data_1QWJ # _model_server_result.job_id JeuIrmL4iIoFEt61YzDWXg _model_server_result.datetime_utc '2024-12-25 14:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1qwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":4002}' # _entry.id 1QWJ # _exptl.entry_id 1QWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 614.451 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE-5-N-ACETYLNEURAMINIC ACID" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1QWJ _cell.length_a 74.048 _cell.length_b 79.941 _cell.length_c 170.251 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I 1 1 C,D,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C20 H31 N4 O16 P' _chem_comp.formula_weight 614.451 _chem_comp.id NCC _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE-5-N-ACETYLNEURAMINIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P NCC sing 237 n n O3P H3P NCC sing 238 n n P O2P NCC sing 239 n n P O1P NCC doub 240 n n P O5' NCC sing 241 n n O2P C10 NCC sing 242 n n O5' C5' NCC sing 243 n n C5' C4' NCC sing 244 n n C5' "H5'1" NCC sing 245 n n C5' "H5'2" NCC sing 246 n n C4' O4' NCC sing 247 n n C4' C3' NCC sing 248 n n C4' H4' NCC sing 249 n n O4' C1' NCC sing 250 n n C1' N1 NCC sing 251 n n C1' C2' NCC sing 252 n n C1' H1' NCC sing 253 n n N1 C6 NCC sing 254 n y N1 C2 NCC sing 255 n y C6 C5 NCC doub 256 n y C6 H6 NCC sing 257 n n C5 C4 NCC sing 258 n y C5 H5 NCC sing 259 n n C4 N4 NCC sing 260 n n C4 N3 NCC doub 261 n y N4 HN41 NCC sing 262 n n N4 HN42 NCC sing 263 n n N3 C2 NCC sing 264 n y C2 O2 NCC doub 265 n n C2' O2' NCC sing 266 n n C2' C3' NCC sing 267 n n C2' H2' NCC sing 268 n n O2' H1 NCC sing 269 n n C3' O3' NCC sing 270 n n C3' H3' NCC sing 271 n n O3' H2 NCC sing 272 n n C9 O1B NCC sing 273 n n C9 O1A NCC doub 274 n n C9 C10 NCC sing 275 n n O1B H1B NCC sing 276 n n C10 O6 NCC sing 277 n n C10 C20 NCC sing 278 n n O6 C12 NCC sing 279 n n C12 C13 NCC sing 280 n n C12 C16 NCC sing 281 n n C12 H12 NCC sing 282 n n C13 O7 NCC sing 283 n n C13 C14 NCC sing 284 n n C13 H13 NCC sing 285 n n O7 HO7 NCC sing 286 n n C14 O8 NCC sing 287 n n C14 C15 NCC sing 288 n n C14 H14 NCC sing 289 n n O8 HO8 NCC sing 290 n n C15 O9 NCC sing 291 n n C15 H151 NCC sing 292 n n C15 H152 NCC sing 293 n n O9 HO9 NCC sing 294 n n C16 N5 NCC sing 295 n n C16 C19 NCC sing 296 n n C16 H16 NCC sing 297 n n N5 C17 NCC sing 298 n n N5 HN5 NCC sing 299 n n C17 O10 NCC doub 300 n n C17 C18 NCC sing 301 n n C18 H181 NCC sing 302 n n C18 H182 NCC sing 303 n n C18 H183 NCC sing 304 n n C19 O4 NCC sing 305 n n C19 C20 NCC sing 306 n n C19 H19 NCC sing 307 n n O4 HO4 NCC sing 308 n n C20 H201 NCC sing 309 n n C20 H202 NCC sing 310 n n # _atom_sites.entry_id 1QWJ _atom_sites.fract_transf_matrix[1][1] 0.013505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NCC A 1 2002 2002 NCC NCC . F 2 NCC C 1 3002 3002 NCC NCC . G 2 NCC D 1 4002 4002 NCC NCC . H 3 HOH A 1 2003 2 HOH HOH . H 3 HOH A 2 2004 3 HOH HOH . H 3 HOH A 3 2005 5 HOH HOH . H 3 HOH A 4 2006 6 HOH HOH . H 3 HOH A 5 2007 11 HOH HOH . H 3 HOH A 6 2008 13 HOH HOH . H 3 HOH A 7 2009 14 HOH HOH . H 3 HOH A 8 2010 20 HOH HOH . H 3 HOH A 9 2011 23 HOH HOH . H 3 HOH A 10 2012 24 HOH HOH . H 3 HOH A 11 2013 26 HOH HOH . H 3 HOH A 12 2014 27 HOH HOH . H 3 HOH A 13 2015 28 HOH HOH . H 3 HOH A 14 2016 29 HOH HOH . H 3 HOH A 15 2017 31 HOH HOH . H 3 HOH A 16 2018 33 HOH HOH . H 3 HOH A 17 2019 34 HOH HOH . H 3 HOH A 18 2020 37 HOH HOH . H 3 HOH A 19 2021 38 HOH HOH . H 3 HOH A 20 2022 41 HOH HOH . H 3 HOH A 21 2023 44 HOH HOH . H 3 HOH A 22 2024 45 HOH HOH . H 3 HOH A 23 2025 47 HOH HOH . H 3 HOH A 24 2026 50 HOH HOH . H 3 HOH A 25 2027 56 HOH HOH . H 3 HOH A 26 2028 57 HOH HOH . H 3 HOH A 27 2029 62 HOH HOH . H 3 HOH A 28 2030 68 HOH HOH . H 3 HOH A 29 2031 69 HOH HOH . H 3 HOH A 30 2032 70 HOH HOH . H 3 HOH A 31 2033 71 HOH HOH . H 3 HOH A 32 2034 72 HOH HOH . H 3 HOH A 33 2035 73 HOH HOH . H 3 HOH A 34 2036 74 HOH HOH . H 3 HOH A 35 2037 75 HOH HOH . H 3 HOH A 36 2038 76 HOH HOH . H 3 HOH A 37 2039 78 HOH HOH . H 3 HOH A 38 2040 79 HOH HOH . H 3 HOH A 39 2041 81 HOH HOH . H 3 HOH A 40 2042 82 HOH HOH . H 3 HOH A 41 2043 85 HOH HOH . H 3 HOH A 42 2044 86 HOH HOH . H 3 HOH A 43 2045 87 HOH HOH . H 3 HOH A 44 2046 88 HOH HOH . H 3 HOH A 45 2047 95 HOH HOH . H 3 HOH A 46 2048 96 HOH HOH . H 3 HOH A 47 2049 98 HOH HOH . H 3 HOH A 48 2050 105 HOH HOH . H 3 HOH A 49 2051 108 HOH HOH . H 3 HOH A 50 2052 110 HOH HOH . H 3 HOH A 51 2053 112 HOH HOH . H 3 HOH A 52 2054 154 HOH HOH . I 3 HOH B 1 269 1 HOH HOH . I 3 HOH B 2 270 4 HOH HOH . I 3 HOH B 3 271 8 HOH HOH . I 3 HOH B 4 272 9 HOH HOH . I 3 HOH B 5 273 10 HOH HOH . I 3 HOH B 6 274 12 HOH HOH . I 3 HOH B 7 275 16 HOH HOH . I 3 HOH B 8 276 17 HOH HOH . I 3 HOH B 9 277 18 HOH HOH . I 3 HOH B 10 278 21 HOH HOH . I 3 HOH B 11 279 22 HOH HOH . I 3 HOH B 12 280 25 HOH HOH . I 3 HOH B 13 281 30 HOH HOH . I 3 HOH B 14 282 32 HOH HOH . I 3 HOH B 15 283 35 HOH HOH . I 3 HOH B 16 284 36 HOH HOH . I 3 HOH B 17 285 39 HOH HOH . I 3 HOH B 18 286 40 HOH HOH . I 3 HOH B 19 287 42 HOH HOH . I 3 HOH B 20 288 43 HOH HOH . I 3 HOH B 21 289 46 HOH HOH . I 3 HOH B 22 290 48 HOH HOH . I 3 HOH B 23 291 49 HOH HOH . I 3 HOH B 24 292 51 HOH HOH . I 3 HOH B 25 293 52 HOH HOH . I 3 HOH B 26 294 53 HOH HOH . I 3 HOH B 27 295 54 HOH HOH . I 3 HOH B 28 296 55 HOH HOH . I 3 HOH B 29 297 58 HOH HOH . I 3 HOH B 30 298 59 HOH HOH . I 3 HOH B 31 299 60 HOH HOH . I 3 HOH B 32 300 61 HOH HOH . I 3 HOH B 33 301 63 HOH HOH . I 3 HOH B 34 302 64 HOH HOH . I 3 HOH B 35 303 65 HOH HOH . I 3 HOH B 36 304 66 HOH HOH . I 3 HOH B 37 305 67 HOH HOH . I 3 HOH B 38 306 77 HOH HOH . I 3 HOH B 39 307 80 HOH HOH . I 3 HOH B 40 308 83 HOH HOH . I 3 HOH B 41 309 84 HOH HOH . I 3 HOH B 42 310 89 HOH HOH . I 3 HOH B 43 311 90 HOH HOH . I 3 HOH B 44 312 91 HOH HOH . I 3 HOH B 45 313 92 HOH HOH . I 3 HOH B 46 314 93 HOH HOH . I 3 HOH B 47 315 94 HOH HOH . I 3 HOH B 48 316 99 HOH HOH . I 3 HOH B 49 317 100 HOH HOH . I 3 HOH B 50 318 101 HOH HOH . I 3 HOH B 51 319 102 HOH HOH . I 3 HOH B 52 320 103 HOH HOH . I 3 HOH B 53 321 104 HOH HOH . I 3 HOH B 54 322 106 HOH HOH . I 3 HOH B 55 323 107 HOH HOH . I 3 HOH B 56 324 109 HOH HOH . I 3 HOH B 57 325 111 HOH HOH . I 3 HOH B 58 326 113 HOH HOH . I 3 HOH B 59 327 114 HOH HOH . J 3 HOH C 1 3003 7 HOH HOH . J 3 HOH C 2 3004 15 HOH HOH . J 3 HOH C 3 3005 19 HOH HOH . J 3 HOH C 4 3006 97 HOH HOH . J 3 HOH C 5 3007 115 HOH HOH . J 3 HOH C 6 3008 116 HOH HOH . J 3 HOH C 7 3009 117 HOH HOH . J 3 HOH C 8 3010 119 HOH HOH . J 3 HOH C 9 3011 120 HOH HOH . J 3 HOH C 10 3012 121 HOH HOH . J 3 HOH C 11 3013 122 HOH HOH . J 3 HOH C 12 3014 123 HOH HOH . J 3 HOH C 13 3015 124 HOH HOH . J 3 HOH C 14 3016 126 HOH HOH . J 3 HOH C 15 3017 128 HOH HOH . J 3 HOH C 16 3018 130 HOH HOH . J 3 HOH C 17 3019 133 HOH HOH . J 3 HOH C 18 3020 134 HOH HOH . J 3 HOH C 19 3021 137 HOH HOH . J 3 HOH C 20 3022 139 HOH HOH . J 3 HOH C 21 3023 142 HOH HOH . J 3 HOH C 22 3024 147 HOH HOH . J 3 HOH C 23 3025 148 HOH HOH . J 3 HOH C 24 3026 149 HOH HOH . J 3 HOH C 25 3027 151 HOH HOH . J 3 HOH C 26 3028 153 HOH HOH . K 3 HOH D 1 4003 118 HOH HOH . K 3 HOH D 2 4004 125 HOH HOH . K 3 HOH D 3 4005 127 HOH HOH . K 3 HOH D 4 4006 129 HOH HOH . K 3 HOH D 5 4007 131 HOH HOH . K 3 HOH D 6 4008 132 HOH HOH . K 3 HOH D 7 4009 135 HOH HOH . K 3 HOH D 8 4010 136 HOH HOH . K 3 HOH D 9 4011 138 HOH HOH . K 3 HOH D 10 4012 140 HOH HOH . K 3 HOH D 11 4013 141 HOH HOH . K 3 HOH D 12 4014 143 HOH HOH . K 3 HOH D 13 4015 144 HOH HOH . K 3 HOH D 14 4016 145 HOH HOH . K 3 HOH D 15 4017 146 HOH HOH . K 3 HOH D 16 4018 150 HOH HOH . K 3 HOH D 17 4019 152 HOH HOH . K 3 HOH D 18 4020 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P NCC . . . G 2 89.911 19.168 46.596 0.7 73.47 ? O3P NCC 4002 D 1 HETATM 2 P P NCC . . . G 2 89.307 20.054 47.63 0.7 73.4 ? P NCC 4002 D 1 HETATM 3 O O2P NCC . . . G 2 89.097 19.21 49 0.7 71.32 ? O2P NCC 4002 D 1 HETATM 4 O O1P NCC . . . G 2 90.225 21.217 47.841 0.7 73.39 ? O1P NCC 4002 D 1 HETATM 5 O O5' NCC . . . G 2 87.883 20.613 47.151 0.7 75.86 ? O5' NCC 4002 D 1 HETATM 6 C C5' NCC . . . G 2 86.744 19.791 46.839 0.7 80.16 ? C5' NCC 4002 D 1 HETATM 7 C C4' NCC . . . G 2 85.7 20.576 46.011 0.7 82.21 ? C4' NCC 4002 D 1 HETATM 8 O O4' NCC . . . G 2 85.463 21.847 46.645 0.7 83.16 ? O4' NCC 4002 D 1 HETATM 9 C C1' NCC . . . G 2 85.366 22.892 45.661 0.7 87.65 ? C1' NCC 4002 D 1 HETATM 10 N N1 NCC . . . G 2 86.017 24.154 46.134 0.7 90.16 ? N1 NCC 4002 D 1 HETATM 11 C C6 NCC . . . G 2 87.345 24.13 46.522 0.7 91.08 ? C6 NCC 4002 D 1 HETATM 12 C C5 NCC . . . G 2 88 25.304 46.976 0.7 91.82 ? C5 NCC 4002 D 1 HETATM 13 C C4 NCC . . . G 2 87.233 26.49 47.037 0.7 92.97 ? C4 NCC 4002 D 1 HETATM 14 N N4 NCC . . . G 2 87.803 27.64 47.462 0.7 92.62 ? N4 NCC 4002 D 1 HETATM 15 N N3 NCC . . . G 2 85.914 26.481 46.648 0.7 92.61 ? N3 NCC 4002 D 1 HETATM 16 C C2 NCC . . . G 2 85.298 25.335 46.217 0.7 91.79 ? C2 NCC 4002 D 1 HETATM 17 O O2 NCC . . . G 2 84.113 25.393 45.883 0.7 93.51 ? O2 NCC 4002 D 1 HETATM 18 C C2' NCC . . . G 2 86 22.355 44.354 0.7 85.98 ? C2' NCC 4002 D 1 HETATM 19 O O2' NCC . . . G 2 85.181 22.657 43.217 0.7 88.49 ? O2' NCC 4002 D 1 HETATM 20 C C3' NCC . . . G 2 86.211 20.844 44.581 0.7 83.85 ? C3' NCC 4002 D 1 HETATM 21 O O3' NCC . . . G 2 85.436 20.054 43.664 0.7 79.24 ? O3' NCC 4002 D 1 HETATM 22 C C9 NCC . . . G 2 90.855 19.828 50.575 0.7 66.17 ? C9 NCC 4002 D 1 HETATM 23 O O1B NCC . . . G 2 91.668 19.646 49.69 0.7 67.34 ? O1B NCC 4002 D 1 HETATM 24 O O1A NCC . . . G 2 91.247 20.213 51.788 0.7 64.56 ? O1A NCC 4002 D 1 HETATM 25 C C10 NCC . . . G 2 89.36 19.634 50.38 0.7 67.51 ? C10 NCC 4002 D 1 HETATM 26 O O6 NCC . . . G 2 88.893 18.589 51.295 0.7 67.64 ? O6 NCC 4002 D 1 HETATM 27 C C12 NCC . . . G 2 87.45 18.339 51.201 0.7 68.79 ? C12 NCC 4002 D 1 HETATM 28 C C13 NCC . . . G 2 87.017 17.208 52.18 0.7 67.57 ? C13 NCC 4002 D 1 HETATM 29 O O7 NCC . . . G 2 87.728 17.342 53.415 0.7 69.89 ? O7 NCC 4002 D 1 HETATM 30 C C14 NCC . . . G 2 87.269 15.798 51.57 0.7 69.36 ? C14 NCC 4002 D 1 HETATM 31 O O8 NCC . . . G 2 86.566 15.639 50.329 0.7 67.35 ? O8 NCC 4002 D 1 HETATM 32 C C15 NCC . . . G 2 86.82 14.695 52.557 0.7 68.94 ? C15 NCC 4002 D 1 HETATM 33 O O9 NCC . . . G 2 87.717 13.583 52.494 0.7 70.64 ? O9 NCC 4002 D 1 HETATM 34 C C16 NCC . . . G 2 86.645 19.649 51.515 0.7 69.78 ? C16 NCC 4002 D 1 HETATM 35 N N5 NCC . . . G 2 85.212 19.412 51.419 0.7 71.42 ? N5 NCC 4002 D 1 HETATM 36 C C17 NCC . . . G 2 84.477 19.851 52.614 0.7 74.15 ? C17 NCC 4002 D 1 HETATM 37 O O10 NCC . . . G 2 85.011 20.37 53.591 0.7 74.96 ? O10 NCC 4002 D 1 HETATM 38 C C18 NCC . . . G 2 82.991 19.638 52.624 0.7 74.54 ? C18 NCC 4002 D 1 HETATM 39 C C19 NCC . . . G 2 87.087 20.771 50.534 0.7 67.22 ? C19 NCC 4002 D 1 HETATM 40 O O4 NCC . . . G 2 86.373 21.979 50.81 0.7 66.01 ? O4 NCC 4002 D 1 HETATM 41 C C20 NCC . . . G 2 88.619 20.98 50.693 0.7 66.64 ? C20 NCC 4002 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #