 C C13 CBD . . . D 3 36.523 3.32 18.779 1 25.64 ? C13 CBD 275 A 1 HETATM 21 C C14 CBD . . . D 3 35.364 3.341 17.987 1 26.05 ? C14 CBD 275 A 1 HETATM 22 N NB CBD . . . D 3 36.512 4.113 20.02 1 24.68 ? NB CBD 275 A 1 HETATM 23 C CB1 CBD . . . D 3 34.211 7.12 20.06 1 24.21 ? CB1 CBD 275 A 1 HETATM 24 S SB CBD . . . D 3 33.781 8.494 18.995 1 24.74 ? SB CBD 275 A 1 HETATM 25 O O1B CBD . . . D 3 32.27 8.527 19.02 1 24.25 ? O1B CBD 275 A 1 HETATM 26 O O2B CBD . . . D 3 34.287 8.127 17.65 1 24.16 ? O2B CBD 275 A 1 HETATM 27 O O3B CBD . . . D 3 34.439 9.75 19.48 1 23.94 ? O3B CBD 275 A 1 HETATM 28 C CB2 CBD . . . D 3 33.505 6.824 21.25 1 23.58 ? CB2 CBD 275 A 1 HETATM 29 C CB3 CBD . . . D 3 33.792 5.667 22.002 1 23.46 ? CB3 CBD 275 A 1 HETATM 30 C CB4 CBD . . . D 3 34.768 4.783 21.602 1 23.49 ? CB4 CBD 275 A 1 HETATM 31 C CB5 CBD . . . D 3 35.49 5.06 20.43 1 23.83 ? CB5 CBD 275 A 1 HETATM 32 C CB6 CBD . . . D 3 35.226 6.221 19.654 1 23.95 ? CB6 CBD 275 A 1 HETATM 33 N NC CBD . . . D 3 32.446 7.768 21.562 1 24.41 ? NC CBD 275 A 1 HETATM 34 N NC1 CBD . . . D 3 32.665 7.553 24.008 1 24.5 ? NC1 CBD 275 A 1 HETATM 35 C CC2 CBD . . . D 3 32.367 7.978 25.262 1 25.49 ? CC2 CBD 275 A 1 HETATM 36 CL CL CBD . . . D 3 33.07 7.071 26.714 1 29.5 ? CL CBD 275 A 1 HETATM 37 N NC3 CBD . . . D 3 31.55 9.079 25.365 1 24.97 ? NC3 CBD 275 A 1 HETATM 38 C CC4 CBD . . . D 3 31.058 9.737 24.287 1 23.97 ? CC4 CBD 275 A 1 HETATM 39 N NC5 CBD . . . D 3 31.376 9.298 23.06 1 23.77 ? NC5 CBD 275 A 1 HETATM 40 C CC6 CBD . . . D 3 32.17 8.21 22.929 1 24.18 ? CC6 CBD 275 A 1 HETATM 41 N ND CBD . . . D 3 30.182 10.895 24.452 1 23.86 ? ND CBD 275 A 1 HETATM 42 C CD1 CBD . . . D 3 29.487 13.053 23.57 1 24.76 ? CD1 CBD 275 A 1 HETATM 43 S SD CBD . . . D 3 30.2 13.718 25.069 1 25.2 ? SD CBD 275 A 1 HETATM 44 O O1D CBD . . . D 3 31.688 13.451 25.095 1 24.36 ? O1D CBD 275 A 1 HETATM 45 O O2D CBD . . . D 3 29.425 13.103 26.187 1 23.61 ? O2D CBD 275 A 1 HETATM 46 O O3D CBD . . . D 3 30.237 15.221 25.141 1 24.96 ? O3D CBD 275 A 1 HETATM 47 C CD2 CBD . . . D 3 29.621 11.644 23.338 1 24.31 ? CD2 CBD 275 A 1 HETATM 48 C CD3 CBD . . . D 3 29.126 11.07 22.126 1 25.01 ? CD3 CBD 275 A 1 HETATM 49 C CD4 CBD . . . D 3 28.524 11.893 21.157 1 25.25 ? CD4 CBD 275 A 1 HETATM 50 C CD5 CBD . . . D 3 28.379 13.285 21.386 1 25.44 ? CD5 CBD 275 A 1 HETATM 51 C CD6 CBD . . . D 3 28.842 13.87 22.58 1 24.67 ? CD6 CBD 275 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #