data_1QVN
#
_model_server_result.job_id            55pfbC4EVPULErs0gD7orA 
_model_server_result.datetime_utc      '2024-12-27 05:09:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1qvn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    1QVN 
#
_exptl.entry_id    1QVN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              685.644 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-GUANIDINO-4-METHYL-PENTANOIC ACID [2-(4-{5-[4-(4-ACETYLAMINO-BENZYLOXY)-2,3-DICHLORO-PHENYL]-2-METHYL-2H-PYRAZOL-3-YL}-PIPERIDIN-1-YL)-2-OXO-ETHYL]-AMIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1QVN 
_cell.length_a            53.514 
_cell.length_b            85.134 
_cell.length_c            122.141 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1QVN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,J,K 1 1 
B,D,G,H,I,L 2 1 
A,E,F 3 2 
C,J,K 3 3 
B,D,G,H,I,L 3 1 
A,E,F 4 1 
C,J,K 4 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_654 -x+3/2,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 80.271 0 -61.0705 
3 'crystal symmetry operation' 2_554 -x+1/2,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 26.757 0 -61.0705 
4 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 53.514 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 58 A CYS 58 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 B SG CYS 58 B CYS 58 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 58 C CYS 58 1_555 C SG CYS 105 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 D SG CYS 58 D CYS 58 1_555 D SG CYS 105 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A NE2 HIS 16 A HIS 16 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc2 E ZN ZN . A ZN 701 1_555 C NE2 HIS 16 C HIS 16 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc3 B OE2 GLU 68 B GLU 68 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc4 B OE2 GLU 95 B GLU 95 4_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc5 G ZN ZN . B ZN 601 1_555 D NE2 HIS 16 D HIS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc6 C OE1 GLU 68 C GLU 68 1_555 J ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc7 C OE2 GLU 95 C GLU 95 4_556 J ZN ZN . C ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? 
#
_chem_comp.formula           'C33 H42 Cl2 N8 O4' 
_chem_comp.formula_weight    685.644 
_chem_comp.id                FRI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-GUANIDINO-4-METHYL-PENTANOIC ACID [2-(4-{5-[4-(4-ACETYLAMINO-BENZYLOXY)-2,3-DICHLORO-PHENYL]-2-METHYL-2H-PYRAZOL-3-YL}-PIPERIDIN-1-YL)-2-OXO-ETHYL]-AMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SP4160 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O47 C30 FRI doub 83 n n 
C30 C29 FRI sing 84 n n 
C30 N2 FRI sing 85 n n 
C29 N3 FRI sing 86 n n 
C29 H291 FRI sing 87 n n 
C29 H292 FRI sing 88 n n 
N3 C27 FRI sing 89 n n 
N3 HN3 FRI sing 90 n n 
C27 O46 FRI doub 91 n n 
C27 C26 FRI sing 92 n n 
C26 C41 FRI sing 93 n n 
C26 N7 FRI sing 94 n n 
C26 H26 FRI sing 95 n n 
C41 C32 FRI sing 96 n n 
C41 H411 FRI sing 97 n n 
C41 H412 FRI sing 98 n n 
C32 C37 FRI sing 99 n n 
C32 C36 FRI sing 100 n n 
C32 H32 FRI sing 101 n n 
C37 H371 FRI sing 102 n n 
C37 H372 FRI sing 103 n n 
C37 H373 FRI sing 104 n n 
C36 H361 FRI sing 105 n n 
C36 H362 FRI sing 106 n n 
C36 H363 FRI sing 107 n n 
N7 C24 FRI sing 108 n n 
N7 HN7 FRI sing 109 n n 
C24 N5 FRI doub 110 n n 
C24 N4 FRI sing 111 n n 
N5 HN5 FRI sing 112 n n 
N4 HN41 FRI sing 113 n n 
N4 HN42 FRI sing 114 n n 
N2 C31 FRI sing 115 n n 
N2 C43 FRI sing 116 n n 
C31 C39 FRI sing 117 n n 
C31 H311 FRI sing 118 n n 
C31 H312 FRI sing 119 n n 
C39 C19 FRI sing 120 n n 
C39 H391 FRI sing 121 n n 
C39 H392 FRI sing 122 n n 
C19 C21 FRI sing 123 n n 
C19 C23 FRI sing 124 n n 
C19 H19 FRI sing 125 n n 
C21 C43 FRI sing 126 n n 
C21 H211 FRI sing 127 n n 
C21 H212 FRI sing 128 n n 
C43 H431 FRI sing 129 n n 
C43 H432 FRI sing 130 n n 
C23 N8 FRI sing 131 n y 
C23 C13 FRI doub 132 n y 
N8 C38 FRI sing 133 n n 
N8 N6 FRI sing 134 n y 
C38 H381 FRI sing 135 n n 
C38 H382 FRI sing 136 n n 
C38 H383 FRI sing 137 n n 
N6 C14 FRI doub 138 n y 
C13 C14 FRI sing 139 n y 
C13 H13 FRI sing 140 n n 
C14 C11 FRI sing 141 n y 
C11 C15 FRI doub 142 n y 
C11 C34 FRI sing 143 n y 
C15 C17 FRI sing 144 n y 
C15 H15 FRI sing 145 n n 
C17 C20 FRI doub 146 n y 
C17 H17 FRI sing 147 n n 
C20 C33 FRI sing 148 n y 
C20 O45 FRI sing 149 n n 
C33 C34 FRI doub 150 n y 
C33 CL9 FRI sing 151 n n 
C34 CL10 FRI sing 152 n n 
O45 C40 FRI sing 153 n n 
C40 C22 FRI sing 154 n n 
C40 H401 FRI sing 155 n n 
C40 H402 FRI sing 156 n n 
C22 C28 FRI doub 157 n y 
C22 C16 FRI sing 158 n y 
C28 C25 FRI sing 159 n y 
C28 H28 FRI sing 160 n n 
C25 C35 FRI doub 161 n y 
C25 H25 FRI sing 162 n n 
C35 C18 FRI sing 163 n y 
C35 N1 FRI sing 164 n n 
C18 C16 FRI doub 165 n y 
C18 H18 FRI sing 166 n n 
C16 H16 FRI sing 167 n n 
N1 C12 FRI sing 168 n n 
N1 HN1 FRI sing 169 n n 
C12 O44 FRI doub 170 n n 
C12 C42 FRI sing 171 n n 
C42 H421 FRI sing 172 n n 
C42 H422 FRI sing 173 n n 
C42 H423 FRI sing 174 n n 
#
_atom_sites.entry_id                     1QVN 
_atom_sites.fract_transf_matrix[1][1]    0.018687 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008187 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 701 1 ZN ZN . 
F 3 FRI A 1 201 1 FRI FRG . 
G 2 ZN B 1 601 1 ZN ZN . 
H 2 ZN B 1 801 1 ZN ZN . 
I 3 FRI B 1 301 1 FRI FRG . 
J 2 ZN C 1 901 1 ZN ZN . 
K 3 FRI C 1 401 1 FRI FRG . 
L 3 FRI D 1 501 1 FRI FRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O47 FRI . . . K 3 12.503 19.662 61.489 1 60.39 ? O47 FRI 401 C 1 
HETATM 2 C C30 FRI . . . K 3 12.056 18.784 60.764 1 62.35 ? C30 FRI 401 C 1 
HETATM 3 C C29 FRI . . . K 3 10.853 19.063 59.888 1 62.33 ? C29 FRI 401 C 1 
HETATM 4 N N3 FRI . . . K 3 10.298 20.388 60.097 1 63.07 ? N3 FRI 401 C 1 
HETATM 5 C C27 FRI . . . K 3 10.058 21.223 59.088 1 66.36 ? C27 FRI 401 C 1 
HETATM 6 O O46 FRI . . . K 3 9.728 20.848 57.975 1 67.88 ? O46 FRI 401 C 1 
HETATM 7 C C26 FRI . . . K 3 10.211 22.686 59.384 1 67.61 ? C26 FRI 401 C 1 
HETATM 8 C C41 FRI . . . K 3 11.5 23.195 58.74 1 73.63 ? C41 FRI 401 C 1 
HETATM 9 C C32 FRI . . . K 3 11.744 24.693 58.93 1 76.42 ? C32 FRI 401 C 1 
HETATM 10 C C37 FRI . . . K 3 12.934 25.144 58.09 1 81.91 ? C37 FRI 401 C 1 
HETATM 11 C C36 FRI . . . K 3 11.944 25.073 60.395 1 70.51 ? C36 FRI 401 C 1 
HETATM 12 N N7 FRI . . . K 3 9.06 23.441 58.922 1 67.95 ? N7 FRI 401 C 1 
HETATM 13 C C24 FRI . . . K 3 8.146 23.956 59.741 1 63.68 ? C24 FRI 401 C 1 
HETATM 14 N N5 FRI . . . K 3 8.235 23.801 61.063 1 59.33 ? N5 FRI 401 C 1 
HETATM 15 N N4 FRI . . . K 3 7.127 24.64 59.229 1 64.41 ? N4 FRI 401 C 1 
HETATM 16 N N2 FRI . . . K 3 12.584 17.557 60.687 1 63.82 ? N2 FRI 401 C 1 
HETATM 17 C C31 FRI . . . K 3 12.037 16.557 59.763 1 64.55 ? C31 FRI 401 C 1 
HETATM 18 C C39 FRI . . . K 3 11.663 15.34 60.602 1 62.58 ? C39 FRI 401 C 1 
HETATM 19 C C19 FRI . . . K 3 12.923 14.788 61.262 1 64.7 ? C19 FRI 401 C 1 
HETATM 20 C C21 FRI . . . K 3 13.436 15.847 62.236 1 64.26 ? C21 FRI 401 C 1 
HETATM 21 C C43 FRI . . . K 3 13.747 17.153 61.493 1 64.08 ? C43 FRI 401 C 1 
HETATM 22 C C23 FRI . . . K 3 12.618 13.445 61.881 1 66.75 ? C23 FRI 401 C 1 
HETATM 23 N N8 FRI . . . K 3 12.529 12.261 61.238 1 69.55 ? N8 FRI 401 C 1 
HETATM 24 C C38 FRI . . . K 3 12.631 11.933 59.822 1 68.45 ? C38 FRI 401 C 1 
HETATM 25 N N6 FRI . . . K 3 12.309 11.277 62.149 1 71.24 ? N6 FRI 401 C 1 
HETATM 26 C C13 FRI . . . K 3 12.343 13.013 63.005 1 66.15 ? C13 FRI 401 C 1 
HETATM 27 C C14 FRI . . . K 3 12.175 11.845 63.367 1 69.51 ? C14 FRI 401 C 1 
HETATM 28 C C11 FRI . . . K 3 11.866 11.101 64.636 1 73.11 ? C11 FRI 401 C 1 
HETATM 29 C C15 FRI . . . K 3 12.248 9.76 64.633 1 79.01 ? C15 FRI 401 C 1 
HETATM 30 C C17 FRI . . . K 3 12.004 8.942 65.726 1 82.96 ? C17 FRI 401 C 1 
HETATM 31 C C20 FRI . . . K 3 11.356 9.474 66.832 1 80.54 ? C20 FRI 401 C 1 
HETATM 32 C C33 FRI . . . K 3 10.963 10.802 66.843 1 74.56 ? C33 FRI 401 C 1 
HETATM 33 C C34 FRI . . . K 3 11.203 11.626 65.748 1 71.24 ? C34 FRI 401 C 1 
HETATM 34 CL CL10 FRI . . . K 3 10.657 13.336 65.832 1 66.03 ? CL10 FRI 401 C 1 
HETATM 35 CL CL9 FRI . . . K 3 10.135 11.429 68.304 1 72.99 ? CL9 FRI 401 C 1 
HETATM 36 O O45 FRI . . . K 3 11.109 8.678 67.914 1 106.15 ? O45 FRI 401 C 1 
HETATM 37 C C40 FRI . . . K 3 12.213 8.092 68.59 1 112.64 ? C40 FRI 401 C 1 
HETATM 38 C C22 FRI . . . K 3 11.97 6.648 68.963 1 120.76 ? C22 FRI 401 C 1 
HETATM 39 C C28 FRI . . . K 3 12.554 5.647 68.188 1 126.58 ? C28 FRI 401 C 1 
HETATM 40 C C25 FRI . . . K 3 12.363 4.307 68.51 1 135.22 ? C25 FRI 401 C 1 
HETATM 41 C C35 FRI . . . K 3 11.584 3.962 69.619 1 138.3 ? C35 FRI 401 C 1 
HETATM 42 C C18 FRI . . . K 3 11.002 4.968 70.399 1 131.4 ? C18 FRI 401 C 1 
HETATM 43 C C16 FRI . . . K 3 11.193 6.313 70.074 1 123.11 ? C16 FRI 401 C 1 
HETATM 44 N N1 FRI . . . K 3 11.387 2.662 69.955 1 147.66 ? N1 FRI 401 C 1 
HETATM 45 C C12 FRI . . . K 3 11.539 1.661 69.085 1 151.68 ? C12 FRI 401 C 1 
HETATM 46 O O44 FRI . . . K 3 10.699 1.417 68.236 1 148.06 ? O44 FRI 401 C 1 
HETATM 47 C C42 FRI . . . K 3 12.798 0.851 69.216 1 161.42 ? C42 FRI 401 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           47 
#