data_1QT5 # _model_server_result.job_id 2DTu4naq7-wLyxZtS5SJEw _model_server_result.datetime_utc '2024-11-30 16:53:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qt5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":170}' # _entry.id 1QT5 # _exptl.entry_id 1QT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1QT5 _cell.length_a 61.086 _cell.length_b 61.086 _cell.length_c 96.932 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 129 n n C1 C2 HED sing 130 n n C1 H11 HED sing 131 n n C1 H12 HED sing 132 n n O1 HO1 HED sing 133 n n C2 S3 HED sing 134 n n C2 H21 HED sing 135 n n C2 H22 HED sing 136 n n S3 S4 HED sing 137 n n S4 C5 HED sing 138 n n C5 C6 HED sing 139 n n C5 H51 HED sing 140 n n C5 H52 HED sing 141 n n C6 O6 HED sing 142 n n C6 H61 HED sing 143 n n C6 H62 HED sing 144 n n O6 HO6 HED sing 145 n n # _atom_sites.entry_id 1QT5 _atom_sites.fract_transf_matrix[1][1] 0.01637 _atom_sites.fract_transf_matrix[1][2] 0.009451 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HED A 1 170 170 HED HED . C 3 HOH A 1 201 201 HOH SOL . C 3 HOH A 2 202 202 HOH SOL . C 3 HOH A 3 203 203 HOH SOL . C 3 HOH A 4 204 204 HOH SOL . C 3 HOH A 5 205 205 HOH SOL . C 3 HOH A 6 206 206 HOH SOL . C 3 HOH A 7 207 207 HOH SOL . C 3 HOH A 8 208 208 HOH SOL . C 3 HOH A 9 209 209 HOH SOL . C 3 HOH A 10 210 210 HOH SOL . C 3 HOH A 11 211 211 HOH SOL . C 3 HOH A 12 212 212 HOH SOL . C 3 HOH A 13 213 213 HOH SOL . C 3 HOH A 14 214 214 HOH SOL . C 3 HOH A 15 215 215 HOH SOL . C 3 HOH A 16 216 216 HOH SOL . C 3 HOH A 17 217 217 HOH SOL . C 3 HOH A 18 218 218 HOH SOL . C 3 HOH A 19 219 219 HOH SOL . C 3 HOH A 20 220 220 HOH SOL . C 3 HOH A 21 221 221 HOH SOL . C 3 HOH A 22 222 222 HOH SOL . C 3 HOH A 23 223 223 HOH SOL . C 3 HOH A 24 224 224 HOH SOL . C 3 HOH A 25 225 225 HOH SOL . C 3 HOH A 26 226 226 HOH SOL . C 3 HOH A 27 227 227 HOH SOL . C 3 HOH A 28 228 228 HOH SOL . C 3 HOH A 29 229 229 HOH SOL . C 3 HOH A 30 230 230 HOH SOL . C 3 HOH A 31 231 231 HOH SOL . C 3 HOH A 32 232 232 HOH SOL . C 3 HOH A 33 233 233 HOH SOL . C 3 HOH A 34 234 234 HOH SOL . C 3 HOH A 35 235 235 HOH SOL . C 3 HOH A 36 236 236 HOH SOL . C 3 HOH A 37 237 237 HOH SOL . C 3 HOH A 38 238 238 HOH SOL . C 3 HOH A 39 239 239 HOH SOL . C 3 HOH A 40 240 240 HOH SOL . C 3 HOH A 41 241 241 HOH SOL . C 3 HOH A 42 242 242 HOH SOL . C 3 HOH A 43 243 243 HOH SOL . C 3 HOH A 44 244 244 HOH SOL . C 3 HOH A 45 245 245 HOH SOL . C 3 HOH A 46 246 246 HOH SOL . C 3 HOH A 47 247 247 HOH SOL . C 3 HOH A 48 248 248 HOH SOL . C 3 HOH A 49 249 249 HOH SOL . C 3 HOH A 50 250 250 HOH SOL . C 3 HOH A 51 251 251 HOH SOL . C 3 HOH A 52 252 252 HOH SOL . C 3 HOH A 53 253 253 HOH SOL . C 3 HOH A 54 254 254 HOH SOL . C 3 HOH A 55 255 255 HOH SOL . C 3 HOH A 56 256 256 HOH SOL . C 3 HOH A 57 257 257 HOH SOL . C 3 HOH A 58 258 258 HOH SOL . C 3 HOH A 59 259 259 HOH SOL . C 3 HOH A 60 260 260 HOH SOL . C 3 HOH A 61 261 261 HOH SOL . C 3 HOH A 62 262 262 HOH SOL . C 3 HOH A 63 263 263 HOH SOL . C 3 HOH A 64 264 264 HOH SOL . C 3 HOH A 65 265 265 HOH SOL . C 3 HOH A 66 266 266 HOH SOL . C 3 HOH A 67 267 267 HOH SOL . C 3 HOH A 68 268 268 HOH SOL . C 3 HOH A 69 269 269 HOH SOL . C 3 HOH A 70 270 270 HOH SOL . C 3 HOH A 71 271 271 HOH SOL . C 3 HOH A 72 272 272 HOH SOL . C 3 HOH A 73 273 273 HOH SOL . C 3 HOH A 74 274 274 HOH SOL . C 3 HOH A 75 275 275 HOH SOL . C 3 HOH A 76 276 276 HOH SOL . C 3 HOH A 77 277 277 HOH SOL . C 3 HOH A 78 278 278 HOH SOL . C 3 HOH A 79 279 279 HOH SOL . C 3 HOH A 80 280 280 HOH SOL . C 3 HOH A 81 281 281 HOH SOL . C 3 HOH A 82 282 282 HOH SOL . C 3 HOH A 83 283 283 HOH SOL . C 3 HOH A 84 284 284 HOH SOL . C 3 HOH A 85 285 285 HOH SOL . C 3 HOH A 86 286 286 HOH SOL . C 3 HOH A 87 287 287 HOH SOL . C 3 HOH A 88 288 288 HOH SOL . C 3 HOH A 89 289 289 HOH SOL . C 3 HOH A 90 290 290 HOH SOL . C 3 HOH A 91 291 291 HOH SOL . C 3 HOH A 92 292 292 HOH SOL . C 3 HOH A 93 293 293 HOH SOL . C 3 HOH A 94 294 294 HOH SOL . C 3 HOH A 95 295 295 HOH SOL . C 3 HOH A 96 296 296 HOH SOL . C 3 HOH A 97 297 297 HOH SOL . C 3 HOH A 98 298 298 HOH SOL . C 3 HOH A 99 299 299 HOH SOL . C 3 HOH A 100 300 300 HOH SOL . C 3 HOH A 101 301 301 HOH SOL . C 3 HOH A 102 302 302 HOH SOL . C 3 HOH A 103 303 303 HOH SOL . C 3 HOH A 104 304 304 HOH SOL . C 3 HOH A 105 305 305 HOH SOL . C 3 HOH A 106 306 306 HOH SOL . C 3 HOH A 107 307 307 HOH SOL . C 3 HOH A 108 308 308 HOH SOL . C 3 HOH A 109 309 309 HOH SOL . C 3 HOH A 110 310 310 HOH SOL . C 3 HOH A 111 311 311 HOH SOL . C 3 HOH A 112 312 312 HOH SOL . C 3 HOH A 113 313 313 HOH SOL . C 3 HOH A 114 314 314 HOH SOL . C 3 HOH A 115 315 315 HOH SOL . C 3 HOH A 116 316 316 HOH SOL . C 3 HOH A 117 317 317 HOH SOL . C 3 HOH A 118 318 318 HOH SOL . C 3 HOH A 119 319 319 HOH SOL . C 3 HOH A 120 320 320 HOH SOL . C 3 HOH A 121 321 321 HOH SOL . C 3 HOH A 122 322 322 HOH SOL . C 3 HOH A 123 323 323 HOH SOL . C 3 HOH A 124 324 324 HOH SOL . C 3 HOH A 125 325 325 HOH SOL . C 3 HOH A 126 327 327 HOH SOL . C 3 HOH A 127 328 328 HOH SOL . C 3 HOH A 128 330 330 HOH SOL . C 3 HOH A 129 331 331 HOH SOL . C 3 HOH A 130 332 332 HOH SOL . C 3 HOH A 131 333 333 HOH SOL . C 3 HOH A 132 334 334 HOH SOL . C 3 HOH A 133 335 335 HOH SOL . C 3 HOH A 134 336 336 HOH SOL . C 3 HOH A 135 337 337 HOH SOL . C 3 HOH A 136 338 338 HOH SOL . C 3 HOH A 137 340 340 HOH SOL . C 3 HOH A 138 341 341 HOH SOL . C 3 HOH A 139 342 342 HOH SOL . C 3 HOH A 140 344 344 HOH SOL . C 3 HOH A 141 345 345 HOH SOL . C 3 HOH A 142 348 348 HOH SOL . C 3 HOH A 143 349 349 HOH SOL . C 3 HOH A 144 351 351 HOH SOL . C 3 HOH A 145 352 352 HOH SOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . B 2 33.661 -1.477 12.701 0.5 28.53 ? C1 HED 170 A 1 HETATM 2 O O1 HED . . . B 2 33.873 -0.702 11.538 0.5 27.48 ? O1 HED 170 A 1 HETATM 3 C C2 HED . . . B 2 32.787 -0.564 13.596 0.5 39.02 ? C2 HED 170 A 1 HETATM 4 S S3 HED . . . B 2 31.611 -1.317 14.76 0.5 44.57 ? S3 HED 170 A 1 HETATM 5 S S4 HED . . . B 2 32.538 -1.009 16.609 0.5 64.27 ? S4 HED 170 A 1 HETATM 6 C C5 HED . . . B 2 32.454 0.742 17.165 0.5 57.18 ? C5 HED 170 A 1 HETATM 7 C C6 HED . . . B 2 32.536 0.968 18.707 0.5 44.27 ? C6 HED 170 A 1 HETATM 8 O O6 HED . . . B 2 33.779 1.501 19.202 0.5 25.77 ? O6 HED 170 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #