data_1QWC # _model_server_result.job_id VSCxP5YVTyDV5UgnBmPzGA _model_server_result.datetime_utc '2024-11-13 18:21:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 1QWC # _exptl.entry_id 1QWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.246 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-(AMINOMETHYL)BENZYL)ACETAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QWC _cell.length_a 44.784 _cell.length_b 108.779 _cell.length_c 164.325 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 82.1625 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 B ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc2 A SG CYS 30 A CYS 326 3_555 B ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 B ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 A SG CYS 35 A CYS 331 3_555 B ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C10 H15 N3' _chem_comp.formula_weight 177.246 _chem_comp.id 14W _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-(AMINOMETHYL)BENZYL)ACETAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 14W doub 1 n y C2 C1 14W sing 2 n y C2 H2 14W sing 3 n n C3 C4 14W sing 4 n y C3 C12 14W sing 5 n n C4 C5 14W doub 6 n y C4 H4 14W sing 7 n n C5 C6 14W sing 8 n y C5 H5 14W sing 9 n n C6 C1 14W doub 10 n y C6 H6 14W sing 11 n n C1 C7 14W sing 12 n n C7 N8 14W sing 13 n n C7 H71 14W sing 14 n n C7 H72 14W sing 15 n n N8 C9 14W sing 16 n n N8 H8 14W sing 17 n n C9 C10 14W sing 18 n n C9 N11 14W doub 19 n n C10 H101 14W sing 20 n n C10 H102 14W sing 21 n n C10 H103 14W sing 22 n n N11 H11 14W sing 23 n n C12 N13 14W sing 24 n n C12 H121 14W sing 25 n n C12 H122 14W sing 26 n n N13 H131 14W sing 27 n n N13 H132 14W sing 28 n n # _atom_sites.entry_id 1QWC _atom_sites.fract_transf_matrix[1][1] 0.022329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 950 950 ZN ZN2 . C 3 HEM A 1 900 900 HEM HEM . D 4 H4B A 1 901 901 H4B H4B . E 5 14W A 1 902 902 14W W14 . F 6 HOH A 1 1 1 HOH HOH . F 6 HOH A 2 2 2 HOH HOH . F 6 HOH A 3 3 3 HOH HOH . F 6 HOH A 4 4 4 HOH HOH . F 6 HOH A 5 5 5 HOH HOH . F 6 HOH A 6 6 6 HOH HOH . F 6 HOH A 7 7 7 HOH HOH . F 6 HOH A 8 8 8 HOH HOH . F 6 HOH A 9 9 9 HOH HOH . F 6 HOH A 10 10 10 HOH HOH . F 6 HOH A 11 11 11 HOH HOH . F 6 HOH A 12 12 12 HOH HOH . F 6 HOH A 13 13 13 HOH HOH . F 6 HOH A 14 14 14 HOH HOH . F 6 HOH A 15 15 15 HOH HOH . F 6 HOH A 16 16 16 HOH HOH . F 6 HOH A 17 17 17 HOH HOH . F 6 HOH A 18 18 18 HOH HOH . F 6 HOH A 19 19 19 HOH HOH . F 6 HOH A 20 20 20 HOH HOH . F 6 HOH A 21 21 21 HOH HOH . F 6 HOH A 22 22 22 HOH HOH . F 6 HOH A 23 23 23 HOH HOH . F 6 HOH A 24 24 24 HOH HOH . F 6 HOH A 25 25 25 HOH HOH . F 6 HOH A 26 26 26 HOH HOH . F 6 HOH A 27 27 27 HOH HOH . F 6 HOH A 28 28 28 HOH HOH . F 6 HOH A 29 29 29 HOH HOH . F 6 HOH A 30 30 30 HOH HOH . F 6 HOH A 31 31 31 HOH HOH . F 6 HOH A 32 32 32 HOH HOH . F 6 HOH A 33 33 33 HOH HOH . F 6 HOH A 34 34 34 HOH HOH . F 6 HOH A 35 35 35 HOH HOH . F 6 HOH A 36 36 36 HOH HOH . F 6 HOH A 37 37 37 HOH HOH . F 6 HOH A 38 38 38 HOH HOH . F 6 HOH A 39 39 39 HOH HOH . F 6 HOH A 40 40 40 HOH HOH . F 6 HOH A 41 41 41 HOH HOH . F 6 HOH A 42 42 42 HOH HOH . F 6 HOH A 43 43 43 HOH HOH . F 6 HOH A 44 44 44 HOH HOH . F 6 HOH A 45 45 45 HOH HOH . F 6 HOH A 46 46 46 HOH HOH . F 6 HOH A 47 47 47 HOH HOH . F 6 HOH A 48 48 48 HOH HOH . F 6 HOH A 49 49 49 HOH HOH . F 6 HOH A 50 50 50 HOH HOH . F 6 HOH A 51 51 51 HOH HOH . F 6 HOH A 52 52 52 HOH HOH . F 6 HOH A 53 53 53 HOH HOH . F 6 HOH A 54 54 54 HOH HOH . F 6 HOH A 55 55 55 HOH HOH . F 6 HOH A 56 56 56 HOH HOH . F 6 HOH A 57 57 57 HOH HOH . F 6 HOH A 58 58 58 HOH HOH . F 6 HOH A 59 59 59 HOH HOH . F 6 HOH A 60 60 60 HOH HOH . F 6 HOH A 61 61 61 HOH HOH . F 6 HOH A 62 62 62 HOH HOH . F 6 HOH A 63 63 63 HOH HOH . F 6 HOH A 64 64 64 HOH HOH . F 6 HOH A 65 65 65 HOH HOH . F 6 HOH A 66 66 66 HOH HOH . F 6 HOH A 67 67 67 HOH HOH . F 6 HOH A 68 68 68 HOH HOH . F 6 HOH A 69 69 69 HOH HOH . F 6 HOH A 70 70 70 HOH HOH . F 6 HOH A 71 71 71 HOH HOH . F 6 HOH A 72 72 72 HOH HOH . F 6 HOH A 73 73 73 HOH HOH . F 6 HOH A 74 74 74 HOH HOH . F 6 HOH A 75 75 75 HOH HOH . F 6 HOH A 76 76 76 HOH HOH . F 6 HOH A 77 77 77 HOH HOH . F 6 HOH A 78 78 78 HOH HOH . F 6 HOH A 79 79 79 HOH HOH . F 6 HOH A 80 80 80 HOH HOH . F 6 HOH A 81 81 81 HOH HOH . F 6 HOH A 82 82 82 HOH HOH . F 6 HOH A 83 83 83 HOH HOH . F 6 HOH A 84 84 84 HOH HOH . F 6 HOH A 85 85 85 HOH HOH . F 6 HOH A 86 86 86 HOH HOH . F 6 HOH A 87 87 87 HOH HOH . F 6 HOH A 88 88 88 HOH HOH . F 6 HOH A 89 89 89 HOH HOH . F 6 HOH A 90 90 90 HOH HOH . F 6 HOH A 91 91 91 HOH HOH . F 6 HOH A 92 92 92 HOH HOH . F 6 HOH A 93 93 93 HOH HOH . F 6 HOH A 94 94 94 HOH HOH . F 6 HOH A 95 95 95 HOH HOH . F 6 HOH A 96 96 96 HOH HOH . F 6 HOH A 97 97 97 HOH HOH . F 6 HOH A 98 98 98 HOH HOH . F 6 HOH A 99 99 99 HOH HOH . F 6 HOH A 100 100 100 HOH HOH . F 6 HOH A 101 101 101 HOH HOH . F 6 HOH A 102 102 102 HOH HOH . F 6 HOH A 103 103 103 HOH HOH . F 6 HOH A 104 104 104 HOH HOH . F 6 HOH A 105 105 105 HOH HOH . F 6 HOH A 106 106 106 HOH HOH . F 6 HOH A 107 107 107 HOH HOH . F 6 HOH A 108 108 108 HOH HOH . F 6 HOH A 109 109 109 HOH HOH . F 6 HOH A 110 110 110 HOH HOH . F 6 HOH A 111 111 111 HOH HOH . F 6 HOH A 112 112 112 HOH HOH . F 6 HOH A 113 113 113 HOH HOH . F 6 HOH A 114 114 114 HOH HOH . F 6 HOH A 115 115 115 HOH HOH . F 6 HOH A 116 116 116 HOH HOH . F 6 HOH A 117 117 117 HOH HOH . F 6 HOH A 118 118 118 HOH HOH . F 6 HOH A 119 119 119 HOH HOH . F 6 HOH A 120 120 120 HOH HOH . F 6 HOH A 121 121 121 HOH HOH . F 6 HOH A 122 122 122 HOH HOH . F 6 HOH A 123 123 123 HOH HOH . F 6 HOH A 124 124 124 HOH HOH . F 6 HOH A 125 125 125 HOH HOH . F 6 HOH A 126 126 126 HOH HOH . F 6 HOH A 127 127 127 HOH HOH . F 6 HOH A 128 128 128 HOH HOH . F 6 HOH A 129 129 129 HOH HOH . F 6 HOH A 130 130 130 HOH HOH . F 6 HOH A 131 131 131 HOH HOH . F 6 HOH A 132 132 132 HOH HOH . F 6 HOH A 133 133 133 HOH HOH . F 6 HOH A 134 134 134 HOH HOH . F 6 HOH A 135 135 135 HOH HOH . F 6 HOH A 136 136 136 HOH HOH . F 6 HOH A 137 137 137 HOH HOH . F 6 HOH A 138 138 138 HOH HOH . F 6 HOH A 139 139 139 HOH HOH . F 6 HOH A 140 140 140 HOH HOH . F 6 HOH A 141 141 141 HOH HOH . F 6 HOH A 142 142 142 HOH HOH . F 6 HOH A 143 143 143 HOH HOH . F 6 HOH A 144 144 144 HOH HOH . F 6 HOH A 145 145 145 HOH HOH . F 6 HOH A 146 146 146 HOH HOH . F 6 HOH A 147 147 147 HOH HOH . F 6 HOH A 148 148 148 HOH HOH . F 6 HOH A 149 149 149 HOH HOH . F 6 HOH A 150 150 150 HOH HOH . F 6 HOH A 151 151 151 HOH HOH . F 6 HOH A 152 152 152 HOH HOH . F 6 HOH A 153 153 153 HOH HOH . F 6 HOH A 154 154 154 HOH HOH . F 6 HOH A 155 155 155 HOH HOH . F 6 HOH A 156 156 156 HOH HOH . F 6 HOH A 157 157 157 HOH HOH . F 6 HOH A 158 158 158 HOH HOH . F 6 HOH A 159 159 159 HOH HOH . F 6 HOH A 160 160 160 HOH HOH . F 6 HOH A 161 161 161 HOH HOH . F 6 HOH A 162 162 162 HOH HOH . F 6 HOH A 163 163 163 HOH HOH . F 6 HOH A 164 164 164 HOH HOH . F 6 HOH A 165 165 165 HOH HOH . F 6 HOH A 166 166 166 HOH HOH . F 6 HOH A 167 167 167 HOH HOH . F 6 HOH A 168 168 168 HOH HOH . F 6 HOH A 169 169 169 HOH HOH . F 6 HOH A 170 170 170 HOH HOH . F 6 HOH A 171 171 171 HOH HOH . F 6 HOH A 172 172 172 HOH HOH . F 6 HOH A 173 173 173 HOH HOH . F 6 HOH A 174 174 174 HOH HOH . F 6 HOH A 175 175 175 HOH HOH . F 6 HOH A 176 176 176 HOH HOH . F 6 HOH A 177 177 177 HOH HOH . F 6 HOH A 178 178 178 HOH HOH . F 6 HOH A 179 179 179 HOH HOH . F 6 HOH A 180 180 180 HOH HOH . F 6 HOH A 181 181 181 HOH HOH . F 6 HOH A 182 182 182 HOH HOH . F 6 HOH A 183 183 183 HOH HOH . F 6 HOH A 184 184 184 HOH HOH . F 6 HOH A 185 185 185 HOH HOH . F 6 HOH A 186 186 186 HOH HOH . F 6 HOH A 187 187 187 HOH HOH . F 6 HOH A 188 188 188 HOH HOH . F 6 HOH A 189 189 189 HOH HOH . F 6 HOH A 190 190 190 HOH HOH . F 6 HOH A 191 191 191 HOH HOH . F 6 HOH A 192 192 192 HOH HOH . F 6 HOH A 193 193 193 HOH HOH . F 6 HOH A 194 194 194 HOH HOH . F 6 HOH A 195 195 195 HOH HOH . F 6 HOH A 196 196 196 HOH HOH . F 6 HOH A 197 197 197 HOH HOH . F 6 HOH A 198 198 198 HOH HOH . F 6 HOH A 199 199 199 HOH HOH . F 6 HOH A 200 200 200 HOH HOH . F 6 HOH A 201 201 201 HOH HOH . F 6 HOH A 202 202 202 HOH HOH . F 6 HOH A 203 203 203 HOH HOH . F 6 HOH A 204 204 204 HOH HOH . F 6 HOH A 205 205 205 HOH HOH . F 6 HOH A 206 206 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 14W . . . E 5 3.04 2.478 58.106 1 23.67 ? C2 14W 902 A 1 HETATM 2 C C3 14W . . . E 5 4.417 2.261 58.213 1 31.52 ? C3 14W 902 A 1 HETATM 3 C C4 14W . . . E 5 4.86 1.162 58.956 1 37.24 ? C4 14W 902 A 1 HETATM 4 C C5 14W . . . E 5 3.946 0.305 59.571 1 36.07 ? C5 14W 902 A 1 HETATM 5 C C6 14W . . . E 5 2.575 0.538 59.446 1 33.84 ? C6 14W 902 A 1 HETATM 6 C C1 14W . . . E 5 2.106 1.632 58.712 1 27.48 ? C1 14W 902 A 1 HETATM 7 C C7 14W . . . E 5 0.631 1.927 58.591 1 18.05 ? C7 14W 902 A 1 HETATM 8 N N8 14W . . . E 5 -0.069 0.674 58.425 1 27.08 ? N8 14W 902 A 1 HETATM 9 C C9 14W . . . E 5 -1.296 0.397 58.901 1 34.58 ? C9 14W 902 A 1 HETATM 10 C C10 14W . . . E 5 -1.771 1.095 60.136 1 17.92 ? C10 14W 902 A 1 HETATM 11 N N11 14W . . . E 5 -2.063 -0.446 58.312 1 36.14 ? N11 14W 902 A 1 HETATM 12 C C12 14W . . . E 5 5.385 3.198 57.535 1 34.39 ? C12 14W 902 A 1 HETATM 13 N N13 14W . . . E 5 4.696 4.032 56.582 1 35.95 ? N13 14W 902 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #