data_1QVU # _model_server_result.job_id yVSJpUbetEZ1wkWGNKsYfg _model_server_result.datetime_utc '2024-10-15 08:21:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":196}' # _entry.id 1QVU # _exptl.entry_id 1QVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROFLAVIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QVU _cell.length_a 171.8 _cell.length_b 171.8 _cell.length_c 94.59 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F 1 1 B,D 2 1 A,C,E,F 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H11 N3' _chem_comp.formula_weight 209.247 _chem_comp.id PRL _chem_comp.mon_nstd_flag . _chem_comp.name PROFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PRL doub 305 n y C1 C13 PRL sing 306 n y C1 H1 PRL sing 307 n n C2 C3 PRL sing 308 n y C2 H2 PRL sing 309 n n C3 C4 PRL doub 310 n y C3 N15 PRL sing 311 n n C4 C11 PRL sing 312 n y C4 H4 PRL sing 313 n n C5 C6 PRL doub 314 n y C5 C14 PRL sing 315 n y C5 H5 PRL sing 316 n n C6 C7 PRL sing 317 n y C6 N16 PRL sing 318 n n C7 C8 PRL doub 319 n y C7 H7 PRL sing 320 n n C8 C12 PRL sing 321 n y C8 H8 PRL sing 322 n n C9 C12 PRL doub 323 n y C9 C13 PRL sing 324 n y C9 H9 PRL sing 325 n n N10 C11 PRL sing 326 n y N10 C14 PRL doub 327 n y C11 C13 PRL doub 328 n y C12 C14 PRL sing 329 n y N15 HNF1 PRL sing 330 n n N15 HNF2 PRL sing 331 n n N16 HNG1 PRL sing 332 n n N16 HNG2 PRL sing 333 n n # _atom_sites.entry_id 1QVU _atom_sites.fract_transf_matrix[1][1] 0.005821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ET A 1 195 5 ET ET . F 3 PRL A 1 196 11 PRL PF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PRL . . . F 3 -61.795 -45.216 2.798 1 138.97 ? C1 PRL 196 A 1 HETATM 2 C C2 PRL . . . F 3 -62.053 -45.395 1.444 1 139.74 ? C2 PRL 196 A 1 HETATM 3 C C3 PRL . . . F 3 -63.253 -45.948 1.022 1 139.71 ? C3 PRL 196 A 1 HETATM 4 C C4 PRL . . . F 3 -64.205 -46.328 1.929 1 140.47 ? C4 PRL 196 A 1 HETATM 5 C C5 PRL . . . F 3 -65.748 -46.804 6.391 1 142.48 ? C5 PRL 196 A 1 HETATM 6 C C6 PRL . . . F 3 -65.582 -46.652 7.75 1 141.92 ? C6 PRL 196 A 1 HETATM 7 C C7 PRL . . . F 3 -64.396 -46.098 8.238 1 142.01 ? C7 PRL 196 A 1 HETATM 8 C C8 PRL . . . F 3 -63.388 -45.688 7.368 1 142.23 ? C8 PRL 196 A 1 HETATM 9 C C9 PRL . . . F 3 -62.554 -45.436 5.093 1 142.86 ? C9 PRL 196 A 1 HETATM 10 N N10 PRL . . . F 3 -64.94 -46.555 4.169 1 144 ? N10 PRL 196 A 1 HETATM 11 C C11 PRL . . . F 3 -63.965 -46.157 3.275 1 142.69 ? C11 PRL 196 A 1 HETATM 12 C C12 PRL . . . F 3 -63.541 -45.841 6.011 1 144.2 ? C12 PRL 196 A 1 HETATM 13 C C13 PRL . . . F 3 -62.75 -45.597 3.731 1 141.71 ? C13 PRL 196 A 1 HETATM 14 C C14 PRL . . . F 3 -64.751 -46.391 5.529 1 144.55 ? C14 PRL 196 A 1 HETATM 15 N N15 PRL . . . F 3 -63.538 -46.136 -0.275 1 137.06 ? N15 PRL 196 A 1 HETATM 16 N N16 PRL . . . F 3 -66.578 -47.058 8.571 1 137.52 ? N16 PRL 196 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #