data_1QV4 # _model_server_result.job_id 2fmsKfUn0gJLyzoeYE_lAg _model_server_result.datetime_utc '2024-10-18 14:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 1QV4 # _exptl.entry_id 1QV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 465.593 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-(3-METHYL-4-DIMETHYLAMINOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QV4 _cell.length_a 25.44 _cell.length_b 40.64 _cell.length_c 66.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C28 H31 N7' _chem_comp.formula_weight 465.593 _chem_comp.id MBB _chem_comp.mon_nstd_flag . _chem_comp.name "2'-(3-METHYL-4-DIMETHYLAMINOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C2 MBB doub 152 n y C C4 MBB sing 153 n y C N MBB sing 154 n n C1 C3 MBB doub 155 n y C1 C5 MBB sing 156 n y C1 C6 MBB sing 157 n y C2 C3 MBB sing 158 n y C2 H2 MBB sing 159 n n C3 H3 MBB sing 160 n n C4 C5 MBB doub 161 n y C4 H4 MBB sing 162 n n C5 C25 MBB sing 163 n n N CN1 MBB sing 164 n n N CN2 MBB sing 165 n n C6 N1 MBB doub 166 n y C6 N2 MBB sing 167 n y C7 C8 MBB doub 168 n y C7 C12 MBB sing 169 n y C7 N1 MBB sing 170 n y C8 C9 MBB sing 171 n y C8 N2 MBB sing 172 n y C9 C10 MBB doub 173 n y C9 H9 MBB sing 174 n n C10 C11 MBB sing 175 n y C10 H10 MBB sing 176 n n C11 C12 MBB doub 177 n y C11 C13 MBB sing 178 n y C12 H12 MBB sing 179 n n N2 HN2 MBB sing 180 n n C13 N3 MBB doub 181 n y C13 N4 MBB sing 182 n y C14 C15 MBB doub 183 n y C14 N3 MBB sing 184 n y C14 C19 MBB sing 185 n y C15 C16 MBB sing 186 n y C15 N4 MBB sing 187 n y C16 C17 MBB doub 188 n y C16 H16 MBB sing 189 n n C17 C18 MBB sing 190 n y C17 H17 MBB sing 191 n n C18 C19 MBB doub 192 n y C18 N5 MBB sing 193 n n N4 HN4 MBB sing 194 n n C19 H19 MBB sing 195 n n N5 C20 MBB sing 196 n n N5 C23 MBB sing 197 n n N6 C21 MBB sing 198 n n N6 C22 MBB sing 199 n n N6 C24 MBB sing 200 n n C20 C21 MBB sing 201 n n C20 H201 MBB sing 202 n n C20 H202 MBB sing 203 n n C21 H211 MBB sing 204 n n C21 H212 MBB sing 205 n n C22 C23 MBB sing 206 n n C22 H221 MBB sing 207 n n C22 H222 MBB sing 208 n n C23 H231 MBB sing 209 n n C23 H232 MBB sing 210 n n C24 H241 MBB sing 211 n n C24 H242 MBB sing 212 n n C24 H243 MBB sing 213 n n CN1 HN11 MBB sing 214 n n CN1 HN12 MBB sing 215 n n CN1 HN13 MBB sing 216 n n CN2 HN21 MBB sing 217 n n CN2 HN22 MBB sing 218 n n CN2 HN23 MBB sing 219 n n C25 H251 MBB sing 220 n n C25 H252 MBB sing 221 n n C25 H253 MBB sing 222 n n # _atom_sites.entry_id 1QV4 _atom_sites.fract_transf_matrix[1][1] 0.039308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MBB B 1 25 25 MBB MBB . D 3 HOH A 1 28 28 HOH HOH . D 3 HOH A 2 31 31 HOH HOH . D 3 HOH A 3 33 33 HOH HOH . E 3 HOH B 1 26 26 HOH HOH . E 3 HOH B 2 27 27 HOH HOH . E 3 HOH B 3 29 29 HOH HOH . E 3 HOH B 4 30 30 HOH HOH . E 3 HOH B 5 32 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C MBB . . . C 2 8.641 19.781 13.507 1 39.36 ? C MBB 25 B 1 HETATM 2 C C1 MBB . . . C 2 8.649 21.555 10.989 1 36.41 ? C1 MBB 25 B 1 HETATM 3 C C2 MBB . . . C 2 9.813 20.238 12.816 1 38.1 ? C2 MBB 25 B 1 HETATM 4 C C3 MBB . . . C 2 9.812 21.087 11.611 1 36.79 ? C3 MBB 25 B 1 HETATM 5 C C4 MBB . . . C 2 7.438 20.31 12.806 1 38.67 ? C4 MBB 25 B 1 HETATM 6 C C5 MBB . . . C 2 7.424 21.159 11.6 1 37.19 ? C5 MBB 25 B 1 HETATM 7 N N MBB . . . C 2 8.64 18.892 14.755 1 41.16 ? N MBB 25 B 1 HETATM 8 C C6 MBB . . . C 2 8.78 22.415 9.754 1 34.77 ? C6 MBB 25 B 1 HETATM 9 C C7 MBB . . . C 2 9.68 23.322 7.857 1 36.31 ? C7 MBB 25 B 1 HETATM 10 C C8 MBB . . . C 2 8.421 23.869 8.135 1 34.16 ? C8 MBB 25 B 1 HETATM 11 C C9 MBB . . . C 2 7.812 24.895 7.273 1 35.07 ? C9 MBB 25 B 1 HETATM 12 C C10 MBB . . . C 2 8.585 25.309 6.116 1 37.19 ? C10 MBB 25 B 1 HETATM 13 C C11 MBB . . . C 2 9.863 24.737 5.852 1 41.07 ? C11 MBB 25 B 1 HETATM 14 C C12 MBB . . . C 2 10.413 23.757 6.704 1 38.36 ? C12 MBB 25 B 1 HETATM 15 N N1 MBB . . . C 2 9.887 22.381 8.925 1 36.85 ? N1 MBB 25 B 1 HETATM 16 N N2 MBB . . . C 2 7.936 23.297 9.268 1 33.68 ? N2 MBB 25 B 1 HETATM 17 C C13 MBB . . . C 2 10.598 25.172 4.682 1 44.12 ? C13 MBB 25 B 1 HETATM 18 C C14 MBB . . . C 2 12.146 25.237 3.045 1 48.5 ? C14 MBB 25 B 1 HETATM 19 C C15 MBB . . . C 2 11.223 26.303 2.955 1 48.86 ? C15 MBB 25 B 1 HETATM 20 C C16 MBB . . . C 2 11.295 27.304 1.915 1 51.78 ? C16 MBB 25 B 1 HETATM 21 C C17 MBB . . . C 2 12.395 27.161 0.941 1 54.79 ? C17 MBB 25 B 1 HETATM 22 C C18 MBB . . . C 2 13.364 26.045 1.041 1 56.85 ? C18 MBB 25 B 1 HETATM 23 N N3 MBB . . . C 2 11.719 24.525 4.162 1 46.44 ? N3 MBB 25 B 1 HETATM 24 N N4 MBB . . . C 2 10.356 26.195 3.939 1 45.59 ? N4 MBB 25 B 1 HETATM 25 C C19 MBB . . . C 2 13.231 25.097 2.086 1 52.59 ? C19 MBB 25 B 1 HETATM 26 N N5 MBB . . . C 2 14.459 25.938 0.043 1 60.64 ? N5 MBB 25 B 1 HETATM 27 N N6 MBB . . . C 2 16.74 25.745 -1.94 1 66.82 ? N6 MBB 25 B 1 HETATM 28 C C20 MBB . . . C 2 15.68 24.998 0.247 1 62.59 ? C20 MBB 25 B 1 HETATM 29 C C21 MBB . . . C 2 16.302 24.575 -1.13 1 65.56 ? C21 MBB 25 B 1 HETATM 30 C C22 MBB . . . C 2 15.507 26.671 -2.223 1 65.69 ? C22 MBB 25 B 1 HETATM 31 C C23 MBB . . . C 2 14.874 27.137 -0.891 1 63.34 ? C23 MBB 25 B 1 HETATM 32 C C24 MBB . . . C 2 17.251 25.375 -3.193 1 68.14 ? C24 MBB 25 B 1 HETATM 33 C CN1 MBB . . . C 2 7.63 18.235 15.708 1 42.1 ? CN1 MBB 25 B 1 HETATM 34 C CN2 MBB . . . C 2 9.637 18.198 15.69 1 41.03 ? CN2 MBB 25 B 1 HETATM 35 C C25 MBB . . . C 2 6.048 21.586 11.043 1 37.22 ? C25 MBB 25 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #