data_1QRD # _model_server_result.job_id 3DaIKXNRVDgBxXvjI6G22g _model_server_result.datetime_utc '2024-10-19 17:33:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":276}' # _entry.id 1QRD # _exptl.entry_id 1QRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DUROQUINONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.6 _cell.angle_gamma 90 _cell.entry_id 1QRD _cell.length_a 72 _cell.length_b 107 _cell.length_c 88.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1,2 B,F,G,H,J 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 67.989912 0 88.308998 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C10 H12 O2' _chem_comp.formula_weight 164.201 _chem_comp.id DQN _chem_comp.mon_nstd_flag . _chem_comp.name DUROQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DQN doub 159 n n C1 C2 DQN sing 160 n n C1 C6 DQN sing 161 n n C2 C2M DQN sing 162 n n C2 C3 DQN doub 163 n n C2M H2M1 DQN sing 164 n n C2M H2M2 DQN sing 165 n n C2M H2M3 DQN sing 166 n n C3 C3M DQN sing 167 n n C3 C4 DQN sing 168 n n C3M H3M1 DQN sing 169 n n C3M H3M2 DQN sing 170 n n C3M H3M3 DQN sing 171 n n C4 O4 DQN doub 172 n n C4 C5 DQN sing 173 n n C5 C5M DQN sing 174 n n C5 C6 DQN doub 175 n n C5M H5M1 DQN sing 176 n n C5M H5M2 DQN sing 177 n n C5M H5M3 DQN sing 178 n n C6 C6M DQN sing 179 n n C6M H6M1 DQN sing 180 n n C6M H6M2 DQN sing 181 n n C6M H6M3 DQN sing 182 n n # _atom_sites.entry_id 1QRD _atom_sites.fract_transf_matrix[1][1] 0.013889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000631 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 274 1 FAD FAD . D 3 CBD A 1 275 2 CBD CBD . E 4 DQN A 1 276 3 DQN DQN . F 2 FAD B 1 274 1 FAD FAD . G 3 CBD B 1 275 2 CBD CBD . H 4 DQN B 1 276 3 DQN DQN . I 5 HOH A 1 277 1 HOH HOH . I 5 HOH A 2 278 2 HOH HOH . I 5 HOH A 3 279 3 HOH HOH . I 5 HOH A 4 280 4 HOH HOH . I 5 HOH A 5 281 5 HOH HOH . I 5 HOH A 6 282 6 HOH HOH . I 5 HOH A 7 283 7 HOH HOH . I 5 HOH A 8 284 8 HOH HOH . I 5 HOH A 9 285 9 HOH HOH . I 5 HOH A 10 286 10 HOH HOH . I 5 HOH A 11 287 11 HOH HOH . I 5 HOH A 12 288 12 HOH HOH . I 5 HOH A 13 289 13 HOH HOH . I 5 HOH A 14 290 14 HOH HOH . I 5 HOH A 15 291 15 HOH HOH . I 5 HOH A 16 292 16 HOH HOH . I 5 HOH A 17 293 17 HOH HOH . I 5 HOH A 18 294 18 HOH HOH . I 5 HOH A 19 295 19 HOH HOH . I 5 HOH A 20 296 20 HOH HOH . I 5 HOH A 21 297 21 HOH HOH . I 5 HOH A 22 298 22 HOH HOH . I 5 HOH A 23 299 23 HOH HOH . I 5 HOH A 24 300 24 HOH HOH . I 5 HOH A 25 301 15 HOH HOH . J 5 HOH B 1 277 1 HOH HOH . J 5 HOH B 2 278 2 HOH HOH . J 5 HOH B 3 279 3 HOH HOH . J 5 HOH B 4 280 4 HOH HOH . J 5 HOH B 5 281 5 HOH HOH . J 5 HOH B 6 282 6 HOH HOH . J 5 HOH B 7 283 7 HOH HOH . J 5 HOH B 8 284 8 HOH HOH . J 5 HOH B 9 285 9 HOH HOH . J 5 HOH B 10 286 10 HOH HOH . J 5 HOH B 11 287 11 HOH HOH . J 5 HOH B 12 288 12 HOH HOH . J 5 HOH B 13 289 13 HOH HOH . J 5 HOH B 14 290 14 HOH HOH . J 5 HOH B 15 291 16 HOH HOH . J 5 HOH B 16 292 17 HOH HOH . J 5 HOH B 17 293 18 HOH HOH . J 5 HOH B 18 294 19 HOH HOH . J 5 HOH B 19 295 20 HOH HOH . J 5 HOH B 20 296 21 HOH HOH . J 5 HOH B 21 297 22 HOH HOH . J 5 HOH B 22 298 23 HOH HOH . J 5 HOH B 23 299 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DQN . . . E 4 35.004 10.481 29.696 1 41.59 ? C1 DQN 276 A 1 HETATM 2 O O1 DQN . . . E 4 34.904 11.6 29.124 1 41.1 ? O1 DQN 276 A 1 HETATM 3 C C2 DQN . . . E 4 36.014 10.376 30.708 1 40.95 ? C2 DQN 276 A 1 HETATM 4 C C2M DQN . . . E 4 36.722 11.645 31.068 1 39.97 ? C2M DQN 276 A 1 HETATM 5 C C3 DQN . . . E 4 36.134 9.143 31.351 1 41.64 ? C3 DQN 276 A 1 HETATM 6 C C3M DQN . . . E 4 36.937 8.769 32.581 1 41.73 ? C3M DQN 276 A 1 HETATM 7 C C4 DQN . . . E 4 35.316 8.068 30.891 1 42.07 ? C4 DQN 276 A 1 HETATM 8 O O4 DQN . . . E 4 35.528 6.931 31.394 1 42.09 ? O4 DQN 276 A 1 HETATM 9 C C5 DQN . . . E 4 34.312 8.149 29.869 1 42.58 ? C5 DQN 276 A 1 HETATM 10 C C5M DQN . . . E 4 33.417 6.931 29.689 1 42.63 ? C5M DQN 276 A 1 HETATM 11 C C6 DQN . . . E 4 34.118 9.398 29.291 1 42.37 ? C6 DQN 276 A 1 HETATM 12 C C6M DQN . . . E 4 32.975 9.693 28.347 1 42.84 ? C6M DQN 276 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #