data_1QVJ # _model_server_result.job_id qGy1OA9WjaDlhSaJ1J0DGg _model_server_result.datetime_utc '2024-11-18 10:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":553}' # _entry.id 1QVJ # _exptl.entry_id 1QVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QVJ _cell.length_a 78.9 _cell.length_b 87.455 _cell.length_c 120.308 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 149 A CYS 207 1_555 A SG CYS 289 A CYS 347 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? covale ? covale1 A C ILE 129 A ILE 187 1_555 A N MSE 130 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 130 A MSE 188 1_555 A N HIS 131 A HIS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C GLY 157 A GLY 215 1_555 A N MSE 158 A MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 158 A MSE 216 1_555 A N VAL 159 A VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C TRP 221 A TRP 279 1_555 A N MSE 222 A MSE 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 222 A MSE 280 1_555 A N GLU 223 A GLU 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C ILE 236 A ILE 294 1_555 A N MSE 237 A MSE 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 237 A MSE 295 1_555 A N ASP 238 A ASP 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C LEU 240 A LEU 298 1_555 A N MSE 241 A MSE 299 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C LEU 240 A LEU 298 1_555 A N MSE 241 A MSE 299 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C MSE 241 A MSE 299 1_555 A N LEU 242 A LEU 300 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 241 A MSE 299 1_555 A N LEU 242 A LEU 300 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A O GLY 156 A GLY 214 1_555 G MG MG . A MG 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc2 A OE2 GLU 172 A GLU 230 1_555 H MG MG . A MG 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc3 K O HOH . A HOH 443 1_555 G MG MG . A MG 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc4 K O HOH . A HOH 443 1_555 H MG MG . A MG 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc5 K O HOH . A HOH 445 1_555 H MG MG . A MG 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc6 K O HOH . A HOH 514 1_555 H MG MG . A MG 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc7 K O HOH . A HOH 549 1_555 G MG MG . A MG 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc8 J O3X RP5 . A RP5 554 1_555 G MG MG . A MG 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 382 n n C C2 TRS sing 383 n n C C3 TRS sing 384 n n C N TRS sing 385 n n C1 O1 TRS sing 386 n n C1 H11 TRS sing 387 n n C1 H12 TRS sing 388 n n C2 O2 TRS sing 389 n n C2 H21 TRS sing 390 n n C2 H22 TRS sing 391 n n C3 O3 TRS sing 392 n n C3 H31 TRS sing 393 n n C3 H32 TRS sing 394 n n N HN1 TRS sing 395 n n N HN2 TRS sing 396 n n N HN3 TRS sing 397 n n O1 HO1 TRS sing 398 n n O2 HO2 TRS sing 399 n n O3 HO3 TRS sing 400 n n # _atom_sites.entry_id 1QVJ _atom_sites.fract_transf_matrix[1][1] 0.012674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 555 555 SO4 SO4 . C 2 SO4 A 1 556 556 SO4 SO4 . D 2 SO4 A 1 557 557 SO4 SO4 . E 2 SO4 A 1 558 558 SO4 SO4 . F 2 SO4 A 1 559 559 SO4 SO4 . G 3 MG A 1 560 560 MG MG . H 3 MG A 1 561 561 MG MG . I 4 TRS A 1 553 553 TRS TRS . J 5 RP5 A 1 554 554 RP5 RP5 . K 6 HOH A 1 351 351 HOH TIP . K 6 HOH A 2 352 352 HOH TIP . K 6 HOH A 3 353 353 HOH TIP . K 6 HOH A 4 354 354 HOH TIP . K 6 HOH A 5 355 355 HOH TIP . K 6 HOH A 6 356 356 HOH TIP . K 6 HOH A 7 357 357 HOH TIP . K 6 HOH A 8 358 358 HOH TIP . K 6 HOH A 9 359 359 HOH TIP . K 6 HOH A 10 360 360 HOH TIP . K 6 HOH A 11 361 361 HOH TIP . K 6 HOH A 12 362 362 HOH TIP . K 6 HOH A 13 363 363 HOH TIP . K 6 HOH A 14 364 364 HOH TIP . K 6 HOH A 15 365 365 HOH TIP . K 6 HOH A 16 366 366 HOH TIP . K 6 HOH A 17 367 367 HOH TIP . K 6 HOH A 18 368 368 HOH TIP . K 6 HOH A 19 369 369 HOH TIP . K 6 HOH A 20 370 370 HOH TIP . K 6 HOH A 21 371 371 HOH TIP . K 6 HOH A 22 372 372 HOH TIP . K 6 HOH A 23 373 373 HOH TIP . K 6 HOH A 24 374 374 HOH TIP . K 6 HOH A 25 375 375 HOH TIP . K 6 HOH A 26 376 376 HOH TIP . K 6 HOH A 27 377 377 HOH TIP . K 6 HOH A 28 378 378 HOH TIP . K 6 HOH A 29 379 379 HOH TIP . K 6 HOH A 30 380 380 HOH TIP . K 6 HOH A 31 381 381 HOH TIP . K 6 HOH A 32 382 382 HOH TIP . K 6 HOH A 33 383 383 HOH TIP . K 6 HOH A 34 384 384 HOH TIP . K 6 HOH A 35 385 385 HOH TIP . K 6 HOH A 36 386 386 HOH TIP . K 6 HOH A 37 387 387 HOH TIP . K 6 HOH A 38 388 388 HOH TIP . K 6 HOH A 39 389 389 HOH TIP . K 6 HOH A 40 390 390 HOH TIP . K 6 HOH A 41 391 391 HOH TIP . K 6 HOH A 42 392 392 HOH TIP . K 6 HOH A 43 393 393 HOH TIP . K 6 HOH A 44 394 394 HOH TIP . K 6 HOH A 45 395 395 HOH TIP . K 6 HOH A 46 396 396 HOH TIP . K 6 HOH A 47 397 397 HOH TIP . K 6 HOH A 48 398 398 HOH TIP . K 6 HOH A 49 399 399 HOH TIP . K 6 HOH A 50 400 400 HOH TIP . K 6 HOH A 51 401 401 HOH TIP . K 6 HOH A 52 402 402 HOH TIP . K 6 HOH A 53 403 403 HOH TIP . K 6 HOH A 54 404 404 HOH TIP . K 6 HOH A 55 405 405 HOH TIP . K 6 HOH A 56 406 406 HOH TIP . K 6 HOH A 57 407 407 HOH TIP . K 6 HOH A 58 408 408 HOH TIP . K 6 HOH A 59 409 409 HOH TIP . K 6 HOH A 60 410 410 HOH TIP . K 6 HOH A 61 411 411 HOH TIP . K 6 HOH A 62 412 412 HOH TIP . K 6 HOH A 63 413 413 HOH TIP . K 6 HOH A 64 414 414 HOH TIP . K 6 HOH A 65 415 415 HOH TIP . K 6 HOH A 66 416 416 HOH TIP . K 6 HOH A 67 417 417 HOH TIP . K 6 HOH A 68 418 418 HOH TIP . K 6 HOH A 69 419 419 HOH TIP . K 6 HOH A 70 420 420 HOH TIP . K 6 HOH A 71 421 421 HOH TIP . K 6 HOH A 72 422 422 HOH TIP . K 6 HOH A 73 423 423 HOH TIP . K 6 HOH A 74 424 424 HOH TIP . K 6 HOH A 75 425 425 HOH TIP . K 6 HOH A 76 426 426 HOH TIP . K 6 HOH A 77 427 427 HOH TIP . K 6 HOH A 78 428 428 HOH TIP . K 6 HOH A 79 429 429 HOH TIP . K 6 HOH A 80 430 430 HOH TIP . K 6 HOH A 81 431 431 HOH TIP . K 6 HOH A 82 432 432 HOH TIP . K 6 HOH A 83 433 433 HOH TIP . K 6 HOH A 84 434 434 HOH TIP . K 6 HOH A 85 435 435 HOH TIP . K 6 HOH A 86 436 436 HOH TIP . K 6 HOH A 87 437 437 HOH TIP . K 6 HOH A 88 438 438 HOH TIP . K 6 HOH A 89 439 439 HOH TIP . K 6 HOH A 90 440 440 HOH TIP . K 6 HOH A 91 441 441 HOH TIP . K 6 HOH A 92 442 442 HOH TIP . K 6 HOH A 93 443 443 HOH TIP . K 6 HOH A 94 444 444 HOH TIP . K 6 HOH A 95 445 445 HOH TIP . K 6 HOH A 96 446 446 HOH TIP . K 6 HOH A 97 447 447 HOH TIP . K 6 HOH A 98 448 448 HOH TIP . K 6 HOH A 99 449 449 HOH TIP . K 6 HOH A 100 450 450 HOH TIP . K 6 HOH A 101 451 451 HOH TIP . K 6 HOH A 102 452 452 HOH TIP . K 6 HOH A 103 453 453 HOH TIP . K 6 HOH A 104 454 454 HOH TIP . K 6 HOH A 105 455 455 HOH TIP . K 6 HOH A 106 456 456 HOH TIP . K 6 HOH A 107 457 457 HOH TIP . K 6 HOH A 108 458 458 HOH TIP . K 6 HOH A 109 459 459 HOH TIP . K 6 HOH A 110 460 460 HOH TIP . K 6 HOH A 111 461 461 HOH TIP . K 6 HOH A 112 462 462 HOH TIP . K 6 HOH A 113 463 463 HOH TIP . K 6 HOH A 114 464 464 HOH TIP . K 6 HOH A 115 465 465 HOH TIP . K 6 HOH A 116 466 466 HOH TIP . K 6 HOH A 117 467 467 HOH TIP . K 6 HOH A 118 468 468 HOH TIP . K 6 HOH A 119 469 469 HOH TIP . K 6 HOH A 120 470 470 HOH TIP . K 6 HOH A 121 471 471 HOH TIP . K 6 HOH A 122 472 472 HOH TIP . K 6 HOH A 123 473 473 HOH TIP . K 6 HOH A 124 474 474 HOH TIP . K 6 HOH A 125 475 475 HOH TIP . K 6 HOH A 126 476 476 HOH TIP . K 6 HOH A 127 477 477 HOH TIP . K 6 HOH A 128 478 478 HOH TIP . K 6 HOH A 129 479 479 HOH TIP . K 6 HOH A 130 480 480 HOH TIP . K 6 HOH A 131 481 481 HOH TIP . K 6 HOH A 132 482 482 HOH TIP . K 6 HOH A 133 483 483 HOH TIP . K 6 HOH A 134 484 484 HOH TIP . K 6 HOH A 135 485 485 HOH TIP . K 6 HOH A 136 486 486 HOH TIP . K 6 HOH A 137 487 487 HOH TIP . K 6 HOH A 138 488 488 HOH TIP . K 6 HOH A 139 489 489 HOH TIP . K 6 HOH A 140 490 490 HOH TIP . K 6 HOH A 141 491 491 HOH TIP . K 6 HOH A 142 492 492 HOH TIP . K 6 HOH A 143 493 493 HOH TIP . K 6 HOH A 144 494 494 HOH TIP . K 6 HOH A 145 495 495 HOH TIP . K 6 HOH A 146 496 496 HOH TIP . K 6 HOH A 147 497 497 HOH TIP . K 6 HOH A 148 498 498 HOH TIP . K 6 HOH A 149 499 499 HOH TIP . K 6 HOH A 150 500 500 HOH TIP . K 6 HOH A 151 501 501 HOH TIP . K 6 HOH A 152 502 502 HOH TIP . K 6 HOH A 153 503 503 HOH TIP . K 6 HOH A 154 504 504 HOH TIP . K 6 HOH A 155 505 505 HOH TIP . K 6 HOH A 156 506 506 HOH TIP . K 6 HOH A 157 507 507 HOH TIP . K 6 HOH A 158 508 508 HOH TIP . K 6 HOH A 159 509 509 HOH TIP . K 6 HOH A 160 510 510 HOH TIP . K 6 HOH A 161 511 511 HOH TIP . K 6 HOH A 162 512 512 HOH TIP . K 6 HOH A 163 513 513 HOH TIP . K 6 HOH A 164 514 514 HOH TIP . K 6 HOH A 165 515 515 HOH TIP . K 6 HOH A 166 516 516 HOH TIP . K 6 HOH A 167 517 517 HOH TIP . K 6 HOH A 168 518 518 HOH TIP . K 6 HOH A 169 519 519 HOH TIP . K 6 HOH A 170 520 520 HOH TIP . K 6 HOH A 171 521 521 HOH TIP . K 6 HOH A 172 522 522 HOH TIP . K 6 HOH A 173 523 523 HOH TIP . K 6 HOH A 174 524 524 HOH TIP . K 6 HOH A 175 525 525 HOH TIP . K 6 HOH A 176 526 526 HOH TIP . K 6 HOH A 177 527 527 HOH TIP . K 6 HOH A 178 528 528 HOH TIP . K 6 HOH A 179 529 529 HOH TIP . K 6 HOH A 180 530 530 HOH TIP . K 6 HOH A 181 531 531 HOH TIP . K 6 HOH A 182 532 532 HOH TIP . K 6 HOH A 183 533 533 HOH TIP . K 6 HOH A 184 534 534 HOH TIP . K 6 HOH A 185 535 535 HOH TIP . K 6 HOH A 186 536 536 HOH TIP . K 6 HOH A 187 537 537 HOH TIP . K 6 HOH A 188 538 538 HOH TIP . K 6 HOH A 189 539 539 HOH TIP . K 6 HOH A 190 540 540 HOH TIP . K 6 HOH A 191 541 541 HOH TIP . K 6 HOH A 192 542 542 HOH TIP . K 6 HOH A 193 543 543 HOH TIP . K 6 HOH A 194 544 544 HOH TIP . K 6 HOH A 195 545 545 HOH TIP . K 6 HOH A 196 546 546 HOH TIP . K 6 HOH A 197 547 547 HOH TIP . K 6 HOH A 198 548 548 HOH TIP . K 6 HOH A 199 549 549 HOH TIP . K 6 HOH A 200 550 550 HOH TIP . K 6 HOH A 201 551 551 HOH TIP . K 6 HOH A 202 552 552 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . I 4 57.173 27.697 40.012 1 36.34 ? C TRS 553 A 1 HETATM 2 C C1 TRS . . . I 4 56.301 26.726 39.059 1 34.01 ? C1 TRS 553 A 1 HETATM 3 C C2 TRS . . . I 4 56.481 27.725 41.449 1 37.16 ? C2 TRS 553 A 1 HETATM 4 C C3 TRS . . . I 4 57.145 29.164 39.544 1 34.94 ? C3 TRS 553 A 1 HETATM 5 N N TRS . . . I 4 58.491 27.107 40.05 1 35.56 ? N TRS 553 A 1 HETATM 6 O O1 TRS . . . I 4 56.439 25.394 39.626 1 41.74 ? O1 TRS 553 A 1 HETATM 7 O O2 TRS . . . I 4 55.238 26.988 41.501 1 40.76 ? O2 TRS 553 A 1 HETATM 8 O O3 TRS . . . I 4 56.332 29.448 38.368 1 29.47 ? O3 TRS 553 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 99 _model_server_stats.create_model_time_ms 74 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #